jhendersonHDF
46f7aa75fd
Fix H5F_get_access_plist to copy file locking settings ( #4030 )
...
H5F_get_access_plist previously did not copy over the file locking settings
from a file into the new File Access Property List that it creates. This would
make it difficult to match the file locking settings between an external file
and its parent file.
2024-02-22 14:52:36 -06:00
Christoph Niethammer
f1e8f42b5a
Replace deprecated Fortran 'include mpif.h' with 'USE mpi' ( #4031 )
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With MPI 4.1 the use of the mpif.h include file has been deprecated. Codes
should transition to USE mpi or USE mpi_f08.
Signed-off-by: Christoph Niethammer <niethammer@hlrs.de>
2024-02-21 14:04:38 -06:00
H. Joe Lee
d4b43e0b43
Check argument for CMake REGEX FCMangle.h. ( #4029 )
2024-02-21 13:54:24 -06:00
mattjala
0f56048a04
Test vlen sequence IO in API tests ( #4027 )
2024-02-21 13:52:39 -06:00
Sean McBride
7aed6abd52
Replaced last sprintf with snprintf ( #4007 )
...
* Replaced last sprintf with snprintf
To have the size of the buffer, it was required to change a function signature, and change all users of it.
In most cases, determining the buffer size wasn't trivial and so SIZE_MAX is passed. But at least this improves the infrastructure. Someone can later figure out the correct sizes.
2024-02-20 12:19:50 -05:00
H. Joe Lee
f73da83a94
Remove oneapi return value warning. ( #4028 )
2024-02-19 11:08:38 -06:00
Allen Byrne
02a57328f7
Grep for error messages instead of comparing files ( #4024 )
2024-02-16 09:14:22 -08:00
Allen Byrne
bdddf43f1a
Correct String FIND for runTest and grepTest ( #4022 )
2024-02-15 17:49:32 -06:00
Allen Byrne
7392a102d8
Delete old snapshot binaries after new snapshots are created ( #4020 )
2024-02-15 15:32:01 -06:00
Scot Breitenfeld
410c18b59f
included best practices of using coll. metadata APIs ( #4018 )
2024-02-15 08:19:52 -08:00
mattjala
4023fbcfbb
Add compound subset ops on attributes to API tests ( #4005 )
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* Add partial compound io on attributes to API tests
2024-02-14 11:15:01 -06:00
Allen Byrne
9dc82da3df
separate out individual checks for string removal ( #4015 )
2024-02-14 09:56:26 -06:00
H. Joe Lee
1414693350
Add C in project line for CMake to fix #4012 . ( #4014 )
2024-02-14 07:38:21 -06:00
Glenn Song
14ed93e749
Update install texts ( #4010 )
...
* Update INSTALL_CMake.txt as necessary
* Update remaining docs that use HDF5_USE_GNU_DIRS
* Update options in HDFMacros in HDF5Examples
2024-02-14 07:37:18 -06:00
jhendersonHDF
be956ea302
Fix some output issues with ph5diff ( #4008 )
2024-02-13 09:06:33 -06:00
Larry Knox
d888cf99db
Don't add files and directories with names that begin with ., or that match *autom4te* to release tar & zip files. ( #4009 )
...
Filter messages with 'ulimit -s' out of test output for runTest.cmake.
2024-02-13 08:42:39 -06:00
Allen Byrne
741c381479
Add hl and cpp ABI reports to daily build ( #4006 )
...
* Add other non-fortran lib abi reports
* removing hl_cpp abi reports because of lack of public symbols
2024-02-13 08:30:23 -06:00
Sean McBride
f309fcebbd
Issue #1824 : Replaced most remaining sprintf with safer snprint ( #4003 )
2024-02-13 08:22:17 -06:00
H. Joe Lee
beee0a327d
Add a missing file into Makefile.am for MinGW Autotools build error. ( #4004 )
2024-02-13 08:19:14 -06:00
Allen Byrne
18c7a6c36c
remove incorrect check for environ ( #4002 )
2024-02-09 16:03:33 -06:00
Sean McBride
623907f397
Modern C++ dtor declarations ( #1830 )
...
