Commit Graph

1216 Commits

Author SHA1 Message Date
Allen Byrne
eb0d1e4e8e HDFFV-10581 add missed change and release note. 2019-07-09 16:30:27 -05:00
Allen Byrne
e7f16c6f2c HDFFV-10805 Add option to only build shared targets
HDFFV-10805 Add ONLY_SHARED_LIBS option and prefer shared over static
HDFFV-10803 Update FindSZIP.cmake find module
Remove unneeded modules and update java modules
2019-06-18 07:46:25 -05:00
Larry Knox
54a07f556c Add options to enable or disable building tools and tests. The default
is enabled for each.
2019-06-05 23:20:01 -05:00
hdftest
1cec61a775 Snapshot version 1.11 release 5.
Update version to 1.11.6.
2019-05-02 10:42:53 -05:00
Binh-Minh Ribler
3bc708078c Added more info to the function headers. 2019-04-22 18:50:33 -05:00
Binh-Minh Ribler
c3d7708e53 Added new C++ wrappers - HDFFV-10622
Description:
    Added wrappers for H5Pset/get_create_intermediate_group:
        // Specifies in property list whether to create missing
        // intermediate groups
        void setCreateIntermediateGroup(bool crt_intmd_group) const;

        // Determines whether property is set to enable creating missing
        // intermediate groups
        bool getCreateIntermediateGroup() const;
Platforms tested:
    Linux/64 (jelly)
    Linux/64 (platypus)
    Darwin (osx1011test)
2019-04-21 23:18:36 -05:00
Quincey Koziol
d7e1464058 Add C++, Java, and FORTRAN wrappers and tests for H5Fget_fileno 2019-04-13 22:58:16 -05:00
Quincey Koziol
fc945999d0 Merge remote-tracking branch 'origin/develop' into env_vol_load 2019-04-03 17:27:10 -05:00
hdftest
7a0ac416c9 Snapshot version 1.11 release 4.
Update version to 1.11.5.
2019-04-01 16:11:28 -05:00
Binh-Minh Ribler
222346f373 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_bmr_fixbug into develop 2019-03-20 14:07:40 -05:00
Binh-Minh Ribler
7add52ff4f Fixed HDFFV-10210 and HDFFV-10587
Description:
    - Added parameter validation (HDFFV-10210)
    - Added detection of division by zero (HDFFV-10587 - CVE-2018-17438)
    - Fixed typos in various tests
Platforms tested:
    Linux/64 (jelly)
    Linux/64 (platypus)
    Darwin (osx1011test)
2019-03-20 14:03:48 -05:00
Quincey Koziol
deeb302747 Specify the default VOL connector to use with an environment variable.
This implicitly adds support for changing the VOL connector for command-line
tools or any application linked with the library.

