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Author SHA1 Message Date
Binh-Minh Ribler
4a4ec03dfd Adding a C++ wrapper 
Description:
    - Added a wrapper for H5Ovisit2 to class H5Object
        // Recursively visit elements reachable from this object.
        void visit(H5_index_t idx_type, H5_iter_order_t order,
                   visit_operator_t user_op, void *op_data, unsigned int fields);
    - Fixed various typos in documentation
Platforms tested:
    Linux/64 (jelly)
    Linux/64 (platypus)
    Darwin (osx1011test)
 2019-02-14 15:35:04 -06:00
Quincey Koziol
10cdff5ca4 Merge pull request #1540 in HDFFV/hdf5 from merge_hyperslab_changes_01 to develop 
* commit 'fb5d1a37c11bca613175a48262a2147e99c9dede':
  Align develop with incoming hyperslab_updates branch changes.
 2019-02-13 18:13:18 -06:00
Allen Byrne
40589e28d8 Merge pull request #1542 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop 
* commit 'b95f05638ce40ccd944248f5865a248f39ef0d10':
  TRILAB-111 fixes for parallel testing
 2019-02-13 17:05:25 -06:00
Allen Byrne
b95f05638c TRILAB-111 fixes for parallel testing 2019-02-13 15:53:59 -06:00
Quincey Koziol
fb5d1a37c1 Merge remote-tracking branch 'origin/develop' into merge_hyperslab_changes_01 2019-02-13 10:27:33 -06:00
Larry Knox
50b85e0330 Merge pull request #1539 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop 
* commit '3ed1ac0f1b760fe84ec009de19550d98f0b38071':
  Add missing toolchain include for cross-compile
  KNL option for batch scripts
 2019-02-13 09:31:53 -06:00
Allen Byrne
3ed1ac0f1b Add missing toolchain include for cross-compile 2019-02-13 08:24:27 -06:00
Quincey Koziol
b5305b25a6 Align develop with incoming hyperslab_updates branch changes. 2019-02-12 21:51:15 -06:00
Allen Byrne
8c22f41801 KNL option for batch scripts 2019-02-12 15:51:42 -06:00
Jordan Henderson
112b813196 Merge pull request #1534 in HDFFV/hdf5 from ~JHENDERSON/hdf5:develop to develop 
* commit '3acd486b83f319579b1c6884c90289b0eb1d44a6':
  Fixes for JNI updates
 2019-02-12 13:42:15 -06:00
Jordan Henderson
3acd486b83 Fixes for JNI updates 2019-02-12 11:56:42 -06:00
Jordan Henderson
8f42566f7a Merge pull request #1523 in HDFFV/hdf5 from ~JHENDERSON/hdf5:develop to develop 
* commit '8f447bd3564a88738b9a26b1b0ac3bba785efd39':
  Add RELEASE.txt note for collective metadata read fixes
  Fix some collective metadata read issues
 2019-02-11 22:24:06 -06:00
Jordan Henderson
8f447bd356 Add RELEASE.txt note for collective metadata read fixes 2019-02-11 19:15:56 -06:00
Jordan Henderson
34508f0620 Merge in latest from develop 2019-02-11 19:13:39 -06:00
Jordan Henderson
65a820ae89 Fix some collective metadata read issues 2019-02-11 18:31:23 -06:00
Allen Byrne
fa83ab9f7c Merge pull request #1533 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop 
* commit '6f71b2cdcf3326b1d7bc67cf664b56d2f4056bfd':
  Refactor mpi test names
 2019-02-11 12:47:02 -06:00
Allen Byrne
6f71b2cdcf Refactor mpi test names 2019-02-11 12:42:46 -06:00
Larry Knox
e2b6e72e7c Merge pull request #1530 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop 
* commit 'edcbc9966f5c742970ad32eb50a7925fcf7ab677':
  Refactor parallel test names
  Rename parallel tests to start with PAR_
  Distinguish parallel performance tests
  Set the full generator name
  Add new cmake copy file tests to ignore
  Use correct values for other file versions
  CMake script changes to simplify execution
 2019-02-11 12:05:24 -06:00
Allen Byrne
edcbc9966f Refactor parallel test names 2019-02-11 12:01:25 -06:00
Allen Byrne
f8d5add80b Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop) 
* commit 'a3a90e79afda2351f16181ec3592b96caceffbe1':
  Re-write of Java JNI error handling
 2019-02-11 11:11:05 -06:00
Allen Byrne
d98faf5703 Rename parallel tests to start with PAR_ 2019-02-11 11:09:43 -06:00
Allen Byrne
a3a90e79af Merge pull request #1532 in HDFFV/hdf5 from ~JHENDERSON/hdf5_merge:develop to develop 
* commit 'cc6a61215e508d047ed6aa2daf67475cfe34ee4d':
  Re-write of Java JNI error handling
 2019-02-11 11:07:01 -06:00
Jordan Henderson
cc6a61215e Re-write of Java JNI error handling 2019-02-11 10:58:58 -06:00
Allen Byrne
f7bab665bb Distinguish parallel performance tests 2019-02-11 10:53:13 -06:00
Allen Byrne
691b92ff9c Set the full generator name 2019-02-11 10:09:32 -06:00
Allen Byrne
742894ce88 Add new cmake copy file tests to ignore 2019-02-11 08:56:14 -06:00
Allen Byrne
648a21473f Use correct values for other file versions 2019-02-08 21:38:39 -06:00
Allen Byrne
d0be2f5840 CMake script changes to simplify execution 2019-02-08 10:48:49 -06:00
Quincey Koziol
4300ca6234 Merge pull request #1528 in HDFFV/hdf5 from add_id_type_to_vol_wrap_cb to develop 
* commit '163dcebec5d853b720dcb64b5e9828670b963773':
  Add ID type (of eventual hid_t) to the VOL "wrap" callback.
