A 'static' keyword was removed from an array that needs it on Windows
during a warning removal overhaul. Replacing it fixes the error.
Tested on: 64-bit Windows 7 w/ VS 2015
Prevents the test from segfaulting in other sub-tests
when a previous test fails.
Tested on: 64-bit Ubuntu Linux 16.04 LTS w/ gcc 5.4.0
Autotools serial + direct VFD (vfd test only)
Also tested with a forced error to ensure
that the test no longer segfaults and
confirmed that all test files are cleaned up.
More warning cleanups, bringing the build down to 25 unique types of
warnings, with 550 warnings in 122 files (down from 28, 770, and 134).
Tested on:
MacOSX/64 10.11.5 (amazon) w/serial & parallel
(h5committest forthcoming)
Checked the return value of a read() call to clean up a warning.
Tested on: 64-bit Ubuntu Linux 16.04 LTS w/ gcc 5.4.0
Autotools serial, file_image test only
More warning cleaups: down to 770 warnings (from ~940) in 134 files (from
148), with 28 unique kinds of warnings (from 31).
Tested on:
MacOSX/64 10.11.5 (amazon) w/serial & parallel
(h5committest forthcoming)
Switch test framework to dynamically allocate the testing array, and
expand the length of the description field.
Tested on:
MacOSX/64 10.11.5 (amazon) w/serial & parallel
(h5committest forthcoming)
Clean up more warnings: drop the warning count from ~1310 down to ~940,
with only 31 types of warnings in 148 files (down from 38 types in 167 files).
Tested on:
MacOSX/64 10.11.5 (amazon) w/serial & parallel
(h5committest forthcoming)
Since it only tests the core VFD, there's no need to get a
VFD-dependent fapl.
Tested on:
64-bit Ubuntu Linux w/ gcc 5.3.1
vfd test w/ all VFDs tested by make check-vfd
More warning cleanups. This brings us down to ~1300 warnings in 167 files
Tested on:
MacOSX/64 10.11.5 (amazon) w/serial & parallel
(h5committest forthcoming)
Clean up warnings (from 2774 -> 1560, with my standard debug build)
Tested on:
MacOSX/64 10.11.5 (amazon) w/serial, parallel & production
(h5committest forthcoming)
Move updated flush dependency code in metadata cache from revise_chunks
branch to trunk. Also many of the cleanups from r30111 in the revise_chunks
branch.
Tested on:
MacOSX/64 10.11.5 (amazon) w/serial, parallel & production
(h5committest forthcoming)
The features is controlled via H5Pset/get_evict_on_close()
and is currently enabled by default (it will be disabled
by default in the final implementation).
There is a bug in the code where the eviction of tagged
metadata fails due to some of the metadata being dirty,
resulting in error return values and test failures.
Bring object/dataset/group/named datatype features from revise_chunks
branch to trunk. Also CMake support for h5format_convert and a bunch of
misc. cleanups.
Tested on:
MacOSX/64 10.11.5 (amazon) w/serial, parallel & production
(h5committest forthcoming)
Bring r29992 from revise_chunks branch to trunk:
Turn off error reporting for h5debug and hdf2gif.
Tested on:
MacOSX/64 10.11.5 (amazon) w/serial, parallel & produciton
(h5committest forthcoming)
Bring r29914 from revise_chunks branch to trunk:
Banished -Wformat= warnings from the library, tools, and tests.
Tested on:
MacOSX/64 10.11.5 (amazon) w/serial, parallel & production
(h5committest forthcoming)
Bring r29909 from revise_chunks to trunk:
Cleaned up "conflicts with C++ keyword" warnings.
Tested on:
MacOSX/64 10.11.5 (amazon) w/serial, parallel & production
(h5committest forthcoming)
- Cleaned up mixed tabs and spaces that mis-aligned brackets.
- Test functions now return hbool_t to match the global pass variable.
- Main now returns EXIT_SUCCESS/EXIT_FAILURE.