Also, add 'make check-vol' support for all directories, clearing up necessary
issues in testing scripts, etc.
2019-03-09 21:41:38 -06:00
Allen Byrne
67bc117efe Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '5ad3891d9b861593ebe25d540bed2d913eb83aba':
  Remove ' ' (typo).
  Code improvement
  Removed an extra "using" statement
  Adding documentation
  More changes to align with incoming selection improvements.
  Added C++ wrapper for H5Ovisit2
  Adding a C++ wrapper
2019-02-17 09:42:00 -06:00
Binh-Minh Ribler
6c212353c4 Code improvement
Description:
    Removed dead code and accidentally leftover code
Platforms tested:
    Linux/64 (jelly) - very minor
2019-02-16 00:47:47 -06:00
Allen Byrne
122b63a5a2 HDFFV-10703 Update CMake commands to latest standard 2019-02-15 15:48:24 -06:00
Binh-Minh Ribler
f2f890fd82 Removed an extra "using" statement 2019-02-14 19:40:10 -06:00
Binh-Minh Ribler
dcf93b3ec5 Adding documentation
Description
    Added detail about the argument "fields" of H5Object::visit.
2019-02-14 19:27:02 -06:00
Binh-Minh Ribler
4a4ec03dfd Adding a C++ wrapper
Description:
    - Added a wrapper for H5Ovisit2 to class H5Object
        // Recursively visit elements reachable from this object.
        void visit(H5_index_t idx_type, H5_iter_order_t order,
                   visit_operator_t user_op, void *op_data, unsigned int fields);
    - Fixed various typos in documentation
Platforms tested:
    Linux/64 (jelly)
    Linux/64 (platypus)
    Darwin (osx1011test)
2019-02-14 15:35:04 -06:00
Allen Byrne
36e3d1600a Refactor out timeout values 2019-02-06 16:41:58 -06:00
Binh-Minh Ribler
9c6744778e Fixed documentation - typo only 2018-12-23 00:51:17 -06:00
Allen Byrne
991996b251 Remove unused CMake files 2018-12-21 12:22:32 -06:00
Allen Byrne
7e8923957f HDFFV-10656 Add CHECK_VOL support to CMake 2018-12-20 15:11:27 -06:00
Dana Robinson
e21c1cf7c6 Removed H5I_REFERENCE from the library. It has always been unused
and has been marked 'deprecated' since 1.10.0. Fixes HDFFV-10252.
2018-12-08 08:14:05 -08:00
Quincey Koziol
d442fe2d98 Add support for "make check-vol", along with a few minor cleanups, etc. 2018-11-28 19:07:30 -06:00
hdftest
db48399bd8 Snapshot version 1.11 release 3. 2018-11-05 12:21:13 -06:00
Dana Robinson
e962df1591 VOL FEATURE 2018-10-10 08:10:15 -07:00
hdftest
e2f6e6f62f Snapshot version 1.11 release 2. 2018-09-20 14:54:10 -05:00
Dana Robinson
eb78fd8832 Develop normalization with vol_integration.
Mostly peripheral things like the tools and wrappers,
with just enough core library code to support that.
2018-09-18 22:57:37 -07:00
Larry Knox
d20fd310e4 Change prefix in example scripts to relative path to bin. This was done
for 1.8, and works wherever installed without the need to replace the
original prefix.
2018-08-23 07:37:00 -05:00
Binh-Minh Ribler
7d9f5ed49a Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_bmr_cpp4 into develop 2018-07-28 08:05:16 -05:00
Binh-Minh Ribler
4578eb0fc1 Fixed document format
Platforms tested:
    Linux/64 (jelly) (only in comment sections)
2018-07-28 08:00:32 -05:00
Binh-Minh Ribler
f5551a9602 Fixed missing backslash 2018-07-24 08:39:16 -05:00
Larry Knox
9838a1a08f Add missing '\' in the middle of the public headers list in Makefile.am. 2018-07-24 08:36:37 -05:00
Binh-Minh Ribler
3c6a39858f Fixed typos 2018-07-23 11:18:43 -05:00
Binh-Minh Ribler
09913e2f8e Added class DSetAccPropList
Description:
    - Added class DSetAccPropList for the dataset access property list.
    - Added wrapper for H5Dget_access_plist to class DataSet
        // Gets the access property list of this dataset.
        DSetAccPropList getAccessPlist() const;

    - Added wrappers for H5Pset_chunk_cache and H5Pget_chunk_cache to class
      DSetAccPropList
        // Sets the raw data chunk cache parameters.
        void setChunkCache(size_t rdcc_nslots, size_t rdcc_nbytes, double rdcc_w0)

        // Retrieves the raw data chunk cache parameters.
        void getChunkCache(size_t &rdcc_nslots, size_t &rdcc_nbytes, double &rdcc_w0)

    - Added two more arguments to H5Location::createDataSet:
        const DSetAccPropList& dapl = DSetAccPropList::DEFAULT
        const LinkCreatPropList& lcpl = LinkCreatPropList::DEFAULT

    - Added one more argument to H5Location::openDataSet:
        const DSetAccPropList& dapl = DSetAccPropList::DEFAULT

