1751 Commits

Author SHA1 Message Date
Quincey Koziol
2c93a80648 [svn-r14160] Description:
Make H5Topen versioned, and add regression test for H5Topen1.

Tested on:
        FreeBSD/32 6.2 (duty) in debug mode
        FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
                                in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        AIX/32 5.3 (copper) w/FORTRAN, w/parallel, in production mode
        Mac OS X/32 10.4.10 (amazon) in debug mode
2007-09-27 15:28:27 -05:00
Quincey Koziol
8b5643ac36 [svn-r14157] Description:
Add regression test for deprecated routine: H5Tcommit1().

Tested on:
        FreeBSD/32 6.2 (duty) in debug mode
        FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
                                in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        AIX/32 5.3 (copper) w/FORTRAN, w/parallel, in production mode
        Mac OS X/32 10.4.10 (amazon) in debug mode
2007-09-27 07:11:59 -05:00
Quincey Koziol
3706d53f15 [svn-r14156] Description:
Add API versioning to H5Tcommit()

Tested on:
        FreeBSD/32 6.2 (duty) in debug mode
        FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
                                in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        AIX/32 5.3 (copper) w/FORTRAN, w/parallel, in production mode
        Mac OS X/32 10.4.10 (amazon) in debug mode
2007-09-25 21:50:31 -05:00
Quincey Koziol
68c01f91d9 [svn-r14154] Description:
Finish deprecating last H5G symbol (H5G_obj_t) - yay!

	Lots of misc. library fixes to remove confusion between links and
objects.  The tools could still use another pass, to remove h5trav_type_t type
and make the correct distinction between links & objects.

Tested on:
        FreeBSD/32 6.2 (duty) in debug mode
        FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
                                in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        AIX/32 5.3 (copper) w/FORTRAN, w/parallel, in production mode
        Mac OS X/32 10.4.10 (amazon) in debug mode
2007-09-25 17:18:33 -05:00
Quincey Koziol
02296972ec [svn-r14153] Description:
Add regression test for H5Rget_obj_type1()

Tested on:
	FreeBSD/32 6.2 (duty)
	FreeBSD/64 6.2 (liberty)
	Linux/32 2.6 (kagiso)
	Linux/64 2.6 (smirom)
	Solaris/32 2.10 (linew)
	AIX/32 5.3 (copper)
	Mac OS X/32 10.4.10 (amazon)
2007-09-25 08:31:31 -05:00
Pedro Vicente Nunes
2a693df239 [svn-r14150]
bug fix: a CHECK macro had a wrong function name (H5Pget_link_creation_order)  in the description

tested: linux
2007-09-18 16:00:04 -05:00
Quincey Koziol
94153c6c3d [svn-r14148] Description:
Add H5Rget_obj_type() to the API versioning and switch internal
routines to use H5Rget_obj_type2()

	Misc. other code cleanups, etc.

Tested on:
        FreeBSD/32 6.2 (duty)
        FreeBSD/64 6.2 (liberty)
        Linux/32 2.6 (kagiso)
        Linux/64 2.6 (smirom)
        AIX/32 5.3 (copper)
        Solaris/32 2.10 (linew)
        Mac OS X/32 10.4.10 (amazon)
2007-09-13 20:52:38 -05:00
Quincey Koziol
27a1a10fbb [svn-r14146] Description:
Move H5Gget_objtype_by_idx() to deprecated symbols section, replacing
with H5Oget_info_by_idx()

Tested on:
        FreeBSD/32 6.2 (duty)
        FreeBSD/64 6.2 (liberty)
        Linux/32 2.6 (kagiso)
        Linux/64 2.6 (smirom)
        AIX/32 5.3 (copper)
        Solaris/32 2.10 (linew)
        Mac OS X/32 10.4.10 (amazon)
2007-09-13 13:26:12 -05:00
Quincey Koziol
095762a736 [svn-r14145] Description:
Move H5Gget_objname_by_idx() to deprecated symbols section.  Replace
internal usage with H5Lget_name_by_idx().

