Commit Graph

2688 Commits

Author SHA1 Message Date
Quincey Koziol
4f831405cb [svn-r29779] Description:
Bring over some of the tool testing for the new chunk indices.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
2016-04-24 03:21:09 -05:00
Scot Breitenfeld
988c33527f [svn-r29745] HDFFV-9767
h5perf output; should be MB not MBs

FIX: changed output text from MBs to MB and KBs to KB
2016-04-19 10:00:53 -05:00
Quincey Koziol
be24e91aec [svn-r29714] Description:
Switch to use internal DXPL ID, to align with recent changes within the
library.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial & parallel
    (Too minor to require h5committest)
2016-04-16 03:36:47 -05:00
Allen Byrne
18e360b9fa [svn-r29683] HDFFV-1956: h5diff will warn if a dataset is virtual instead of failing. h5diff does not consider the layout type when comparing datasets.
SKIP h5repack VDS tests until h5repack is fixed.
remove h5repack fix ddl files needed when h5repack VDS fix is implemented.
2016-04-11 09:21:37 -05:00
Allen Byrne
0ff3a85a48 [svn-r29681] HDFFV-1956: h5diff will warn if a dataset is virtual instead of failing. h5diff does not consider the layout type when comparing datasets.
SKIP h5repack VDS tests until h5repack is fixed.
Additional tests to be skipped
2016-04-11 08:53:55 -05:00
Allen Byrne
7fe0324fc4 [svn-r29680] HDFFV-1956: h5diff will warn if a dataset is virtual instead of failing. h5diff does not consider the layout type when comparing datasets.
SKIP h5repack VDS tests until h5repack is fixed.
2016-04-11 08:45:33 -05:00
Larry Knox
921b68afa7 [svn-r29678] Revert r29672 changes to h5diff.
Tested h5committest.new
2016-04-09 13:48:43 -05:00
Allen Byrne
1a5ee65d50 [svn-r29672] HDFFV-1956: h5diff will warn if a dataset is virtual instead of failing. h5diff does not consider the layout type when comparing datasets. 2016-04-08 12:43:59 -05:00
Dana Robinson
305d218725 [svn-r29665] Added new chunk index types to h5debug.
Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1
           Autotools serial
2016-04-07 15:31:17 -05:00
Allen Byrne
8e41b14811 [svn-r29601] Cleanup case of CMake commands in tools.
Update CTestCustom file for new tests.
Add connection from HDF5_ENABLE_USING_MEMCHECKER cmake option to library define USING_MEMCHECKER.
2016-03-31 09:02:24 -05:00
Dana Robinson
8ed8520c19 [svn-r29537] Added "latest format" tests to h5copy and h5repack from revise_chunks.
Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1
           autotools serial
           cmake serial
2016-03-23 14:32:59 -05:00
Dana Robinson
5a9a9e8f0e [svn-r29534] Normalization w/ revise_chunks in preparation for big merge.
tools directory

Also fixes a minor Java test output error.

Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1
           autotools serial w/ Java, Fortran, & C++
2016-03-23 12:42:06 -05:00
Dana Robinson
7f641b520d [svn-r29482] Switched a few Visual Studio #ifdefs to Win32
Tested on 64-bit Win10 w/ VS 2015 Pro
2016-03-21 11:36:23 -05:00
Allen Byrne
40cdbe0b8d [svn-r29274] HDFFV-9698: fix subsetting issues with h5dump 2016-03-04 15:41:12 -05:00
Allen Byrne
49e774296b [svn-r29262] HDFFV-9241: Print fill value as "DEFAULT" instead of value 0 2016-03-03 11:02:55 -05:00
Allen Byrne
d0444d4f2b [svn-r29261] HDFFV-9241: Print fill value as "DEFAULT" instead of value 0 2016-03-03 10:27:48 -05:00
Allen Byrne
28ee82a07b [svn-r29259] HDFFV-9066: Improve h5dump usage statement for -O F, -ddl=F option. 2016-03-03 09:07:49 -05:00
Allen Byrne
f0a7f5978e [svn-r29257] HDFFV-9705: h5dump should not print filters or allocation time info for VDS files 2016-03-03 08:56:44 -05:00
Allen Byrne
8538eedde3 [svn-r29234] Fix H5 LIB OPTIONS macro for correct ARGN support 2016-02-29 16:24:31 -05:00
Allen Byrne
a1617b7cdb [svn-r29222] HDFFV-9570: Fix segfault when optional args are last option on command line.
Tested: java_merge DT
2016-02-28 12:58:37 -05:00
Allen Byrne
f7689087de [svn-r29186] HDFFV-9654: add VDS options to h5dump
includes new data files
2016-02-23 15:23:46 -05:00
Dana Robinson
7511d8b469 [svn-r29179] Revert of 29177 which breaks the autotools build.
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
           autotools serial
2016-02-22 15:32:01 -05:00
Allen Byrne
910d420409 [svn-r29177] HDFFV-9654: add VDS options to h5dump 2016-02-22 11:57:07 -05:00
Mohamad Chaarawi
63c90e5c67 [svn-r29081] - merge in the phdf5_metadata_opt/ branch with the collective metadata optimizations.
- rename H5AC_dxpl_id to H5AC_ind_read_dxpl_id and update all usage in the library

