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Author SHA1 Message Date
Dana Robinson
4f231ddc9b [svn-r27214] Fixed a bug on Windows where dcpls were set to be chunked and not virtual. This was due to a simple copy-paste issue in the initializer that is used when C99 initializers are not available. 
Also fixed a dims array size error in the vds test.

Tested on: 64-bit Win7 with VS2013
 2015-06-16 12:02:35 -05:00
Mohamad Chaarawi
afb85e30e5 [svn-r27207] use "closing" flag instead of always TRUE in the truncate call. 2015-06-15 14:29:30 -05:00
Mohamad Chaarawi
f34bdad87c [svn-r27206] fix for HDFFV-9418. 
- Moving truncate to H5F_flush() where it was done a long time ago. 
 - Add a second H5AC_flush() call after the truncate is done to make sure we write the correct EOA.

tested with h5committest
 2015-06-15 13:35:00 -05:00
Quincey Koziol
adbb64c6cd [svn-r27204] Description: 
Clean up compiler warnings before merging in v3 metadata cache changes
from branch.

Tested on:
    MacOSX/64 10.10.3 (amazon) w/serial & parallel
    Linux/32 2.6.x (jam) w/serial & parallel
 2015-06-15 11:07:38 -05:00
Allen Byrne
b5a6740703 [svn-r27202] Except one file is used by other tests! 2015-06-15 08:10:14 -05:00
Allen Byrne
83208611cb [svn-r27201] Changed location of packed bits testfiles 2015-06-15 07:59:14 -05:00
Quincey Koziol
65e76690fd [svn-r27199] Description: 
Large code cleanups and optimizations, in preparation for the upcoming
v3 metadata cache merge.

Tested on:
    MacOSX/64 10.10.3 (amazon) w/serial & parallel
    Linux/32 2.6.x (jam) w/serial & parallel
 2015-06-12 22:40:33 -05:00
Vailin Choi
e29904660a [svn-r27198] Set "entire_chunk" to false in H5D__chunk_write() for point selection as duplicate points are not checked to determine 
that it is really an "entire chunk".  The bug appears from running the mdset.c test. This is a short-term fix for the problem.
 2015-06-12 17:55:18 -05:00
Neil Fortner
4117cfe2b9 [svn-r27197] Improve performance of "printf" VDS with selections in the file space - the 
library no longer iterates over all source datasets in the printf mapping, it
now only looks at the ones that could be involved in I/O (the ones whose bounds
overlap with the selection in the unlimited dimension).

Tested: ummon
 2015-06-12 17:04:35 -05:00
Allen Byrne
d92c74b4aa [svn-r27196] Move pbbits file to subfolder 2015-06-12 16:33:27 -05:00
Allen Byrne
78e128c544 [svn-r27195] Add h5dump cmake tests and files. 
Add tools gen cmake files
move testfiles for pbits to subdir as well as vds

Tested: local linux
 2015-06-12 16:29:20 -05:00
Neil Fortner
9786fe2f61 [svn-r27192] Improve support for printf selections (support partial blocks with 
H5_VDS_FIRST_MISSING)
Add test for this
Rework VDS code to not depend on unlimited selections having a "clipped" state
in preparation for removing the clipped state from unlimited selections.
Other bug fixes/cleanup

Tested: Kubuntu 64 (home computer)
 2015-06-11 23:26:53 -05:00
Dana Robinson
aa4e3e3985 [svn-r27191] Merged r26781 to r27185 from trunk 
Tested on: 64-bit Ubuntu Linux VM w/ gcc 4.8.2
    (C++ and Fortran 2003 also tested)
 2015-06-11 14:18:52 -05:00
Mohamad Chaarawi
b9f2a18b5a [svn-r27185] fix more instances where both mpi is_initialized and is_finalized need to be checked before making any MPI calls. 
tested with h5committest.
 2015-06-10 12:57:32 -05:00
Neil Fortner
bf8942c7e9 [svn-r27174] Fix bug in H5S__hyper_project_intersection that affected empty selections. 
Tested: ummon
 2015-06-09 15:52:03 -05:00
Allen Byrne
0f4e97907c [svn-r27172] Change disable to skip big test on cygwin 2015-06-09 13:52:43 -05:00
Allen Byrne
84311eb701 [svn-r27171] Disable big test on cygwin 2015-06-09 13:48:03 -05:00
Dana Robinson
349ad0d74d [svn-r27166] Updated MANIFEST to include test/vds.c and tools/misc/vds files. 2015-06-08 22:22:43 -05:00
Mohamad Chaarawi
bf3b382df7 [svn-r27163] update manifest for newly added file. 2015-06-08 16:10:14 -05:00
Mohamad Chaarawi
929e8ce128 [svn-r27162] fix for HDFFV-9412: 
- Check for mpi is_initialized and is_finalized before making MPI calls in init/terminate of HDF5.
- Add a test to make sure we can make serial HDF5 calls from rank 0 after MPI_Finalize is called.