Tested on:
        FreeBSD/32 6.2 (duty)
        FreeBSD/64 6.2 (liberty)
        Linux/32 2.6 (kagiso)
        Linux/64 2.6 (smirom)
        AIX/32 5.3 (copper)
        Solaris/32 2.10 (linew)
        Mac OS X/32 10.4.10 (amazon)
2007-09-13 12:04:36 -05:00
Quincey Koziol
579284f422 [svn-r14144] Description:
Move H5Gget_objinfo() to deprecated symbols section and retarget
internal usage to H5Lget_info()/H5Oget_info().

	Misc. other code cleanups...

Tested on:
	FreeBSD/32 6.2 (duty)
	FreeBSD/64 6.2 (liberty)
	Linux/32 2.6 (kagiso)
	Linux/64 2.6 (smirom)
	AIX/32 5.3 (copper)
	Solaris/32 2.10 (linew)
	Mac OS X/32 10.4.10 (amazon)
2007-09-13 10:44:56 -05:00
Quincey Koziol
3bed870363 [svn-r14136] Description:
Move H5Gget_num_objs() and several minor macros, etc. to deprecated
symbols section, replacing it with H5Gget_info().

Tested on:
	FreeBSD/32 6.2 (duty)
	FreeBSD/64 6.2 (liberty)
	Linux/32 2.6 (kagiso)
	Linux/64 2.6 (smirom)
	AIX/32 5.3 (copper)
	Solaris/32 5.10 (linew)
	Mac OS X/32 10.4.10 (amazon)
2007-09-06 10:54:22 -05:00
Quincey Koziol
3eb8c81b80 [svn-r14134] Description:
Cast usage of hsize_t variable as array index into size_t.

Tested on:
	Linux/32 2.6 (kagiso) w/PGU compilers
2007-08-31 14:55:43 -05:00
Quincey Koziol
a4069db8f4 [svn-r14131] Description:
Move H5Giterate() and H5G_iterate_t to deprecated symbols section,
replacing them with H5Literate and H5L_iterate_t respectively.

Tested on:
	FreeBSD/32 6.2 (duty)
	FreeBSD/64 6.2 (liberty)
	Linux/32 2.6 (kagiso)
	Linux/64 2.6 (smirom)
	AIX/32 5.3 (copper)
	Solaris/32 5.10 (linew)
	Mac OS X/32 10.4.10 (amazon)
2007-08-30 15:03:37 -05:00
Quincey Koziol
c50c23d387 [svn-r14129] Description:
Add H5O{set|get}_comment routines, which were overlooked before.

	Move H5G{set|get}_comment routines to deprecated code section,
replacing internal calls with H5O{set|get}_comment.

Tested on:
	FreeBSD/32 6.2 (duty)
	FreeBSD/64 6.2 (liberty)
	Linux/32 2.6 (kagiso)
	Linux/64 2.6 (smirom)
	Solaris/32 5.10 (linew)
	AIX/32 5.3 (copper)
	Mac OS X/32 10.4.10 (amazon)
2007-08-30 08:55:10 -05:00
Quincey Koziol
71d6bffdd7 [svn-r14127] Description:
Move H5Gget_linkval to deprecated symbol section and replace with
H5Lget_val for internal calls.

Tested on:
	FreeBSD/32 6.2 (duty)
	FreeBSD/64 6.2 (liberty)
	Linux/32 2.6 (kagiso)
	Linux/64 2.6 (smirom)
	Solaris/32 5.10 (linew)
	Mac OS X/32 10.4.10 (amazon)
2007-08-29 18:37:41 -05:00
Quincey Koziol
db3c155bf2 [svn-r14126] Description:
Move H5Gunlink to deprecated symbol section, replacing internal calls
with H5Ldelete.

Tested on:
	FreeBSD/32 6.2 (duty)
	FreeBSD/64 6.2 (liberty)
	Linux/32 2.6 (kagiso)
	Linux/64 2.6 (smirom)
	Solaris/32 5.10 (linew)
	Mac OS X/32 10.4.10 (amazon)
2007-08-29 15:44:19 -05:00
Quincey Koziol
bc07e61d29 [svn-r14123] Description:
Move H5Gmove2() to deprecated code section, replacing it with H5Lmove()
in the source code.