Platforms tested:
    Linux/64 (jelly)
    Linux/32 (jam)
    Darwin (osx1010test)
2018-07-22 15:22:34 -05:00
Binh-Minh Ribler
4f37cdcd36 Code improvement
Description:
    Moved the new H5Object::getInfo member functions to H5Location and
    made them overloaded with the existing H5Location::getObjinfo.  This
    way is cleaner than the previous approach.
Platforms tested:
    Linux/64 (jelly)
    Linux/32 (jam)
    Darwin (osx1010test)
2018-07-21 00:40:57 -05:00
Binh-Minh Ribler
dd0a040ec8 Fixed EED-319
Description:
    - Fixed doc issue
      Added an html version for the C++ function mapping table and removed
      the single web page version.
      Updated cpp_doc_config to use the html file.
    - Added a couple more minor tests
2018-07-18 10:36:05 -05:00
Binh-Minh Ribler
a31cd3623f Fixed HDFFV-10472
Description:
    Added operator!= to DataType
        bool operator!=(const DataType& compared_type)
Platforms tested:
    Linux/64 (jelly)
    Linux/32 (jam)
    Darwin (osx1010test)
2018-07-17 12:21:07 -05:00
Binh-Minh Ribler
3aa2443518 Fixed HDFFV-10458 partially
Description:
    Added wrappers for H5Oget_info_by_idx2.

    // Returns information about an HDF5 object, given its index.
    void getInfo(const char* grp_name, H5_index_t idx_type,
                 H5_iter_order_t order, hsize_t idx, H5O_info_t& objinfo,
                 unsigned fields = H5O_INFO_BASIC,
                 const LinkAccPropList& lapl = LinkAccPropList::DEFAULT)
    void getInfo(const H5std_string& grp_name, H5_index_t idx_type,
                 H5_iter_order_t order, hsize_t idx, H5O_info_t& objinfo,
                 unsigned fields = H5O_INFO_BASIC,
                 const LinkAccPropList& lapl = LinkAccPropList::DEFAULT)
Platforms tested:
    Linux/64 (jelly)
    Linux/32 (jam)
    Darwin (osx1010test)
2018-07-17 09:12:10 -05:00
Binh-Minh Ribler
944735221e Fixed comments 2018-07-17 01:32:07 -05:00
Binh-Minh Ribler
14bf28780a Fixed HDFFV-10458 partially
Description:
    Added wrappers for H5Oget_info2 and H5Oget_info_by_name2.

    // Returns information about an HDF5 object.
    void getInfo(H5O_info_t& objinfo, unsigned fields = H5O_INFO_BASIC)