tested on bb-8 with parallel and serial.
2016-02-10 15:48:34 -05:00
Mohamad Chaarawi
48bebcc39e [svn-r29057] added dxpl type checking when debug mode is enabled (H5_DEBUG_BUILD)
tested on bb-8 with Serial and Parallel, debug and production builds.
2016-02-07 10:37:33 -05:00
Quincey Koziol
b9763eee6d [svn-r28918] Description:
I missed changes to a couple of expected error output files with the last
checkin.

Tested on:
    MacOSX/64 10.11.2 (amazon) w/serial & parallel
    (h5committest forthcoming)
2016-01-15 18:28:08 -05:00
Allen Byrne
94d03fd874 [svn-r28885] Change TOOLTEST5 to TOOLTEST3, which does not post-process the files. 2016-01-13 12:24:20 -05:00
Allen Byrne
0115366eee [svn-r28868] HDFFV-9639: autotools script update 2016-01-12 15:48:23 -05:00
Allen Byrne
24443da316 [svn-r28865] HDFFV-9639: Fix double-free error by setting freed var to NULL.
Verified issue with "h5dump tgroup.h5 non_existing.h5"
Applied patch and retested.
2016-01-12 15:31:59 -05:00
Quincey Koziol
d4f3d93b8d [svn-r28769] Description:
More memory cleanups and leak elimination.

Tested on:
    MacOSX/64 10.11.2 (amazon) w/serial & parallel
    (h5committest forthcoming)
2016-01-02 20:03:08 -05:00
Quincey Koziol
f60170dac7 [svn-r28761] Description:
Clean up many mismatches between malloc/free and H5MM_malloc/H5MM_xfree
in the library and tests (and use of H5free_memory and H5Dvlen_reclaim).  Also
make H5Ocopy use a private version of H5Lexists, which doesn't internally
throw (and suppress) errors when an object (or the path to it) isn't found in
the destination.

Tested on:
    MacOSX/64 10.11.2 (amazon) w/serial & parallel
    (h5committest forthcoming)
2016-01-01 01:28:04 -05:00
Quincey Koziol
b5504be6cc [svn-r28742] Description:
Add 'update' operation to v2 B-trees, which will insert a new record, or
modify an existing one, depending on if the record exists or not.

Tested on:
    MacOSX/64 10.11.2 (amazon) w/serial & parallel
    (h5committest forthcoming)
2015-12-29 12:06:36 -05:00
Dana Robinson
0a00732c4d [svn-r28696] Minor normalization with revise_chunks.
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
           serial only
2015-12-17 01:31:27 -05:00
Larry Knox
b3426914a8 [svn-r28669] Changes to correct errors found with -ansi flag.
h5tools_dump.c
    Removed 3 lines commented out with //.
h5_vds-percival-unlim.c
    Changed C++-style comment to C-style comment.