tested with h5committest
 2015-06-08 15:52:48 -05:00
Dana Robinson
6c81df0a27 [svn-r27161] Added makefiles to tools/misc/vds to build the generators. 
Tested on: jam
 2015-06-08 04:56:49 -05:00
Dana Robinson
a6442037e4 [svn-r27160] Added VDS generator files. 
The Makefiles have not been updated so they don't compile yet.
 2015-06-08 04:10:50 -05:00
HDF Tester
02e9a43900 [svn-r27159] Snapshot version 1.9 release 221 2015-06-07 19:01:32 -05:00
Mohamad Chaarawi
4a2bee5cd8 [svn-r27158] missed rename if UNUSED to H5_ATTR_UNUSED in trace script. 2015-06-07 18:03:42 -05:00
Neil Fortner
5eae97bca6 [svn-r27155] Change H5Pget_virtual_view to return herr_t and take a pointer to the view as a 
parameter.  Also fix bug in H5Pget_virtual_printf_gap.

Tested: jam
 2015-06-05 17:38:13 -05:00
Neil Fortner
c27904bc5f [svn-r27153] Implement fill value support for VDS. 
Add testing for this.
Fix bug in printf string parsing.
Add test for this.
Other minor fixes/cleanup.

Tested: ummon
 2015-06-05 16:55:24 -05:00
Dana Robinson
8f74cc85d8 [svn-r27152] Updated bin/trace and src/H5trace.c to handle the H5D_vds_view_t 
enum type.

Tested on: jam
 2015-06-04 15:47:04 -05:00
Dana Robinson
fad77fd2c2 [svn-r27150] Added an empty VDS testfile generator to tools/misc directory. 
test/Makefile.in was updated due to changes in the Makefile.am
file that missed a reconfigure. The changes just added a few
VDS test files to the deletion list.

Note that there are trace issues with a new VDS struct that
show up when running bin/reconfigure. I reverted these for
fixing at a future date.

Tested on: jam
 2015-06-04 14:46:50 -05:00
Neil Fortner
5d12a79db2 [svn-r27145] Add some testing for printf-style source dataset name resolution. 
Various bug fixes, including a temporary fix for printf with FIRST_MISSING view.
Other cleanup.

Tested: ummon
 2015-06-03 13:00:58 -05:00
Quincey Koziol
235b3b86c1 [svn-r27144] Description: 
Normalize trunk against the metadata_cache_merge branch, in preparation
for merging the branch into the trunk.

Tested on:
    MacOSX/64 10.10.3 (amazon) w/serial & parallel
    Linux/64 2.6.x (koala) w/serial
    Linux/32 2.6.x (jam) w/serial & parallel
 2015-06-03 10:35:28 -05:00
Allen Byrne
e2fa1a7555 [svn-r27142] Add optional variable for version extension 2015-06-03 09:32:56 -05:00
Mohamad Chaarawi
fc45d5fcb0 [svn-r27133] - Add a new attribute function characterstic for format: 
* H5_ATTR_FORMAT(X,Y,Z)  __attribute__((format(X, Y, Z)))
- Rename UNUSED attribute characterstic to H5_ATTR_UNUSED.
- Rename NORETURN attribute characterstic to H5_ATTR_NORETURN

tested with h5committest.
 2015-06-01 14:38:09 -05:00
Jerome Soumagne
92e3188ff3 [svn-r27130] Fix warnings in H5Tconv 
Remove H5T_INIT_INTERFACE from H5Tconv