- The invalid_configs array is now allocated dynamically instead
of statically. This reduces the frame size, removing some
warnings and making it easier for platforms/compilers that
have frame size issues (e.g.: zOS).
Tested on: 64-bit Ubuntu Linux w/ gcc 5.3.1
Autotools serial
Minor rearrangements, to align with revise_chunks branch
Tested on:
MacOSX/64 10.11.4 (amazon) w/serial, parallel & production
(h5committest forthcoming)
Bring "file pointer patching" code & test from revise_chunks to trunk.
Tested on:
MacOSX/64 10.11.4 (amazon) w/serial, parallel & production
(h5committest forthcoming)
Bring 'none' chunk index from revise_chunks branch to trunk.
Tested on:
MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (w/check-vfd)
(h5committest forthcoming)
config/linux-gnulibc1 reapply filx for HDFFV-9439 which was partially removed, probably by merge from revise_chunks branch.
Tested with h5committest.new on kituo, ostrich, osx1010dev and platypus.
Close another FAPL in the test_missing_chunk() routine.
Tested on:
MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (w/check-vfd)
(h5committest forthcoming)
Bring "single" chunk index from revise_chunks branch to trunk.
Tested on:
MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (w/check-vfd)
(h5committest forthcoming)
Close FAPL that was leaked in zero_dims test.
Tested on:
MacOSX/64 10.11.4 (amazon) w/serial, parallel & production, including check-vfd
(h5committest forthcoming)
Bring over more dataset tests from the revise_chunks branch.
Tested on:
MacOSX/64 10.11.4 (amazon) w/serial, parallel & production
(h5committest forthcoming)
Correct chunk index computation for earrays and farrays, particularly when
copying datasets with H5Ocopy() and other operations (like H5Dget_storage_size)
that require iterating over all chunks.
Tested on:
MacOSX/64 10.11.4 (amazon) w/serial & parallel
(h5committest forthcoming)
Bring support for earray and v2 B-trees from revise_chunks branch to
trunk.
Tested on:
MacOSX/64 10.11.4 (amazon) w/serial, parallel & production
(h5committest forthcoming)
Minor style cleanups, from revise_chunks branch
Tested on:
MacOSX/64 10.11.4 (amazon) w/serial, parallel and production
(too minor to require h5committest)
Bring updated layout and EFL property comparisons and new "latest format"
flags from revise_chunks branch.
Tested on:
MacOSX/64 10.11.4 (amazon) w/serial, parallel & production
(h5committest forthcoming)
Corrects a problem where H5Dget_access_plist() returns a dapl that
does not contain all dapl fields.
Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1
autotools serial
Svn revisions reverted: 29341, 29326
Branch features/h5check_version was created for further development.
Files changed
test/tcheck_version.c
test/testcheck_version.sh.in
src/H5public.h
src/H5.c
config/lt_vers.am
bin/h5vers
Tested with h5committest.new
bin/h5vers:
Changed to copy the shared lib version from lt_vers.am to H5public.h
(Thanks to Larry who made the changes.)
config/lt_vers.am:
cosmetic change, nothing material.
src/H5public.h:
Changed by bin/h5vers.
src/H5.c:
Changed H5check_version() to use shared library version for compatibility
checking.
test/tcheck_version.c:
test/testcheck_version.sh.in:
Changed to use shared library version numbers instead of the HDF5 library
version numbers for testing.
Tested: tested in Jam (C only), platypus and osx1010dev (enable fortran and C++).
external dataset storage path behavior.
This check-in fixes a bug in the original check-in where the
external path stored in the file struct was not copied on reopen
causing subsequent dataset operations to fail.
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
autotools serial w/ fortran and C++
autotools parallel (MPICH 3.1.4) w/ fortran
replace functions like h5_clean_files() that also do things like
reset the error handler and close fapls.
Existing tests have not yet been updated to use these new
functions.
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
autotools serial
r29069 and 72 (gheap cleanup)
r29041 and 43 (HDFFV-8740 external storage)
These cause problems in the daily tests. They will be
re-introduced when their respective problems have been
addressed.