Tested with h5committest.new.
2015-12-15 15:52:12 -05:00
Dana Robinson
aa4fc58ac9 [svn-r28599] Normalization of tools with revise_chunks.
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
           serial only, autotools and CMake (3.3.2)
2015-12-11 14:14:43 -05:00
Allen Byrne
71ee2155d4 [svn-r28377] CMake 3.4 policy change 2015-11-17 10:07:49 -05:00
Allen Byrne
3edabec156 [svn-r28176] HDFFV-9550: Add VS2015 fix for change of standard format. 2015-10-21 16:36:36 -05:00
Jerome Soumagne
2094d86461 [svn-r28138] Add first support for _Bool and make hbool_t a "real" _Bool if available
Fix tests accordingly and fix misuse of hbool_t in various places

Fix initialization of H5Pgcpl/ocpl structs in property decoding routines

Tested on:
    Linux/32 (jam)
    Linux/64 (platypus)
    Linux/PPC64 (ostrich)
    MacOSX/64 10.11
2015-10-20 01:28:17 -05:00
Larry Knox
d72281dff4 [svn-r28115] Replace unreadable, unused test file with newly generated file that can be read by h5dump from HDF5 1.6.10, 1.8.6, 1.8.16 and trunk. 2015-10-16 17:11:26 -05:00
Quincey Koziol
cd49e8a2ab [svn-r28025] Description:
Switch 'int' flag variables to booleans.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & paralel
    (too minor for h5committest)
2015-10-10 21:42:20 -05:00
Quincey Koziol
d3c6b4ad72 [svn-r27848] Description:
Clean up warnings and some normalization against trunk.

Tested:
    McaOSX/64 10.10.5 (amazon) w/serial & parallel
    (h5committest not required on this branch)
2015-09-21 19:21:18 -05:00
Dana Robinson
209df7c3b0 [svn-r27839] Removed generated autotools stragglers missed in trunk sync. 2015-09-21 03:36:01 -05:00
Quincey Koziol
0695d6366a [svn-r27835] Description:
Sync w/trunk.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & parallel
    (h5committest not required on this branch)
2015-09-20 21:18:45 -05:00
Dana Robinson
944e42d5ea [svn-r27818] Minor warning fixes.
Tested on: h5committest
2015-09-17 12:21:34 -05:00
Dana Robinson
d90e4acfa7 [svn-r27801] Minor warning fixes in the tools.
Tested on: jam (too minor for h5committest)
2015-09-16 10:23:16 -05:00
Dana Robinson
9af344117c [svn-r27794] Reintegration merge of features/autotools_rework branch with trunk
NOTES:

- Developers will have to run autogen.sh before building with the autotools.

- autogen.sh takes the -p option to mimic the old bin/reconfigure behavior.

- The generated error, overflow and version headers have been left in place.

- The generated H5LT parser code has also been left in place.

- There are no changes for CMake users at this time.

Tested on: h5committest
2015-09-15 15:38:57 -05:00
Quincey Koziol
1023374492 [svn-r27768] Description:
Complete revamp of package initialization/shutdown mechanism in the library.
Each package now has a single init/term routine.

    This new way should avoid packages being re-initialized during library
shutdown and is also be _much_ more proactive about giving feedback for
resource leaks internal to the library.

    Introduces a new "module" header file for packages in the library
(e.g src/H5Fmodule.h) which sets up some necessary package configuration macros
for the FUNC_ENTER/LEAVE macros.  (The VFL drivers have their own slightly
modified version of this header, src/H5FDdrvr_module.h)

    Also cleaned up a bunch of resources leaks all across the library and tests,
along with addressing many warnings, as I encountered them.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & parallel
    Linux/64 3.10.x (kituo) w/serial & parallel
    Linux/64 2.6.x (ostrich) w/serial
2015-09-13 22:58:59 -05:00
Dana Robinson
122bf84bb3 [svn-r27760] Brought r27631-27755 over from the trunk.
tested on: jam
2015-09-11 09:08:04 -05:00
Allen Byrne
10da31a926 [svn-r27745] Merge trunk revision 27744 2015-09-10 09:11:17 -05:00
Allen Byrne
e5dbc90ad2 [svn-r27656] HDFFV-9515: repack failed with 5 digit filter ids because a local variable in the parse routine was not large enough.
Tested: local linux and windows
2015-09-01 13:35:16 -05:00