* C++ dtor modernization
- Replaced a bunch of empty dtors with `= default`
- Removed deprecated `throw()`. In C++11, dtors are `noexcept` by default.
*
2024-02-09 11:29:55 -06:00
jhendersonHDF
33bb1970b8
Fix build issue and some warnings in H5_api_dataset_test.c ( #3998 )
2024-02-09 11:05:54 -06:00
jhendersonHDF
a4c707a832
Fix incompatible pointer type warnings in object reference examples ( #3999 )
2024-02-09 11:04:48 -06:00
Allen Byrne
0a93152541
Fix overwritten preset names ( #4000 )
2024-02-09 11:03:33 -06:00
bmribler
868f23f94e
Updated information about obtaining the HDF5 source code to use the repos. ( #3972 )
2024-02-08 08:26:30 -08:00
H. Joe Lee
6345c1650a
Remove oneapi/clang compiler printf() type warning. ( #3994 )
...
* Remove oneapi/clang compiler printf() type warning from h5ex_t_opaque.c.
2024-02-08 09:56:20 -06:00
Larry Knox
16e9937111
Fix h5watch test failures to ignore system warnings on ppc64le. ( #3997 )
2024-02-08 09:53:33 -06:00
Allen Byrne
6b22af7c43
Add abi-complience check and upload to releases ( #3996 )
2024-02-08 07:58:08 -06:00
H. Joe Lee
0ee99a6656
Fix broken links caused by examples relocation. ( #3995 )
2024-02-07 20:17:53 -06:00
vchoi-hdfgroup
49cce9173f
Fix for github issue #2414 : segfault when copying dataset with attrib… ( #3967 )
...
* Fix for github issue #2414 : segfault when copying dataset with attributes.
This also fixes github issue #3241 : segfault when copying dataset.
Need to set the location via H5T_set_loc() of the src datatype
when copying dense attributes.
Otherwise the vlen callbacks are not set up therefore causing seg fault
when doing H5T_convert() -> H5T__conv_vlen().
2024-02-06 14:59:27 -06:00
mattjala
824bbf5cbe
Sync API tests with vol-tests ( #3940 )
2024-02-06 14:57:50 -06:00
Dana Robinson
2fab2fc9d0
Update README with new release info ( #3993 )
2024-02-06 12:26:23 -08:00
Dana Robinson
ca70d05faa
Update release schedule ( #3992 )
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* Add 2024, remove 2022
* Update README.md
2024-02-06 12:19:46 -08:00
dependabot[bot]
6034d14ccd
Bump the github-actions group with 6 updates ( #3981 )
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Bumps the github-actions group with 6 updates:
| Package | From | To |
| --- | --- | --- |
| [EndBug/add-and-commit](https://github.com/endbug/add-and-commit ) | `9.1.3` | `9.1.4` |
| [actions/setup-java](https://github.com/actions/setup-java ) | `3` | `4` |
| [ilammy/msvc-dev-cmd](https://github.com/ilammy/msvc-dev-cmd ) | `1.12.1` | `1.13.0` |
| [actions/download-artifact](https://github.com/actions/download-artifact ) | `4.1.0` | `4.1.1` |
| [actions/cache](https://github.com/actions/cache ) | `3` | `4` |
| [github/codeql-action](https://github.com/github/codeql-action ) | `3.22.12` | `3.23.2` |
Updates `EndBug/add-and-commit` from 9.1.3 to 9.1.4
- [Release notes](https://github.com/endbug/add-and-commit/releases )
- [Commits](1bad3abcf0...a94899bca5https://github.com/actions/setup-java/releases )
- [Commits](https://github.com/actions/setup-java/compare/v3...v4 )
Updates `ilammy/msvc-dev-cmd` from 1.12.1 to 1.13.0
- [Release notes](https://github.com/ilammy/msvc-dev-cmd/releases )
- [Commits](https://github.com/ilammy/msvc-dev-cmd/compare/v1.12.1...v1.13.0 )
Updates `actions/download-artifact` from 4.1.0 to 4.1.1
- [Release notes](https://github.com/actions/download-artifact/releases )
- [Commits](f44cd7b40b...6b208ae046https://github.com/actions/cache/releases )
- [Changelog](https://github.com/actions/cache/blob/main/RELEASES.md )
- [Commits](https://github.com/actions/cache/compare/v3...v4 )
Updates `github/codeql-action` from 3.22.12 to 3.23.2
- [Release notes](https://github.com/github/codeql-action/releases )
- [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md )
- [Commits](012739e508...b7bf0a3ed3
2024-02-06 09:09:41 -08:00
H. Joe Lee
2b33423c94
Remove ADB signature from RELEASE.txt. ( #3986 )
2024-02-06 09:52:27 -06:00
H. Joe Lee
33f1a00baf
Add a missing left parenthesis in RELEASE.txt. ( #3990 )
2024-02-06 09:49:36 -06:00
H. Joe Lee
33ae371dbb
chore: fix typo ( #3989 )
...
