Allen Byrne
5222abdd19
Update code owners file with more names ( #1386 )
2022-01-26 09:05:25 -06:00
Allen Byrne
4d45d05078
Fix cmake dynamic analysis on windows ( #1373 )
...
* Fix sanitizer flag form on windows
* Add search paths to windows code-coverage
2022-01-24 07:46:17 -06:00
jhendersonHDF
99d3962a83
Parallel rank0 deadlock fixes ( #1183 )
...
* Fix several places where rank 0 can skip past collective MPI operations on failure
* Committing clang-format changes
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2022-01-22 08:40:33 -06:00
Sean McBride
d45124d708
Open bsd fixes ( #1195 )
2022-01-20 08:38:56 -06:00
Neil Fortner
dd6ad33c75
Implement H5ESget requests function to retrieve requests from an event set ( #1355 )
...
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2022-01-20 07:34:43 -06:00
jhendersonHDF
6c184e28d8
Fix documentation for H5D_space_status_t enum values ( #1372 )
2022-01-19 14:29:37 -06:00
Matt McCormick
1a9662e04c
Do not set CMAKE_INSTALL_PREFIX when built externally ( #1380 )
2022-01-18 22:28:27 -06:00
Allen Byrne
bd37363332
various cleanup java test, test files, comments ( #1363 )
2022-01-18 15:52:01 -06:00
Allen Byrne
8dc72928b8
Develop java newrefs fixes for obj ref datasets ( #1354 )
...
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
2022-01-18 14:02:53 -06:00
Allen Byrne
2f34c433dc
Update the java slf4j logging jars to latest 1.7.33 ( #1369 )
2022-01-18 07:44:11 -06:00
Scot Breitenfeld
8b3c09f780
Updated README.txt to README.md ( #1375 )
...
* H5Lexists docs: Removed reference to 1.8.16 since the change is the 1.8.x releases, HDFFV-11289
* H5Oget_info_by_name, name can be any object, not just a group
* Converted README.txt to README.md and updated files referring to README.txt to README.md.
* removed references to README.txt
* updated MANIFEST
2022-01-14 17:28:04 -06:00
Gerd Heber
e56b0a3d50
Documentation fixes right in time for the holidays ( #1321 )
...
* Sketch of the H5S life cycle.
* Committing clang-format changes
* Fix H5S_UNLIMITED snafu.
* Updated RM template and RM page.
* Added H5S life cycle.
* Committing clang-format changes
* Added H5T life cycle.
* Committing clang-format changes
* Cleaner layout (?)
* Cleaned the H5F life cycle. Called out unfinished biz.
* Committing clang-format changes
* Remaining life cycle skeletons.
* Committing clang-format changes
* Committing clang-format changes
* Added H5Z life cycle.
* Committing clang-format changes
* Added H5G life cycle.
* Committing clang-format changes
* H5 and H5I life cycle updates.
* Committing clang-format changes
* Added H5PL life cycle.
* Committing clang-format changes
* Added H5L life cycle.
* Committing clang-format changes
* Fix for Chris' comment.
* Add a variable for Doxygen pre-processor definitions.
* Forgot to add the H5M API.
* Clarify the H5Z life cycle.
* Committing clang-format changes
* Add H5Zdevelop.h to Doxygen.in. Added H5I life cycle.
* Committing clang-format changes
* Clarified introduction and fixed missing label declaration.
* Added H5O life cycle.
* Committing clang-format changes
* H5O cleanup, part 1.
* Committing clang-format changes
* Cleaned up some of the endless repetition in H5O.
* Committing clang-format changes
* Cookbook & RFC draft layouts.
* Updated manifest.
* Updated the manifest, the example paths, and sketched the 1st recipe.
* Committing clang-format changes
* Outlined two more recipes.
* Committing clang-format changes
* More recipes and RFCs.
* Committing clang-format changes
* Draft of templatized RFC references.
* Another batch of RFC changes.