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
autotools serial (check-vfd) w/ Fortran and C++
autotools parallel w/ Fortran
CMake serial
- Fixed typo in Wsetenv().
- Changed HDoff_t back to off_t in test/external.c. The function signature is off_t so the types must match or you can get conversion errors.
Tested on 64-bit Windows 10 w/ VS 2015
for external dataset files set via H5Pset_external().
Resolves HDFFV-8740
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
autotools serial
This test is duplicated more comprehensively in the links.c file so
there is no need to copy it over.
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
serial autotools
Buffers that will be written to disk will now always be cleared since
not doing this has huge security implications.
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0, x86_64) gcc 5.2.1
serial autotools
parallel autotools (MPICH 3.1.4)
serial CMake
- remove H5AC_ind_dxpl_id and use only H5AC_dxpl_id everywhere instead.
- remove flush_me_collectively flag from cache entries
- add a collective sanity check (MPI_Barrier) for every HDF5 API routine that could possibly touch the file. This is trigerred when the environment variable H5_COLL_API_SANITY_CHECK is set to a non 0 digit.
tested on BB-8 with serial and parallel.
Switch filter plugin to use H5allocate_memory and H5free_memory instead of
malloc and free.
Tested on:
Linux/32 2.6.x (jam) w/serial
Linux/64 2.6.x (jam) w/serial
MacOSX/64 10.11.2 (amazon) w/serial & parallel
Bump the nunmber of v2 B-tree records for the random 4-level B-tree update
test by another 25,000 records.
Tested on:
MacOSX/64 10.11.2 (amazon) w/serial & parallel
(Too minor to require h5committest)
Clean up many mismatches between malloc/free and H5MM_malloc/H5MM_xfree
in the library and tests (and use of H5free_memory and H5Dvlen_reclaim). Also
make H5Ocopy use a private version of H5Lexists, which doesn't internally
throw (and suppress) errors when an object (or the path to it) isn't found in
the destination.
Tested on:
MacOSX/64 10.11.2 (amazon) w/serial & parallel
(h5committest forthcoming)
Bump number of records for level 4 B-tree test, so that it's more likely to
always get to level 4.
Tested on:
MacOSX/64 10.11.2 (amazon) w/serial & parallel
(h5committest forthcoming)
Add 'update' operation to v2 B-trees, which will insert a new record, or
modify an existing one, depending on if the record exists or not.
Tested on:
MacOSX/64 10.11.2 (amazon) w/serial & parallel
(h5committest forthcoming)
Bring r28708 from revise_chunks branch:
Fix earray, farray and btree2 use of incorrect file pointer when two files
are opened and used to access the data structure. Misc. minor code cleanups
as well.
Tested on:
MacOSX/64 10.11.2 (amazon) w/serial & parallel
h5committest forthcoming
Revisions to normalize revise chunks vs. trunk, plus push dataset metadata
changes into the cache immediately (instead of holding them within the dataset
data structures).
Tested on:
MacOSX/64 10.11.2 (amazon) w/serial & parallel
(h5committest not required on this branch)
Fix tests accordingly and fix misuse of hbool_t in various places
Fix initialization of H5Pgcpl/ocpl structs in property decoding routines
Tested on:
Linux/32 (jam)
Linux/64 (platypus)
Linux/PPC64 (ostrich)
MacOSX/64 10.11
r27860-27883
r27892-27916
Tested on: - h5committest
- jam (parallel) fails with an existing, unrelated MPI config error
- platypus fails with due to an existing, unrelated cmakehdf5 error
where it does not recognize --enable-fortran2003.
Normalization changes that wouldn't otherwise be necessary if the VDS branch
wasn't coming in shortly.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
(h5committest forthcoming)
Clean up warnings and some normalization against trunk.
Tested:
McaOSX/64 10.10.5 (amazon) w/serial & parallel
(h5committest not required on this branch)
Close FAPL for external link test, to fix infinite loop closing the library.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial
(too minor to require h5committest)
Refactor property list code to "deep copy" properties in the correct way,
retraining the rest of the library to copy & release things correctly. This
cleans up another batch of memory leaks, etc. within the library.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
Linux/32 2.6.x (jam) w/serial & parallel
(h5committest forthcoming)
compatible between 32 and 64 bit systems.
