Commit Graph

23299 Commits

Author SHA1 Message Date
jhendersonHDF
2515bbd922
Fix Java JNI warnings (#4229) 2024-03-24 18:09:05 -07:00
jhendersonHDF
be16b70272
Fix issue with -Werror cleanup sed command in configure.ac (#4223) 2024-03-24 18:06:56 -07:00
jhendersonHDF
638c4d901f
Fix an issue with type size assumptions in h5dumpgentest (#4222) 2024-03-24 15:13:46 -05:00
jhendersonHDF
10e0d39b6d
Avoid file size checks in C++ testhdf5 for certain VFDs (#4226) 2024-03-24 15:13:05 -05:00
bmribler
817175e6e3
Fix broken URLs in documentation (#4214)
Fixes GH-3881 partially.  There are pages that need to be recreated.
2024-03-24 15:12:36 -05:00
bmribler
ce8ad65b4f
Fix broken links (#4224) 2024-03-23 22:33:36 -05:00
jhendersonHDF
cdc5112bae
Backup and clear CMAKE_C_FLAGS before performing _Float16 configure checks (#4217) 2024-03-23 07:17:14 -07:00
Scot Breitenfeld
c1a56f432e
Revert "Addressed Fortran issues with promoted integers and reals via compil…" (#4220)
This reverts commit 06c42ff038.
2024-03-23 07:16:43 -07:00
jhendersonHDF
86ca181bd8
Fix 'make check-vfd' target for Autotools (#4211)
Changes Autotools testing to use HDF5_TEST_DRIVER environment
variable to avoid running tests that don't work well with several
VFDs

Restores old h5_get_vfd_fapl() testing function to setup a FAPL
with a particular VFD

Adds a macro for the default VFD name
2024-03-22 21:31:16 -05:00
bmribler
62a905ae4a
Fix URLs (#4210)
Also removed Copyright.html context because it's no longer valid.
2024-03-22 12:06:09 -05:00
bmribler
174c22df22
Summarize the library version table (#4212)
Fixes GH-3773
2024-03-22 11:54:46 -05:00
Scot Breitenfeld
06c42ff038
Addressed Fortran issues with promoted integers and reals via compilation flags (#4209)
* addressed issue wit promoted integers and reals

* added option to use mpi_f08
2024-03-22 11:52:58 -05:00
Glenn Song
02b5204472
Add clarification for current behavior of H5Get_objtype_by_idx() (#4120) 2024-03-22 11:16:01 -05:00
vchoi-hdfgroup
093cca7ae4
Propagate group creation properties to intermediate groups (#4139) 2024-03-22 08:12:14 -07:00
Dana Robinson
2b6c6590f0
Reverts AC_SYS_LARGEFILE change (#4213)
We previously replaced local macros with AC_SYS_LARGEFILE, which is
unfortunately buggy on some systems and does not correctly set the
necessary defines, despite successfully detecting them.

This restores the previous macro hacks to acsite.m4
2024-03-22 06:00:47 -07:00
jhendersonHDF
c4cc33abe1
Fix issue with Subfiling VFD and multiple opens of same file (#4194)
* Fix issue with Subfiling VFD and multiple opens of same file

* Update H5_subfile_fid_to_context to return error value instead of ID

* Add helper routine to initialize open file mapping
2024-03-21 17:39:13 -07:00
H. Joe Lee
23d3d63323
Use tar.gz extension for ABI reports (#4205) 2024-03-21 13:25:45 -05:00
Allen Byrne
0e179d1f60
Add back snapshot names (#4198) 2024-03-21 09:12:50 -07:00
H. Joe Lee
4ebfbd6370
Fix grammar in README.md release template (#4201) 2024-03-21 09:11:29 -07:00
Allen Byrne
874c473f34
Suggested header footer for NEWSLETTER (#4204)
* Suggested header footer for NEWSLETTER

* Updates

* Add NEWSLETTER.txt to h5vers script
2024-03-21 09:11:10 -07:00
bmribler
20c570b091
Fix H5Pset_efile_prefix documentation error (#4206)
Fixes GH issue #1759
2024-03-21 09:10:55 -07:00
bmribler
0d595d68ca
Update link to Chunking in HDF5 page (#4203) 2024-03-21 09:10:40 -07:00
H. Joe Lee
7f3ab671a5
Remove unused CMake configuration checks (#4199) 2024-03-21 05:31:57 -07:00
Dana Robinson
15608c00b5
Call memset before stat calls (#4202)
The buffers passed to stat-like calls are only partially filled in by
the call, leaving ununitialized memory areas when the stat buffers are
created on the stack.

