Commit Graph

14401 Commits

Author SHA1 Message Date
Allen Byrne
4d0187a483 [svn-r27465] Merge dual-binary CMake changes 2015-08-05 10:56:58 -05:00
Dana Robinson
ec5d13d65b [svn-r27460] Minor code cleanup in test/trefer.c
- Fixed an out-of-range char assignment.

- Added a couple of malloc() casts.

Tested on: jam (minor change, tests only)
2015-08-03 22:00:45 -05:00
Dana Robinson
117b936032 [svn-r27459] Merge of 27411 from revise_chunks.
Renamed a few "h5tri_t extended" variables to "h5tri_t was_extended".
Apparently, "extended" is a typedef name someplace in the headers used
on Solaris, which causes potentially confusing warnings to be emitted.

Tested on: h5committest
           Solaris w/ Solaris Studio (emu)
2015-08-03 21:19:25 -05:00
HDF Tester
f56de26444 [svn-r27432] Snapshot version 1.9 release 226 2015-07-26 19:13:36 -05:00
Albert Cheng
ac5a796db2 [svn-r27428] Bug fix: DAILYTEST-170
Description:
    XL compilers in ostrich (PowerPC64 linux) fail in test/dt_arith
    because of the removal of the LLONG_TO_LDOUBLE_CORRECT (removed in
    r26625) and LDOUBLE_TO_LLONG_ACCURATE (removed in r26623).

Solution:
    Reverse revisions
	r26623: bring back LDOUBLE_TO_LLONG_ACCURATE configure macro
	r26625: bring back LLONG_TO_LDOUBLE_CORRECT configure macro
	r26627: bring back WANT_DATA_ACCURACY configure macro which is
	    used together with the above two macros. This also brings
	    back the enable-dconv-accuracy configure option.

Tested:
    h5committested.
    Also tested in ostrich using the XL compilers.
2015-07-24 02:04:52 -05:00
Mohamad Chaarawi
81d3377737 [svn-r27427] - free comm keyval after setting atribute on comm_self
- free allocated buffer in t_file_image test

tested on jam with parallel.
2015-07-23 10:03:43 -05:00
Neil Fortner
f550bc0cea [svn-r27415] Fix potential error with H5I_clear_type which could occur when a callback closed
a different ID in the same type.  Added a new skiplist routine,
H5SL_try_free_safe, which iterates over items, freeing some of them, and which
intercepts and defers attempts to remove from the list outside of the main
iteration.  Changed H5I_clear_type to use this function.

Tested: jam, koala, ostrich (h5committest); ummon
2015-07-20 17:21:36 -05:00
HDF Tester
74e4cd4d21 [svn-r27412] Snapshot version 1.9 release 225 2015-07-19 19:11:50 -05:00
Dana Robinson
94a6e02b3d [svn-r27407] Updated the H5_ATTR_* macros.
- Updated the preprocessor logic that defines the H5_ATTR_* macros. The Solaris
  Studio compiler understands __attribute__ but not the specific attributes
  that we use. The H5_ATTR_* macros are now defined as blank with that
  compiler which significantly cleans up the warnings, making debugging
  easier.

- Replaced a few lingering __attribute__ macros with H5_ATTR_* markup.

Tested on: h5committest
           Solaris w/ Solaris Studio (emu)
2015-07-18 00:40:06 -05:00
HDF Tester
12b86abf18 [svn-r27372] Snapshot version 1.9 release 224 2015-07-12 19:12:22 -05:00
Allen Byrne
8bbe712961 [svn-r27364] Add Mac Framework support 2015-07-09 11:56:16 -05:00
Allen Byrne
7a72d82cda [svn-r27346] remove reference to file removed from cmake_ext_mod 2015-07-08 08:22:07 -05:00
HDF Tester
f37ae9d9f9 [svn-r27339] Snapshot version 1.9 release 223 2015-07-05 19:12:35 -05:00
Jerome Soumagne
4e25ab6ebd [svn-r27332] Fix src/CMakeLists.txt after Quincey's metadata cache changes 2015-07-02 17:13:09 -05:00
Neil Fortner
9804fed58f [svn-r27320] Fix uninitialized memory write valgrind errors in trunk. Did this by modifying
metadata cache clients to clear unused memory in the buffer after serializing.