Tested on:
	FreeBSD/32 6.2 (duty)
	FreeBSD/64 6.2 (liberty)
	Linux/32 2.6 (kagiso)
	Linux/64 2.6 (smirom)
	Solaris/32 5.10 (linew)
	Mac OS X/32 10.4.10 (amazon)
2007-08-28 17:45:23 -05:00
Quincey Koziol
cae55b647d [svn-r14122] Description:
Move H5Gmove() to deprecated code section, replacing with H5Lmove()
in source files.

Tested on:
	FreeBSD/32 6.2 (duty)
	FreeBSD/64 6.2 (liberty)
	Linux/32 2.6 (kagiso)
	Linux/64 2.6 (smirom)
	Solaris/32 5.10 (linew)
	Mac OS X/32 10.4.10 (amazon)
2007-08-28 17:30:13 -05:00
Quincey Koziol
518e0ede77 [svn-r14121] Description:
Correct a couple of swapped parameters for creating soft links.

Tested on:
	FreeBSD/64 6.2 (liberty)
2007-08-28 16:49:12 -05:00
Quincey Koziol
74ceb182bd [svn-r14120] Description:
Move H5Glink2 to deprecated routines section.

Tested on:
	FreeBSD/32 6.2 (duty)
	FreeBSD/64 6.2 (liberty)
	Linux/32 2.6 (kagiso)
	Linux/64 2.6 (smirom)
	Solaris/32 5.10 (linew)
	Mac OS X/32 10.4.10 (amazon)
2007-08-28 16:31:57 -05:00
Quincey Koziol
d329016e66 [svn-r14118] Description:
Fix inverted link parameters in setup() routine.

Tested on:
	FreeBSD/32 6.2 (duty)
	FreeBSD/64 6.2 (liberty)
	Solaris/32 5.10 (linew)
2007-08-28 14:53:40 -05:00
Quincey Koziol
a84811bfb8 [svn-r14117] Description:
Move H5Glink() into "deprecated routines" section, replacing internal
usage with H5Lcreate_hard/H5Lcreate_soft.

Tested on:
	FreeBSD/32 6.2 (duty)
	FreeBSD/64 6.2 (liberty)
	Solaris/32 5.10 (linew)
2007-08-28 14:47:00 -05:00
Quincey Koziol
ea343ef854 [svn-r14115] Description:
Remove all plain calls to H5Gopen() from source, replacing them with
either H5Gopen2().

	Add test for H5Gopen1().

	Reformatted several pieces of code, to clean them up.

Tested on:
	FreeBSD/32 6.2 (duty)
	FreeBSD/64 6.2 (liberty)
	Linux/32 2.6 (kagiso)
	Linux/64 2.6 (smirom)
	Solaris/32 5.10 (linew)
	Mac OS X/32 10.4.10 (amazon)
2007-08-28 10:02:54 -05:00
Quincey Koziol
f3926484ce [svn-r14112] Description:
Avoid file size queries/comparisons when using core VFD.

Tested on:
	FreeBSD/32 6.2 (duty) w/core VFD
2007-08-24 13:41:29 -05:00
Quincey Koziol
63eb5b9ebb [svn-r14104] Description:
Pursue calls to H5Gcreate() relentlessly and ruthlessly exterminate
them, leaving only a few tame specimens in text files and comments.  ;-)

Tested on:
	Mac OS X/32 10.4.10 (amazon)
	FreeBSD/32 6.2 (duty)
	FreeBSD/64 6.2 (liberty)
	Linux/32 2.6 (kagiso)
	Linux/64 2.6 (smirom)
	Solaris/32 5.10 (linew)
2007-08-23 15:25:25 -05:00
Quincey Koziol
f7db09fb3d [svn-r14101] Description:
Change definition of H5E_walk1_t compatibility type to match the H5E_walk_t
type in the 1.6.x library.