    // Returns information about an HDF5 object, given its name.
    void getInfo(const char* name, H5O_info_t& objinfo,
                 unsigned fields = H5O_INFO_BASIC,
                 const LinkAccPropList& lapl = LinkAccPropList::DEFAULT)
    void getInfo(const H5std_string& name, H5O_info_t& objinfo,
                 unsigned fields = H5O_INFO_BASIC,
                 const LinkAccPropList& lapl = LinkAccPropList::DEFAULT)
Platforms tested:
    Linux/64 (jelly)
    Linux/32 (jam)
    Darwin (osx1010test)
2018-07-17 01:09:45 -05:00
Binh-Minh Ribler
ec31438afd Fixed HDFFV-10404
Description:
    Applied the typo fixes from user's report.
    The previous pull request couldn't be merged because it was too old,
    and it was too complicated for me to resolve conflicts.
Platform tested:
    Linux/64 (jelly) - very minor
2018-07-13 13:40:22 -05:00
hdftest
b193bc11c9 Revert "Merge pull request #1116 in HDFFV/hdf5 from ~HDFTEST/hdf5_hft:hdf5_1_10 to develop"
This reverts commit e9f476dad4, reversing
changes made to 2ff00b1b93.
2018-06-24 18:04:23 -05:00
hdftest
25f80cbbec Snapshot version 1.10 release 3 (snap3) 2018-06-24 17:35:05 -05:00
hdftest
67d6f8d405 Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)
* commit '87829e06189cd9b29583b5ca8065b52b1f4cd523': (30 commits)
  HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
  HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
  HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
  Cleaned up H5Fmount/unmount code.
  Normalization with vol_integration branch.
  Add fortran MPI to test and example
  Add mpi include folders for fortran C objects
  Normalization with the vol_integration branch.
  Fixed MANIFEST
  Fix usage of compression lib in shared tests
  Fix jni function call version
  Fix the error found after earlier checkin.
  H5O_info fixes for java and examples
  Added a RELASE.txt entry for HDFFV-10505.
  Changed 'deprecated' to indicate 'no longer supported' in the --enable-debug/production configure flags.
  (1) Made the change according to the pull request feedback. (2) Removed the performance test form test/th5o.c: will decide on what needs to be done to show speedup via HDFFV-10463.
  Normalize with vol_integration.
  Removed unused H5MF functions and updated FUNC_ENTER macros and naming in H5MFsection.c.
  Restored some unused #defines to the deprecated section of H5Dpublic.h.
  Changes made based on feedback from pull request #1039.
  ...
2018-06-16 17:47:39 -05:00
Scot Breitenfeld
87829e0618 Merge pull request #1111 in HDFFV/hdf5 from hdf5_1_10.sync to hdf5_1_10
* commit '57f64b92d19fed2879ee9bafe1d29bfac865d54c': (30 commits)
  HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
  HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
  HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
  Cleaned up H5Fmount/unmount code.
  Normalization with vol_integration branch.
  Add fortran MPI to test and example
  Add mpi include folders for fortran C objects
  Normalization with the vol_integration branch.
  Fixed MANIFEST
  Fix usage of compression lib in shared tests
  Fix jni function call version
  Fix the error found after earlier checkin.
  H5O_info fixes for java and examples
  Added a RELASE.txt entry for HDFFV-10505.
  Changed 'deprecated' to indicate 'no longer supported' in the --enable-debug/production configure flags.
  (1) Made the change according to the pull request feedback. (2) Removed the performance test form test/th5o.c: will decide on what needs to be done to show speedup via HDFFV-10463.
  Normalize with vol_integration.
  Removed unused H5MF functions and updated FUNC_ENTER macros and naming in H5MFsection.c.
  Restored some unused #defines to the deprecated section of H5Dpublic.h.
  Changes made based on feedback from pull request #1039.
  ...
2018-06-15 13:53:36 -05:00
M. Scot Breitenfeld
f484649347 Merge branch 'develop' into hdf5_1_10.sync 2018-06-04 14:41:12 -05:00
hdftest
afe28b7607 Snapshot version 1.10 release 3 (snap2) 2018-06-03 21:53:30 -05:00
hdftest
f8690c40b9 Updated version to 1.10.3-snap2 2018-05-29 15:16:31 -05:00
Vailin Choi
be2fc7dcd1 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '2b0fb7e3f1f7da5b23d430702493ed4fb7f87166': (21 commits)
  HDFFV-9739 only executes H5E tests in production
  Remove link flag from compile command
  fix typo
  Add release note
  Correct attribute location
  HDFFV-9739 fix  copy testfiles command
  HDFFV-9739 remove obsolete test files
  HDFFV-9739 dup test file for concurrent tests
  HDFFV-9739 Fix autotools script
  HDFFV-9739 Change autotools test scripts
  Fix typo
  HDFFV-9739 Update test reference
  Update current windows test machines
  HDFFV-9739 Grab err number before API call
  HDFFV-9739 Add release note
  Adjust test names for concurrent tests
  Fix soversion
  HDFFV-9739 Fix copy name
  HDFFV-9739 factor out tests into separate JUnit
  Updated the threadsafety test to use error macros instead of asserts.
  ...
2018-05-23 14:27:05 -05:00