* Another batch of RFCs.
* Fixed reference.
* RFCs in reverse chronological order.
* First cut of RFCs.
* Fixed reference.
* Updated recipes.
* Updated recipes.
* More RFCs.
* Updated D*PL comments.
* Added H5P descriptions.
* Committing clang-format changes
* H5R life-cycle snapshot.
* Committing clang-format changes
* H5R life-cycle. Added line numbers to life-cycle examples.
* Committing clang-format changes
* Fixed formatting for H5Dchunk_iter().
* Added comment on collective mode requirement w/ compression.
* Simplified API compat. macro dox.
* More API vers. updates.
* Hide the async macro entrails.
* Latest VFD SWMR RFC.
* Create a tag file for permalinks.
* Added TODOs for metadoc.
* Removed duplication.
* Revised RM landing page.
* Trimmed more duplication.
* Committing clang-format changes
* Revised H5D.
* Committing clang-format changes
* Updated survey link.
* Added Doxygen RM entry template link.
* Added the "Multi-Thread HDF5" RFC.
* Added DOXYGEN_TAG_FILE.
* Added selection I/O RFC.
* Added the VFD Sub-filing RFC.
* Updated meta-documentation and added two old presentations.
* Added a few more RFCs (4).
* Fixed MANIFEST.
* Updated meta-documentation.
* Added Filters technical note.
* Fixed MANIFEST.
* Restore the path stripper.
* Experimental full-text search via Google.
* Better full-text search integration.
* Whoops. Forgot this one.
* Oh boy.
* Make CMake happy.
* Added "Debugging HDF5 Applications" technical note.
* Another batch of RFCs.
* Fixes for #1221 .
* Updated overview.
* Fixed image dependencies.
* CMake updates.
* Fixed SET.
* Better?
* Update doxygen/dox/Overview.dox
* Fixed documentation errors. Added missing version info.
* Callback documentation updates.
* Fixed indexing errors in the outline.
* Doxygen-ized the HDF5 glossary.
* Fix a few minor typos
.
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
2022-01-13 22:11:39 -06:00
jhendersonHDF
166ce5b027
Fix H5ACmpio dirty bytes creation debugging ( #1357 )
2022-01-12 16:58:45 -06:00
Allen Byrne
5fffd563de
cmake custom command fix ( #1356 )
...
* From gitlab.kitware.com/third-party/hdf5 rework custom commands
commit/757aa42ebff8c9819c054f5e00559143c60f653d
* Correct stamp file generation
* Needs to support pregenerated H5Tinit.c file
* Adjust custom command for all build systems types
* Custom target only depends on OUTPUT of custom command
2022-01-12 14:27:56 -06:00
Scot Breitenfeld
4aabac62f8
Corrected H5Oget_info parameter description ( #1349 )
...
* H5Lexists docs: Removed reference to 1.8.16 since the change is the 1.8.x releases, HDFFV-11289
* H5Oget_info_by_name, name can be any object, not just a group
2022-01-11 12:17:05 -06:00
jhendersonHDF
a13bf24a39
Use appropriate printf format specifiers for haddr_t and hsize_t types directly ( #1340 )
2022-01-11 12:16:10 -06:00
Scot Breitenfeld
80017cba4f
fixed off-by-one error in h5fget_name_f, HDFFV-11290 ( #1345 )
...
* fixed off-by-one error in h5fget_name_f, HDFFV-11290
* fixed typo
2022-01-10 19:01:14 -06:00
Scot Breitenfeld
54237d777a
H5Lexists docs: Removed reference to 1.8.16 since the change is the 1.8.x releases, HDFFV-11289 ( #1335 )
2022-01-10 18:47:57 -06:00
Allen Byrne
f8f1fefe53
sort out/ref files for line compare ( #1337 )
2022-01-08 11:10:59 -06:00
Allen Byrne
03217eca81
Add tests for H5Ocopy of new object refs ( #1338 )
...