Add macro in H5Tconv to check overflow when using H5T_CONV_uS
 2015-06-01 10:44:42 -05:00
Jerome Soumagne
1ac9bcaaa6 [svn-r27129] Fix warnings in H5Tbit 2015-06-01 10:43:13 -05:00
Jerome Soumagne
9ff4558203 [svn-r27128] Fix warnings in H5Tdbg 2015-06-01 10:41:33 -05:00
HDF Tester
78c4a8f4c6 [svn-r27127] Snapshot version 1.9 release 220 2015-05-31 19:02:10 -05:00
Scot Breitenfeld
ae82b5232a [svn-r27114] Fixed spelling and which file is created with the program. 
Tested: none -- comments only.
 2015-05-27 15:31:39 -05:00
Mohamad Chaarawi
cea93c4a37 [svn-r27111] move undef of __attribute__ back to private and remove its usage from public routines. 2015-05-26 09:23:27 -05:00
HDF Tester
965e459a98 [svn-r27110] Snapshot version 1.9 release 219 2015-05-24 18:59:54 -05:00
Neil Fortner
9a8c664ff0 [svn-r27104] Add support for printf-style source dataset name resolution. 
Passes use case test, no regression tests yet.
Add functions H5Pset/get_virtual_printf_gap (not tested yet).
Other minor fixes/cleanup.

Tested: ummon
 2015-05-22 11:35:58 -05:00
Neil Fortner
948722cde8 [svn-r27103] Merge revisions 26780 through 27102 from trunk to vds branch. 
Tested: ummon
 2015-05-21 12:13:16 -05:00
Dana Robinson
194d647721 [svn-r27097] Fixed a typo in test/th5o.c that caused the wrong property list 
ID to be checked.

Tested on: h5committest
 2015-05-18 08:00:54 -05:00
HDF Tester
ab80cbadfd [svn-r27092] Snapshot version 1.9 release 218 2015-05-17 18:59:27 -05:00
Mohamad Chaarawi
bf53b8c95c [svn-r27089] move private functions from H5A.c to H5Aint.c 2015-05-15 11:49:23 -05:00
Allen Byrne
8060c37ef4 [svn-r27087] Add changes for debug flags 2015-05-15 09:38:38 -05:00
Quincey Koziol
8be8a708a3 [svn-r27084] Description: 
Clean up cache tests, to align w/v3 metadata cache changes

Tested on:
    MacOSX/64 10.10.3 (amazon) w/serial & parallel
    Linux/32 2.6.* (jam) w/serial & parallel
 2015-05-14 21:16:09 -05:00
Quincey Koziol
20aa560825 [svn-r27083] Description: 
Clean up H5SM interface, to align w/v3 metadata cache changes

Tested on:
    MacOSX/64 10.10.3 (amazon) w/serial & parallel
    Linux/32 2.6.* (jam) w/serial & parallel
 2015-05-14 21:14:13 -05:00
Quincey Koziol
197fa23dae [svn-r27082] Description: 
Clean up H5O interface, to align w/v3 metadata cache changes

Tested on:
    MacOSX/64 10.10.3 (amazon) w/serial & parallel
    Linux/32 2.6.* (jam) w/serial & parallel
 2015-05-14 21:12:24 -05:00
Quincey Koziol
2e9d48a551 [svn-r27081] Description: 
Clean up H5HL interface, to align w/v3 metadata cache changes

Tested on:
    MacOSX/64 10.10.3 (amazon) w/serial & parallel
    Linux/32 2.6.* (jam) w/serial & parallel
 2015-05-14 21:10:46 -05:00
Quincey Koziol
8cc79c0825 [svn-r27080] Description: 
Clean up H5HF interface, to align w/v3 metadata cache changes

Tested on:
    MacOSX/64 10.10.3 (amazon) w/serial & parallel
    Linux/32 2.6.* (jam) w/serial & parallel
 2015-05-14 21:08:27 -05:00