close #144
2024-02-06 09:48:08 -06:00
Allen Byrne
255ab716f2
Make platform specific test presets for windows and macs ( #3988 )
...
* Enable mac tests
* Add platform test workflows to examples
2024-02-06 08:11:45 -06:00
Allen Byrne
adee148f03
Skip mac bintest until more reliable ( #3983 )
2024-02-02 10:31:55 -06:00
Scot Breitenfeld
2c3d23d1e6
corrected warning: implicit conversion changes signedness ( #3982 )
2024-02-02 08:11:16 -06:00
Scot Breitenfeld
6e42618f53
Fixed spacing issues in example tests. ( #3979 )
...
* The space difference in the Fortran examples must be fixed to match the expected output for compression filter examples.
2024-02-01 23:42:58 -06:00
H. Joe Lee
0843a8c1be
Add h5dump tests that require subfiling VFD ( #3879 )
2024-02-01 09:02:47 -08:00
Stefano Probst
5bdd685311
Create CITATION.cff ( #3927 )
...
Add citation source based on http://web.archive.org/web/20230610185232/https://portal.hdfgroup.org/display/knowledge/How+do+I+properly+cite+HDF5%2C+HDFView%2C+and+HSDS+in+a+paper . Created with https://citation-file-format.github.io/cff-initializer-javascript/
2024-02-01 08:28:17 -08:00
Scot Breitenfeld
9c327bc616
append '-WF,' when passing C preprocessor directives to the xlf compiler ( #3976 )
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* append '-WF,' when passing C preprocessor directives to the xlf compiler
* strip path from compiler name
2024-01-31 23:04:43 -06:00
mattjala
d1ed02d49f
Clarify vlen string datatype message ( #3950 )
2024-01-31 16:16:49 -06:00
Larry Knox
bca1dc10a3
Replace 'T2' with ' ' to avoid failure to match expected output due to ( #3975 )
...
system tab difference.
2024-01-31 15:49:25 -06:00
Allen Byrne
595b5099ea
Add binary testing to CI testing ( #3971 )
...
* Add binary test job
* Correct names of jobs
* Add build mode to binary names
* Limit packaging execution
* Make mac DragNDrop optional
* Format if checks
* fix checks for TS
* Allow examples to be packaged
* Correct if NOT format
* Correct configure and workflow call
* Separate out CMake/Autotools Parallel job
* Correct binary examples path
* Correct dir path for windows test
* Correct paths and add extlibs
* Windows binaries do not have a share folder
2024-01-31 08:13:15 -06:00
Allen Byrne
45ac12e6b6
Explicitly use PROJECT_BINARY_DIR in target copy location ( #3974 )
2024-01-30 16:21:21 -06:00
Scot Breitenfeld
3a3501df2d
h5 compiler wrappers now pass all arguments passed to it to the compile line ( #3954 )
...
* The issue was that the "allargs" variable was not being used in the final command of the compiler wrapper. Any entries containing an escaped quote (\", \') or other non-matching argument (*) would not be passed to the compile line. I have fixed this problem by ensuring all arguments passed to the compiler wrapper are now included in the compile line.
* added testing for compiler wrappers
2024-01-30 12:20:58 -06:00
Scot Breitenfeld
791915e92a
Fixed XL and gfortran errors ( #3968 )
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* fixed XL and Gfortran errors
* fixed data type len array
2024-01-30 09:05:20 -08:00