Tested on:
    Mac OS X/32 10.4.10 (amazon)
    Too minor to require commit test
2007-08-23 07:54:50 -05:00
Quincey Koziol
cdd4606430 [svn-r14097] Description:
First real use of API versioning code, H5E routines switched to use
new API versioning scheme.

Tested on:
	Mac OS X/32 10.4.10 (amazon)
	FreeBSD/32 6.2 (duty)
	FreeBSD/64 6.2 (liberty)
	Linux/32 2.6 (kagiso)
	Linux/64 2.6 (smirom)
	Solaris/32 5.10 (linew)
2007-08-21 16:08:27 -05:00
Quincey Koziol
665366d499 [svn-r14085] Description:
Refactor H5HF_size() size statistics code for fractal heap to conform to
how the rest of the fractal heap routines work.

Tested on:
    FreeBSD/32 6.2 (duty)
    Mac OS X/32 10.4.10 (amazon)
2007-08-14 11:04:42 -05:00
Quincey Koziol
4dc989f282 [svn-r14083] Description:
Correct problem with fractal heap's free space size usage gathering
routine, which was "poisoning the cache" by loading an incorrectly initialized
piece of metadata from the file.

Tested on:
    FreeBSD/32 6.2 (duty)
    Mac OS X/32 6.2 (amazon)
2007-08-14 08:33:14 -05:00
Quincey Koziol
abd36a6f6e [svn-r14082] Description:
Fix bug with moving object header messages forward into null messages
of exactly the same size and located in an object header chunk with a gap.
(Exposed by netCDF-4 test)

Tested on:
	FreeBSD/32 6.2 (duty)
2007-08-13 23:56:54 -05:00
John Mainzer
b742150e4c [svn-r14064] Implemented function allowing the user to cork the metadata cache.
Also implemented associated test code.
2007-08-09 23:19:43 -05:00
Quincey Koziol
6f3fe31a4c [svn-r14020] Description:
Correct error in size of v2 B-tree metadata prefix, which could cause too
many entries to get inserted into a node, eventually causing either a file
corruption bug (if debugging asserts were off) or a core dump on the assertion
which checked this.

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2007-07-26 14:12:22 -05:00
Quincey Koziol
c5b28bc035 [svn-r14008] Description:
Minor comment & testing cleanups

Tested on:
	FreeBSD/32 6.2 (duty)
	FreeBSD/64 6.2 (liberty)
	Linux/32 2.6 (kagiso)
	Mac OS X/32 10.4.10 (amazon)
	Solaris/32 2.10 (linew)
2007-07-24 16:30:34 -05:00
Quincey Koziol
492e5ca2b4 [svn-r14004] Description:
Fix problem with datatype messages where the version of the format
for a datatype message could depend on the "use the latest format" flag from
the file after it was initially created.

Tested on:
	FreeBSD/32 6.2 (duty)
	FreeBSD/64 6.2 (liberty)
	Linux/32 2.6 (kagiso)
	Mac OS X/32 10.4.10 (amazon)
2007-07-24 14:10:00 -05:00
Quincey Koziol
05973a4e86 [svn-r14003] Description:
Code cleanup & whitespace fixups

Tested on:
	FreeBSD/32 6.2 (duty)
	FreeBSD/64 6.2 (liberty)
	Linux/32 2.6 (kagiso)
	Mac OS X/32 10.4.10 (amazon)
2007-07-24 14:07:43 -05:00
Raymond Lu
7f2a3a97c3 [svn-r13997] Moved H5D_istore_lock and H5D_istore_unlock from H5D_istore_writevv and H5D_istore_readvv to
H5D_chunk_write and H5D_chunk_read to avoid frequent lock and unlock and to improve some
performance.

Tested with h5committest on THG machines.
2007-07-21 14:50:43 -05:00
Quincey Koziol
774ee2fbf0 [svn-r13996] Description:
Add missing "PASSED" message for successful test.

Tested on:
	FreeBSD/32 6.2 (duty)
2007-07-21 11:43:52 -05:00
Quincey Koziol
725d33c5ff [svn-r13995] Description:
Reduce the dataset dimensions for the "check extend" test, so it
doesn't take so long...