This change memsets the buffers to 0 before the stat calls, quieting
the -fsanitze=memory complaints.
2024-03-21 05:31:30 -07:00
Allen Byrne
8ecc984fff
Correct download link for develop doxygen (#4196) 2024-03-20 16:45:46 -05:00
jhendersonHDF
2d09c77325
Add NEWSLETTER item about _Float16 support (#4197) 2024-03-20 16:44:54 -05:00
jhendersonHDF
e9f0464352
Add RELEASE.txt note for recent datatype conversion improvements (#4195) 2024-03-20 16:44:34 -05:00
Allen Byrne
85af302798
A path component may include a dot with other characters (#4192) 2024-03-20 16:44:05 -05:00
Allen Byrne
977f4aab14
h5diff compares attribute data like dataset data (#4191)
Updates tools docs to indicate that dataset and attribute data are compared in the same way
2024-03-20 10:54:44 -07:00
Glenn Song
a286066123
Handle certain empty subfiling environment variables (#4038) 2024-03-20 10:52:27 -07:00
mattjala
e99b0af7e0
Skip vlen IO API test for cache VOL (#4135)
* Fix cache VOL segfault in vlen io test
* Skip vlen IO API test
2024-03-20 10:50:40 -07:00
H. Joe Lee
a31da32a2f
Remove broken links (#4187) 2024-03-20 10:49:48 -07:00
Dana Robinson
8e78cfebf8
Add semicolons to the end of HSYS_GOTO_ERROR (#4193)
Looks like we forgot these when we did the other macros.
2024-03-20 09:31:11 -07:00
Dana Robinson
56c527d752
Fixes several MinGW + Autotools issues (#4190)
* Fixes detection of various Windows libraries, etc.
* Corrects alarm(2) configure checks
* Uses Win32 threads by default w/ Pthreads override, if desired
* Set _WIN32_WINNT correctly for MinGW
* Fix setenv(3) wrapper for MinGW, which does not have getenv_s()

MinGW Autotools support is still not Amazing, but this at least
allows the library and tools build and is better about thread-safety
2024-03-20 08:40:09 -07:00
jhendersonHDF
4c0f1468d2
Skip part of dtypes.c _Float16 file size check for certain VFDs (#4182) 2024-03-19 22:06:49 -07:00
Allen Byrne
58b9cc7ccb
last-file.txt should not be created for release workflow (#4185) 2024-03-19 22:04:53 -07:00
jhendersonHDF
1ce55e15c0
Update README.md for coming Complex number support (#4183) 2024-03-19 22:04:07 -07:00
H. Joe Lee
c02be4df09
Add a missing period at the end of sentence. (#4184) 2024-03-19 16:32:53 -07:00
Allen Byrne
025d1e7e82
Exclude shell tests from sanitizers (#4186) 2024-03-19 16:32:20 -07:00
jhendersonHDF
87fb6ed653
Add daily VFD CI workflow (#4176)
Adds testing of Subfiling VFD
2024-03-19 15:14:36 -05:00
Allen Byrne
8f3e544193
Filter plugins updates for registration URL (#4180)
* Update filter plugin URL to new location

* Adjust test array size
2024-03-19 15:11:15 -05:00
bmribler
4af02c213c
Update Release Specific Information link. (#4179) 2024-03-19 09:22:20 -07:00
jhendersonHDF
48d3e48d59
Add const to new _Float16 conversion routine parameters (#4181) 2024-03-19 07:10:57 -07:00
Scot Breitenfeld
8621663b99
Reworked H5Epush_f (#4153) 2024-03-19 04:59:32 -07:00
H. Joe Lee
9806b96ad0
Capitalize linux for consistency (#4178) 2024-03-19 04:58:03 -07:00
Dana Robinson
5bf08d1e8e
Clean up CMake direct VFD handling (#4161)
There's no need to build and run programs, or even check the operating
system. We just need to check for O_DIRECT and posix_memalign().
2024-03-18 21:53:06 -07:00
mattjala
e80272eb21
Add RELEASE.txt note for cmpd segfault fix (#4175)
RELEASE notice for the fix in #3842
2024-03-18 21:52:31 -07:00
jhendersonHDF
c91b3e6168
Remove some H5T_copy calls that are now unnecessary (#4164)
Removes some datatype copying calls that are now unnecessary after
refactoring the datatype conversion code to use pointers internally
rather than IDs

Rewrites the enum conversion function so that it uses cached copies
of the source and destination datatypes in order to avoid modifying
the datatypes passed in

Adds a 'recursive' field to the datatype conversion context which
allows the conversion functions for members of a container datatype
to skip unnecessary repetitive conversion setup code

Changes internal datatype conversion callback functions so that the
source and destination datatype structure pointers are const

Removes some unused and unnecessary internal IDs registered with
H5I_register
2024-03-18 21:44:31 -07:00
jhendersonHDF
330b80a266
Add support for _Float16 16-bit floating point type (#4065)
Fixed some conversion issues with Clang due to problematic undefined
behavior when casting a negative floating-point value to an integer

Fixed a bug in the library's software integer to floating-point
conversion function where a user's conversion exception function
returning H5T_CONV_UNHANDLED in the case of overflows would result in
incorrect data after conversion

Added configure checks for functions and macros related to _Float16
usage since some compilers expose the datatype but not the functions or
macros

Fixed a dt_arith test failure when H5_WANT_DCONV_EXCEPTION isn't defined

Fixed a few warnings from not explicitly casting some _Float16 variables
upwards
2024-03-18 21:36:46 -07:00
Allen Byrne
4e222bf5bb
Add filter plugin user guide text. Fix registered URL in docs (#4169) 2024-03-18 08:36:55 -07:00