* Add tests for H5Ocopy of new object refs
* Correct class name
* Skip test because of issue with debug assertions
* Update reference file
* Fix object examples for new refs
2022-01-08 08:19:52 -06:00
Baljak
8430e3d661
Fix compilation issues with Mingw ( #1342 )
2022-01-07 22:29:25 -06:00
H. Joe Lee
bf27121b5d
OESS-168: Remove clang warnings. ( #1308 )
2022-01-07 16:30:18 -06:00
H. Joe Lee
58e2157c7e
OESS-168: Remove clang warnings. ( #1305 )
2022-01-07 16:29:56 -06:00
H. Joe Lee
a564ec39af
OESS-168: Remove clang warnings. ( #1304 )
2022-01-07 16:29:30 -06:00
jhendersonHDF
9e6de287e7
Fix usage of several HDfprintf format specifiers after HDfprintf removal ( #1324 )
2022-01-04 11:00:55 -06:00
H. Joe Lee
86b8062699
Fix typo. ( #1303 )
...
chksum -> checksum
2022-01-04 11:00:14 -06:00
H. Joe Lee
227d7d927b
Fix typo. ( #1301 )
...
If the are -> If they are
2022-01-04 10:59:54 -06:00
H. Joe Lee
6fc53b39a2
OESS-168: Remove clang warnings. ( #1300 )
2022-01-04 10:58:58 -06:00
Scot Breitenfeld
cf1aab28fb
Changed to correct return datatype for H5Lexists ( #1330 )
...
* changed to correct return datatype for H5Lexists
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2022-01-04 09:12:11 -06:00
H. Joe Lee
db61a888e6
OESS-168: Remove clang warnings. ( #1295 )
2021-12-15 16:22:04 -06:00
H. Joe Lee
c60bc0a07c
OESS-168: Remove clang warnings. ( #1294 )
2021-12-15 16:21:42 -06:00
H. Joe Lee
69251f58aa
OESS-168: Remove clang warnings. ( #1297 )
2021-12-15 16:21:15 -06:00
H. Joe Lee
10450e0491
OESS-168: Remove clang warnings. ( #1280 )
2021-12-13 17:33:49 -06:00
H. Joe Lee
63687f1a12
OESS-168: Remove clang warnings. ( #1283 )
2021-12-13 17:33:32 -06:00
H. Joe Lee
be856f5ad1
OESS-168: Remove clang warnings. ( #1284 )
2021-12-13 17:33:09 -06:00
jhendersonHDF
300a4e2478
Call FUNC_ENTER immediately in H5_init_library ( #1287 )
2021-12-13 17:31:02 -06:00
jhendersonHDF
ca28e3e631
Fix free list tracking and cleanup cast alignment warnings ( #1288 )
...
* Fix free list tracking and cleanup cast alignment warnings
* Add free list tracking code to H5FL 'arr' routines
2021-12-13 17:30:22 -06:00
Gerd Heber
c88aed84ec
Make it easier to find version specific docs. ( #1260 )
...
* Sketch of the H5S life cycle.
* Committing clang-format changes
* Fix H5S_UNLIMITED snafu.
* Updated RM template and RM page.
* Added H5S life cycle.
* Committing clang-format changes
* Added H5T life cycle.
* Committing clang-format changes
* Cleaner layout (?)
* Cleaned the H5F life cycle. Called out unfinished biz.
* Committing clang-format changes
* Remaining life cycle skeletons.
* Committing clang-format changes
* Committing clang-format changes
* Added H5Z life cycle.
* Committing clang-format changes
* Added H5G life cycle.
* Committing clang-format changes
* H5 and H5I life cycle updates.
* Committing clang-format changes
* Added H5PL life cycle.
* Committing clang-format changes
* Added H5L life cycle.
* Committing clang-format changes
* Fix for Chris' comment.
* Add a variable for Doxygen pre-processor definitions.
* Forgot to add the H5M API.
* Clarify the H5Z life cycle.