Tested: ummon; jam, koala, ostrich (h5committest)
2015-07-01 17:08:11 -05:00
Allen Byrne
980db9e85b [svn-r27313] switch internal cdash URL 2015-06-30 16:18:15 -05:00
Quincey Koziol
1a5c36ce7e [svn-r27298] Description:
Separate H5AC layer from using package-scoped pieces of the H5C layer,
moving from including H5Cpkg.h to H5Cprivate.h.

Tested on:
    MacOSX/64 10.10.3 (amazon) w/serial, parallel & production
    Linux/32 2.6.x (jam) w/serial & parallel
2015-06-29 17:17:24 -05:00
Quincey Koziol
ad37464819 [svn-r27296] Description:
Correct error with braces around macro (in production builds), also clean
up a few warnings.

Tested on:
    MacOSX/64 10.10.3 (amazon) w/serial, parallel & production
    Linux/32 2.6 (jam) w/serial & parallel
2015-06-29 15:22:30 -05:00
Quincey Koziol
89115b11b0 [svn-r27294] Description:
Clean up parameters to H5C__flush_single_entry: accept cache entry instead
of address, and make new flag for deleting entry from skiplist on destroy
instead of a separate parameter to the routine.

Tested on:
    MacOSX/64 10.10.3 (amazon) w/serial & parallel
    Linux/32 2.6.x (jam) w/serial & parallel
2015-06-29 10:19:34 -05:00
Quincey Koziol
8e94745298 [svn-r27293] Description:
Split parallel metadata cache code into separate source code modules.

Tested on:
    MacOSX/64 10.10.3 (amazon) w/serial & parallel
    (too minor for h5committest)
2015-06-27 11:45:21 -05:00
Quincey Koziol
58a95d0d4a [svn-r27292] Description:
Bring 'fail if unknown always' object header message flag from the
avoid_truncate branch, strengthen error checking for unknown messages, and try
to catch object header code configurations at compile time (instead of runtime).

Tested on:
    MacOSX/64 10.10.3 (amazon) w/serial & parallel
    (h5committest forthcoming)
2015-06-27 00:51:04 -05:00
Larry Knox
df8bd7ccd6 [svn-r27283] Change generic directory in tarballs to hdfsrc.
Remove some  commented lines.
2015-06-25 11:39:19 -05:00
Larry Knox
5dac57c5c4 [svn-r27280] Add temporary file to create tarballs for buildbot (and possibly all) daily testing. When the behavior is acceptable, the changes should be merged into the regular release script as a --revision option. 2015-06-24 16:45:32 -05:00
Dana Robinson
e030fe2751 [svn-r27278] Merge of 27270 from trunk. Fixes HDFFV-9119 and HDFFV-9421.
Changes that allow the autotools to correctly deal with inline
functions.

- Inline markup schemes are now checked with AC_COMPILE_IFELSE
  tests instead of AC_C_INLINE.

- The inline designator is now H5_INLINE instead of H5_inline.
  This is now set in H5private.h instead of H5pubconf.h.

Tested on: h5committest
2015-06-24 13:53:43 -05:00
Mohamad Chaarawi
a07297e90d [svn-r27271] fix a few warnings in t_mpi.c 2015-06-23 08:54:01 -05:00
Allen Byrne
86d1946424 [svn-r27267] Combine float checks and int checks to eliminate possible conflicts 2015-06-22 13:49:46 -05:00
HDF Tester
53930f6671 [svn-r27262] Snapshot version 1.9 release 222 2015-06-21 19:16:13 -05:00
Allen Byrne
48e1bbb0f8 [svn-r27252] Fix whitespace 2015-06-19 10:57:38 -05:00
Mohamad Chaarawi
c614e178e3 [svn-r27243] fix problem with encoding/decoding external fapl for lapls. 2015-06-18 15:36:19 -05:00
Allen Byrne
cf7c5123cb [svn-r27238] Add function prototype for local function 2015-06-18 08:52:35 -05:00
Quincey Koziol
f30ab55f41 [svn-r27237] Description:
Merge v3 metadata cache changes to trunk.  Yay! :-)