 2019-02-07 16:20:26 -06:00
Jordan Henderson
0d1d61951f Merge pull request #1527 in HDFFV/hdf5 from ~JHENDERSON/hdf5_merge:develop to develop 
* commit '28b9af4f28df6c0e4f7fbf1ce4a0f50e1797b4d3':
  Fix test issue in testpar/t_dset.c with MPI-2 implementations
 2019-02-07 15:11:58 -06:00
Jordan Henderson
28b9af4f28 Fix test issue in testpar/t_dset.c with MPI-2 implementations 2019-02-07 14:31:32 -06:00
Quincey Koziol
163dcebec5 Add ID type (of eventual hid_t) to the VOL "wrap" callback. 2019-02-07 14:31:26 -06:00
Allen Byrne
865e35ea01 Merge pull request #1524 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop 
* commit '36e3d1600a3f9d771cfb9b4475f23c57d4b10280':
  Refactor out timeout values
  Correct name of variable
  Remove F2003 Option and references
  Remove obsolete file
  Update examples version
  Update to example reference version
  Switch OFF if compression source is not available
  Fail configure if SZIP/ZLIB is requested but not found
 2019-02-07 12:07:26 -06:00
Allen Byrne
36e3d1600a Refactor out timeout values 2019-02-06 16:41:58 -06:00
Allen Byrne
5ba4266a04 Correct name of variable 2019-02-06 11:02:16 -06:00
Vailin Choi
c7977ec2f8 Merge pull request #1522 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to develop 
* commit '7f5741825db0737db5ac46c43009681508a73002':
  Add release notes information.
  Modification based on feedback from pull request.
  Modification based on feedback from pull request.
  There is performance issue when closing an object.  The slow down is due to the search of the "tag_list" to find out the "corked" status of an object. The fix: (1)  Add a counter "num_objs_corked" in the cache structure to track the number of "corked" objects. (2) Skip the search of "tag_list" if the counter is zero i.e. no "corked" objects.
 2019-02-06 10:49:51 -06:00
Vailin Choi
7f5741825d Add release notes information. 2019-02-06 10:48:30 -06:00
Allen Byrne
e73197077b Remove F2003 Option and references 2019-02-06 10:10:46 -06:00
Allen Byrne
3ebfd7edd4 Remove obsolete file 2019-02-06 08:45:59 -06:00
Allen Byrne
a476f5348e Update examples version 2019-02-06 08:38:55 -06:00
Allen Byrne
ee9771425f Update to example reference version 2019-02-06 08:37:11 -06:00
Vailin Choi
7d124cb796 Modification based on feedback from pull request. 2019-02-05 18:13:11 -06:00
Vailin Choi
e272e64e74 Modification based on feedback from pull request. 2019-02-05 17:04:04 -06:00
Allen Byrne
abd74c8310 Switch OFF if compression source is not available 2019-02-05 15:44:38 -06:00
Allen Byrne
18e875f75f Fail configure if SZIP/ZLIB is requested but not found 2019-02-05 15:25:30 -06:00
Vailin Choi
34f028070e Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~vchoi/my_hdf5_fork into develop 2019-02-04 22:51:57 -06:00
Vailin Choi
7f718e9ea2 There is performance issue when closing an object. The slow down is due to the search of 
the "tag_list" to find out the "corked" status of an object.
The fix:
(1)  Add a counter "num_objs_corked" in the cache structure to track the number
of "corked" objects.
(2) Skip the search of "tag_list" if the counter is zero i.e. no "corked" objects.
 2019-02-04 22:30:48 -06:00
Dana Robinson
c7d04ee3af Merge pull request #1520 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:cmake_tweaks to develop 
* commit '91c7ff81dcac1af7a7b609698aa69f0c213a6184':
  Added a line for the CMake pread/write option to INSTALL_CMake.txt.
 2019-02-04 12:43:25 -06:00
Dana Robinson
91c7ff81dc Added a line for the CMake pread/write option to INSTALL_CMake.txt. 2019-02-04 10:11:59 -08:00
Larry Knox
08001e2f3f Merge pull request #1518 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop 
* commit '6c2a4b728f3c8eadb18d4e10d41bdbd7d1c8f3e8':
  Add LOCAL_BATCH_SCRIPT_ARG variable for submitting account information and other batch command variations with ctest command.
  Add batchscript options that work when running ctest directly.
 2019-02-04 08:48:55 -06:00