* Committing clang-format changes
* Add H5Zdevelop.h to Doxygen.in. Added H5I life cycle.
* Committing clang-format changes
* Clarified introduction and fixed missing label declaration.
* Added H5O life cycle.
* Committing clang-format changes
* H5O cleanup, part 1.
* Committing clang-format changes
* Cleaned up some of the endless repetition in H5O.
* Committing clang-format changes
* Cookbook & RFC draft layouts.
* Updated manifest.
* Updated the manifest, the example paths, and sketched the 1st recipe.
* Committing clang-format changes
* Outlined two more recipes.
* Committing clang-format changes
* More recipes and RFCs.
* Committing clang-format changes
* Draft of templatized RFC references.
* Another batch of RFC changes.
* Another batch of RFCs.
* Fixed reference.
* RFCs in reverse chronological order.
* First cut of RFCs.
* Fixed reference.
* Updated recipes.
* Updated recipes.
* More RFCs.
* Updated D*PL comments.
* Added H5P descriptions.
* Committing clang-format changes
* H5R life-cycle snapshot.
* Committing clang-format changes
* H5R life-cycle. Added line numbers to life-cycle examples.
* Committing clang-format changes
* Fixed formatting for H5Dchunk_iter().
* Added comment on collective mode requirement w/ compression.
* Simplified API compat. macro dox.
* More API vers. updates.
* Hide the async macro entrails.
* Latest VFD SWMR RFC.
* Create a tag file for permalinks.
* Added TODOs for metadoc.
* Removed duplication.
* Revised RM landing page.
* Trimmed more duplication.
* Committing clang-format changes
* Revised H5D.
* Committing clang-format changes
* Updated survey link.
* Added Doxygen RM entry template link.
* Added the "Multi-Thread HDF5" RFC.
* Added DOXYGEN_TAG_FILE.
* Added selection I/O RFC.
* Added the VFD Sub-filing RFC.
* Updated meta-documentation and added two old presentations.
* Added a few more RFCs (4).
* Fixed MANIFEST.
* Updated meta-documentation.
* Added Filters technical note.
* Fixed MANIFEST.
* Restore the path stripper.
* Experimental full-text search via Google.
* Better full-text search integration.
* Whoops. Forgot this one.
* Oh boy.
* Make CMake happy.
* Added "Debugging HDF5 Applications" technical note.
* Another batch of RFCs.
* Fixes for #1221 .
* Updated overview.
* Fixed image dependencies.
* CMake updates.
* Fixed SET.
* Better?
* Update doxygen/dox/Overview.dox
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
2021-12-13 15:13:42 -06:00
jhendersonHDF
dd3c61c384
Fixes for async operations ( #1272 )
...
Setup VOL wrapping context for each "request" callback
Set H5ES_event_t "next" pointer to NULL when appending to event list
2021-12-10 22:48:50 -06:00
jhendersonHDF
c0a13fd9d8
Remove duplicate memcpy in chunk_file_cb ( #1285 )
2021-12-10 20:22:49 -06:00
H. Joe Lee
b54c738822
OESS-168: Remove clang warnings. ( #1282 )
...
* OESS-168: Remove clang warnings.
* OESS-168: Remove commented-out code.
* OESS-168: Address @gnuoyd review.
2021-12-10 16:01:25 -06:00
H. Joe Lee
70e70002c3
Remove extra space. ( #1274 )
2021-12-10 09:45:59 -06:00
H. Joe Lee
8c592a2f64
OESS-168: Remove clang warnings. ( #1277 )
2021-12-10 09:45:14 -06:00
Allen Byrne
5580d7ec81
Fix directory variable in shell scripts ( #1273 )
...
* Fix testswmr scripts with utils/test variable
* Change format of configure var assignment
* quote the variable value in configure
* Use sh.in expected var pattern
* Only ref builddir in script
* Create vars for utils/test and test as H5_<path>_BUILDDIR
* Use abs_top_builddir in test scripts
* Change script var to make it easier to read.