Tested on:
    MacOSX/64 10.10.3 (amazon) w/serial & parallel
    Linux/32 2.6.x (jam) w/serial & parallel
    (daily tested on branch)
2015-06-17 19:58:49 -05:00
Barbara Jones
6e9e9e0dd2 [svn-r27216] The comments in this example were incorrect regarding the resulting
dataset. They were updated to match the output of the file. (HDFFV-637)
2015-06-16 13:32:04 -05:00
Mohamad Chaarawi
afb85e30e5 [svn-r27207] use "closing" flag instead of always TRUE in the truncate call. 2015-06-15 14:29:30 -05:00
Mohamad Chaarawi
f34bdad87c [svn-r27206] fix for HDFFV-9418.
- Moving truncate to H5F_flush() where it was done a long time ago. 
 - Add a second H5AC_flush() call after the truncate is done to make sure we write the correct EOA.

tested with h5committest
2015-06-15 13:35:00 -05:00
Quincey Koziol
adbb64c6cd [svn-r27204] Description:
Clean up compiler warnings before merging in v3 metadata cache changes
from branch.

Tested on:
    MacOSX/64 10.10.3 (amazon) w/serial & parallel
    Linux/32 2.6.x (jam) w/serial & parallel
2015-06-15 11:07:38 -05:00
Allen Byrne
b5a6740703 [svn-r27202] Except one file is used by other tests! 2015-06-15 08:10:14 -05:00
Allen Byrne
83208611cb [svn-r27201] Changed location of packed bits testfiles 2015-06-15 07:59:14 -05:00
Quincey Koziol
65e76690fd [svn-r27199] Description:
Large code cleanups and optimizations, in preparation for the upcoming
v3 metadata cache merge.

Tested on:
    MacOSX/64 10.10.3 (amazon) w/serial & parallel
    Linux/32 2.6.x (jam) w/serial & parallel
2015-06-12 22:40:33 -05:00
Vailin Choi
e29904660a [svn-r27198] Set "entire_chunk" to false in H5D__chunk_write() for point selection as duplicate points are not checked to determine
that it is really an "entire chunk".  The bug appears from running the mdset.c test. This is a short-term fix for the problem.
2015-06-12 17:55:18 -05:00
Allen Byrne
d92c74b4aa [svn-r27196] Move pbbits file to subfolder 2015-06-12 16:33:27 -05:00
Mohamad Chaarawi
b9f2a18b5a [svn-r27185] fix more instances where both mpi is_initialized and is_finalized need to be checked before making any MPI calls.
tested with h5committest.
2015-06-10 12:57:32 -05:00
Allen Byrne
0f4e97907c [svn-r27172] Change disable to skip big test on cygwin 2015-06-09 13:52:43 -05:00
Allen Byrne
84311eb701 [svn-r27171] Disable big test on cygwin 2015-06-09 13:48:03 -05:00
Mohamad Chaarawi
bf3b382df7 [svn-r27163] update manifest for newly added file. 2015-06-08 16:10:14 -05:00
Mohamad Chaarawi
929e8ce128 [svn-r27162] fix for HDFFV-9412:
- Check for mpi is_initialized and is_finalized before making MPI calls in init/terminate of HDF5.
- Add a test to make sure we can make serial HDF5 calls from rank 0 after MPI_Finalize is called.

tested with h5committest
2015-06-08 15:52:48 -05:00
HDF Tester
02e9a43900 [svn-r27159] Snapshot version 1.9 release 221 2015-06-07 19:01:32 -05:00
Mohamad Chaarawi
4a2bee5cd8 [svn-r27158] missed rename if UNUSED to H5_ATTR_UNUSED in trace script. 2015-06-07 18:03:42 -05:00
Quincey Koziol
235b3b86c1 [svn-r27144] Description:
Normalize trunk against the metadata_cache_merge branch, in preparation
for merging the branch into the trunk.

Tested on:
    MacOSX/64 10.10.3 (amazon) w/serial & parallel
    Linux/64 2.6.x (koala) w/serial
    Linux/32 2.6.x (jam) w/serial & parallel
2015-06-03 10:35:28 -05:00
Allen Byrne
e2fa1a7555 [svn-r27142] Add optional variable for version extension 2015-06-03 09:32:56 -05:00
Mohamad Chaarawi
fc45d5fcb0 [svn-r27133] - Add a new attribute function characterstic for format:
* H5_ATTR_FORMAT(X,Y,Z)  __attribute__((format(X, Y, Z)))
- Rename UNUSED attribute characterstic to H5_ATTR_UNUSED.
- Rename NORETURN attribute characterstic to H5_ATTR_NORETURN

tested with h5committest.
2015-06-01 14:38:09 -05:00