Expand cross platform property list encode/decode testing.
Fix warning in H5P__fill_value_enc.
Tested: jam, koala, ostrich (h5committest), ummon
NOTES:
- Developers will have to run autogen.sh before building with the autotools.
- autogen.sh takes the -p option to mimic the old bin/reconfigure behavior.
- The generated error, overflow and version headers have been left in place.
- The generated H5LT parser code has also been left in place.
- There are no changes for CMake users at this time.
Tested on: h5committest
Merge in part of Neil's property list fixes: Fix a minor memory leak,
add some sanity checks, clean up the code a little, and verify that encoding/
decoding default versions of the property lists works correctly.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial
(Too minor to require h5committest)
Complete revamp of package initialization/shutdown mechanism in the library.
Each package now has a single init/term routine.
This new way should avoid packages being re-initialized during library
shutdown and is also be _much_ more proactive about giving feedback for
resource leaks internal to the library.
Introduces a new "module" header file for packages in the library
(e.g src/H5Fmodule.h) which sets up some necessary package configuration macros
for the FUNC_ENTER/LEAVE macros. (The VFL drivers have their own slightly
modified version of this header, src/H5FDdrvr_module.h)
Also cleaned up a bunch of resources leaks all across the library and tests,
along with addressing many warnings, as I encountered them.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
Linux/64 3.10.x (kituo) w/serial & parallel
Linux/64 2.6.x (ostrich) w/serial
Bring the "metadata rings" code from its branch (mdc_rings_v2) to the trunk.
(This change will support the page buffering feature)
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
(h5committest forthcoming)
Fix handling of layout version number.
Other minor fixes/cleanup.
NOTE: This commit changes the file format for VDS, all files must be
re-generated.
Tested: ummon
gcc 4.9.2 was used to create the warning list
- implicit casts
- shadowed variables
- various enum issues
- other minor fixes (comments, unused macros, etc.)
Tested on: h5committest
The only remaining code consists of a few floating-point tests
that rely on pre-generated and checked-in VMS files. These have
been left alone, even though they will not be possible to
recreate, since testing VMS float behavior is still important.
Tested on: h5committest
Tested w/ h5committest
NOTES: - The manifest may still be messed up.
- Cmake fails since the dual binary work needs to be merged with
this repo's CMake externals.
numbers of elements selected, incorrect "slice" through limited dimensions,
incorrect number of printf substitutions.
Patch source selection space extent with bounds of selection if extent is
unknown before returning via H5Pget_virtual_srcspace.
Write updated VDS dataspace to file when it changes due to unlimited selections.
Other minor fixes/cleanup.
Tested: ummon
Renamed a few "h5tri_t extended" variables to "h5tri_t was_extended".
Apparently, "extended" is a typedef name someplace in the headers used
on Solaris, which causes potentially confusing warnings to be emitted.
Tested on: h5committest
Solaris w/ Solaris Studio (emu)
Description:
XL compilers in ostrich (PowerPC64 linux) fail in test/dt_arith
because of the removal of the LLONG_TO_LDOUBLE_CORRECT (removed in
r26625) and LDOUBLE_TO_LLONG_ACCURATE (removed in r26623).
Solution:
Reverse revisions
r26623: bring back LDOUBLE_TO_LLONG_ACCURATE configure macro
r26625: bring back LLONG_TO_LDOUBLE_CORRECT configure macro
r26627: bring back WANT_DATA_ACCURACY configure macro which is
used together with the above two macros. This also brings
back the enable-dconv-accuracy configure option.
Tested:
h5committested.
Also tested in ostrich using the XL compilers.
Implement support for H5Pencode/decode with VDS properties.
Testing for H5Pencode/decode with VDS.
Relax assertion check for number of elements written to buffer as we do not
check for overlaps in mappings.
Other minor fixes/cleanup.
Tested: ummon
