Description:
When shrinking a chunked dataset, the library fills in the unused parts of
chunks that have been shrunk. The fill value buffer allocated for this purpose
had a maximum size of 1 MB, but the fill was performed in a single operation.
Therefore, if the amount of unused space in a chunk after being shrunk was
greater than 1 MB, the library would read off the end of the fill value buffer.
Changed the maximum fill buffer size to be equal to the chunk size.
Tested: durandal; jam, koala, heiwa (h5committest)
Rearrange checks for reasons why we break collective I/O back to independent
I/O into "global" and "local" sections. We should try to minimize the checks
in the "local" section...
Tested on:
Mac OS X/32 10.7.2 (amazon) w/parallel
(too minor to require h5committest)
Changed, INTENT of flag to be OUT instead of IN for h5dget_space_status_f, the value gets changed so it should have intent(OUT), it
is correct in the documentation.
Tested: jam (gnu, intel, pgi)
Revert part of r21275 (F2003 configure change) which unintentionally
removed a line from configure.in that sets FC=no when fortran
is not enabled. This ensures that configure doesn't run
compiler checks on a fortran compiler when it won't be used.
(and can cause failures in configure when no fortran compiler is
present as well as issues with the resulting src/Makefile when
building DLLs on Cygwin)
Tested:
h5committest; manually on jam & bangan (Cygwin).
Description: removed the temporary patch of
RUNSERIAL=${RUNSERIAL="env LDR_CNTRL=MAXDATA=0x20000000@DSA"}
and similaryly for RUNPARALLEL since the h5repack test failure
was fixed and this patch is no longer needed. (IBM also advices
not to hardset MAXDATA if possible.)
Tested: NASA G-ADA AIX machine, both 32 and 64 bits modes.
(No parallel test because not able to build or run MPI executables yet.)
Removed using INT() on an already INTEGER variable on the input argument to the verify routine, which was causing wrong verify results for the two integers on a Mac.
Tested: fred (gnu) in production mode.
> make failed:
> "../../../hdf5/fortran/test/fortranlib_test_1_8.f90", line 642.15:
> 1513-041 (S) Arguments of the wrong type were specified for the
> INTRINSIC procedure "mod".
Fixed by defining both arguments in MOD as integer size_t
Tested: jam (gfortran, intel)
*Hostname: nsipada0X:
"../../../hdf5/fortran/src/H5Ef.c", line 301.40: 1506-280 (E)
Function argument
assignment between types "int(*)(int,void*)" and "int(*)(int,struct
{...}*)" is
not allowed.
Fixed by casting has H5E_auto2_t.
tested: jam (gfortran, intel)
Don't check dataset storage size for compressed datasets with region
reference datatypes. (The address of the region reference type in the file
varies and affects the compressed size)
Tested on:
Mac OS X/32 10.7.2 (amazon) w/debug & production + check-vfd
HDFFV-7770 - h5diff segmentation fault on JPSS files
Description:
Fixed segfault over non-comparable attribute with different dimention or
rank, along with '-c' option to display details.
Tested:
jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows, Cmake