Tested on:
	FreeBSD/32 6.2 (duty) w/check-vfd
2007-07-21 01:00:44 -05:00
Quincey Koziol
0061212eca [svn-r13994] Description:
Add a bit more information to the log VFD settings.

Tested on:
	FreeBSD/32 6.2 (duty) w/check-vfd
2007-07-21 00:59:55 -05:00
Quincey Koziol
69c572e26a [svn-r13990] Description:
Allow a ".h5" suffix to be added to core files also, which prevents
overwriting the test binary (and confusing the tests on copper, etc.)

Tested on:
	AIX 5.3 (copper) w/check-vfd
	FreeBSD/32 6.2 (duty)
	FreeBSD/64 6.2 (liberty)
2007-07-20 12:05:00 -05:00
Quincey Koziol
c55d0f4e1e [svn-r13988] Description:
Fix bug where the version of an attribute would change after it was
created, causing the amount of space used to encode it to change.

Tested on:
	Mac OS X/32 10.4.10 (amazon)
	FreeBSD/32 6.2 (duty)
2007-07-17 21:08:37 -05:00
Quincey Koziol
2ed54543c8 [svn-r13987] Description:
Fix ohdr test for changes to internal 5O_get_info() routine.

Tested on:
	Mac OS X/32 10.4.10 (amazon)
	FreeBSD/32 6.2 (duty)
2007-07-17 16:17:12 -05:00
Quincey Koziol
b566d21649 [svn-r13972] Description:
Add --with-default-api-version configure flag.

Tested on:
	Mac OS X/32 10.4.10 (amazon)
	FreeBSD/32 6.2 (duty)
	Linux/32 2.6 (kagiso)
2007-07-12 21:42:17 -05:00
Quincey Koziol
b4e029c70b [svn-r13971] Description:
Add --enable-deprecated-symbols configure option, to allow users to
remove deprecated public API symbols at configure time.

	Add bin/make_vers script to bin/reconfigure actions.

	Run bin/reconfigure to regenerate autotool components.

Tested on:
	Mac OS X/32 10.4.10 (amazon)
	FreeBSD/32 6.2 (duty)
	Linux/32 2.6 (kagiso)
2007-07-12 17:01:35 -05:00
Quincey Koziol
6930f2e32d [svn-r13945] Description:
Modify semantics for constant messages slightly, to allow them to be
deleted, but not modified.  This works around the issue where "old" style
groups are being created with the symbol table message marked constant in
the 1.6 (and prior) branch, but the 1.8 branch needs to remove the symbol table
message when the group has been changed to the "new" style (upon insertion
of a link that the "old" style can't handle).

Tested on:
    Mac OS X/32 10.4.10 (amazon)
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2007-07-05 15:01:42 -05:00
Quincey Koziol
b37dc18282 [svn-r13944] Description:
Fix problem with VL-datatype fill values when shrinking dataset's dimensions

Tested on:
    Mac OS X/32 10.4.10 (amazon)
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2007-07-05 10:45:45 -05:00
Albert Cheng
4040ae4232 [svn-r13941] Added feature to test the latest format by adding "latest" as the
HDF5_DRIVER value to activate the use of latest_format for file access
property list.

Platform tested: h5committested.
2007-07-05 02:38:38 -05:00
Quincey Koziol
dbe1a47e93 [svn-r13938] Description:
"Genericize" the datatypes for fill value testing when extending a dataset.

Tested on:
    Mac OS X/32 10.4.10 (amazon)
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2007-07-03 15:20:34 -05:00
Quincey Koziol
2bc42b17fb [svn-r13937] Description:
A few more cleanups for testing [atomic] fill values and extending datasets

Tested on:
    Mac OS X/32 10.4.10 (amazon)
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2007-07-03 14:20:02 -05:00
Quincey Koziol
4af566ef23 [svn-r13936] Description:
Extract main test for extending a dataset into separate routine, to
facilitate testing different parameters.

Tested on:
    Mac OS X/32 10.4.10 (amazon)
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2007-07-03 13:50:24 -05:00