* Use @abs_top_builddir@ directly in paths
* Correct typos/comment
2021-12-09 23:06:53 -06:00
jhendersonHDF
364d8cc3e7
Initialize filter mask and chunk nbytes for 'Single' chunk index ( #1261 )
2021-12-09 15:28:52 -06:00
H. Joe Lee
e36aa06950
OESS-168: Remove clang warnings. ( #1269 )
2021-12-08 16:00:19 -06:00
Allen Byrne
83cf2cb15b
Convert vds swmr test script to powershell ( #1245 )
...
* Convert SWMR shell scripts to Windows powershell.
* Use $LastExitCode instead of $? in script
* Prevent execution in a different window
* Github #969 Use stdout instead of file for configure check (#1089 )
* Use stdout instead of file for configure check
* Make change requested by #1157
* Change fortran to use stderr for configure
* Correct typo
* remove obsolete file check
* Fortran statement fix
* Don't allow H5Pset(get)_all_coll_metadata_ops for DXPLs (#1201 )
* Fixes const warnings in H5ES package (#1211 )
* Quiets a 'set but not used' warning in h5diff_array.c (#1210 )
* Convert vds swmr test script to powershell
* Enable vdsswmr powershell test
* Add configure vdsswmr statement
* Correct powershell script vars
* Convert SWMR shell scripts to Windows powershell.
* Use $LastExitCode instead of $? in script
* Prevent execution in a different window
* Github #969 Use stdout instead of file for configure check (#1089 )
* Use stdout instead of file for configure check
* Make change requested by #1157
* Change fortran to use stderr for configure
* Correct typo
* remove obsolete file check
* Fortran statement fix
* Convert vds swmr test script to powershell
* Enable vdsswmr powershell test
* Add configure vdsswmr statement
* Correct powershell script vars
* Cleanup review issues
* Fix variable assignment
* Change the wait function to pass in the path
* Disable actual test execution until programs fixed
* Adjust copyright text
* Fix spelling
Co-authored-by: jhendersonHDF <jhenderson@hdfgroup.org>
Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
2021-12-08 11:21:15 -06:00
H. Joe Lee
abb05bce6e
OESS-168: Remove clang warnings. ( #1263 )
2021-12-08 08:38:40 -06:00
Larry Knox
40a23b67ea
Correct spelling correction of preceed incorrectly to proceed. Should ( #1268 )
...
* Correct spelling correction of 'preceed' incorrectly to 'proceed'. It should be 'precede'.
2021-12-07 15:07:15 -06:00
Scot Breitenfeld
f859cb732b
Fixed Spelling Errors ( #1166 )
...
* fixed missed closing of a dataset
* fixed missed closing of a dataset
* fixed typo in error return
* Committing clang-format changes
* minor edits
* code format
* Committing clang-format changes
* code format
* minor edit
* switched from using MPI_count, to actual bytes written for H5FD_mpio_debug rw debugging
* Committing clang-format changes
* changed size_i in printf to reflect the I/O.
* Committing clang-format changes
* Fixed seg fault with xlf on BE with -qintsize=8
* fixed error function string
* spelling corrections via codespell, added new spell check github actions
* Committing clang-format changes
* misc
* misc
* misc
* misc
* misc
* misc
* misc
* misc
* misc
* misc
* misc
* misc
* misc
* misc
* Committing clang-format changes
* misc
* misc
* misc
* misc
* misc
* misc
* Committing clang-format changes
* misc
* work around for https://github.com/codespell-project/codespell/issues/2137
* misc
* added missing file
* misc
* misc.
* misc
* switch to using Codespell with GitHub Actions
* misc.
* misc.
* fixed more sp errors
* Fix new typos found by codespell.
* fixed proceed with precede
* fixed variable in fortran test
* fixed minnum
* updated spelling list
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
2021-12-07 08:27:29 -06:00
