----------------------
./bin/snapshot
Made same fix as for the release script yesterday.
./src/H5D.c
./src/H5Dprivate.h
./src/H5G.c
./src/H5Gprivate.h
./src/H5Gpublic.h
./src/H5O.c
./src/H5Oprivate.h
./src/H5RA.c
./src/H5RAprivate.h
./src/H5T.c
./src/H5Tprivate.h
Improved object type checking. Instead of determining the
object type by trying to open each of the possible types, we
keep a table of associations between object type number (like
H5G_GROUP, H5G_DATASET, H5D_TYPE, and H5D_RAGGED) and an `isa'
function that returns true if the object header has the right
messages to make the object a particular type. This mechanism
also allows specialization of object types by permitting an
object to satisfy more than one `isa' function.
Added `isa' functions for groups, datasets, ragged arrays, and
committed data types.
./src/H5config.h.in
Added HAVE_STAT_ST_BLOCKS. I thought this had already been
added, but apparently not.
./tools/h5ls.c
Removed system include files since they're already included by
H5private.h and since I wasn't including them portably anyway.
By default, 1-byte integer types are printed as integer values
instead of ASCII characters. However, the `-s' or `--string'
command-line switch causes the data to be interpretted as
ASCII. String data types are always printed as character
data.
Ragged arrays are now identified as ragged arrays and h5ls
doesn't descend into the group automatically. This uses the
new object type specialization stuff.
./tools/h5tools.c
./tools/h5tools.h
Added the ability to print 1-byte integer types as either
ASCII or numeric data instead of always ASCII. The default is
to print as numeric data.
----------------------
./MANIFEST
Added new Pablo files HDF5record_RT.h and ProcIDs.h
./acconfig.h
./configure [REGENERATED]
./configure.in
./src/H5.c
./src/H5Vprivate.h
./src/H5config.h.in [REGENERATED]
./src/H5private.h
./src/H5public.h
./test/big.c
Added more configuration stuff for the Win32 environment. Removed all
the #ifdef WIN32 from the source and replaced them with OS-independent
stuff. Specifics follow:
Check for non-Posix.1 `st_blocks' field in `struct stat' which is used
by the big file test to decide if the file system supports holes. If
the st_blocks field isn't present then we just skip the test.
Configure checks for <io.h> <sys/resource.h> <sys/time.h> and
<winsock.h> and defines HAVE_IO_H, HAVE_SYS_RESOURCE_H,
HAVE_SYS_TIME_H and HAVE_WINSOCK_H when they're found.
Configure checks whether both <sys/time.h> and <time.h> can be
included and defines SYS_TIME_WITH_TIME if so. Otherwise include only
<sys/time.h> or <time.h> even if both exist.
Configure checks sizeof(__int64) and defines SIZEOF___INT64 to the
result or to zero if __int64 isn't defined. The source uses `long
long' in preference to `__int64'.
Removed null WIN32 definition for `inline' since such a definition
already exists in H5config.h
Protected gettimeofday() calls in debugging code with
HAVE_GETTIMEOFDAY instead of WIN32.
./src/H5F.c
./src/H5Flow.c
./src/H5Fmpio.c
./src/H5Fsec2.c
./src/H5Fstdio.h
./src/H5P.c
./src/H5Tconv.c
./src/H5private.h
Removed #include of system files from library source files and
consolodated them into H5private.h where they're protected by various
configuration macros (most of them were duplicated there already
anyway).
./test/big.c
./test/chunk.c
./test/cmpd_dset.c
./test/dsets.c
./test/dtypes.c
./test/extend.c
./test/external.c
./test/fillval.c
./test/flush1.c
./test/flush2.c
./test/iopipe.c
./test/links.c
./test/mount.c
./test/mtime.c
./test/overhead.c
./test/ragged.c
./test/shtype.c
./test/unlink.c
Protected system #include's with #ifdef's from H5config.h.
Undefined NDEBUG since some of the tests rely on assert() to check
return values.
Removed WIN32 definitions for __unused__ since this can be controlled
by the definition of HAVE_ATTRIBUTE in H5config.h
./test/testhdf5.h
Removed the CLEAN_CMD definition because we no longer use it.
Albert's cleanup() functions replaced it.
./test/fillval.c
Initialized auto hid_t variables to fix warnings in error recovery
code when data flow analysis is turned on in compilers.
./test/h5tools.c
Initialized an auto variable to fix a compiler warning.
./test/chunk.c
./test/ragged.c
The WIN32 had some unsigned variables changed to signed because the
compiler generates warnings when coercing unsigned to double(?). I
changed them back to unsigned because they really are unsigned
quantities. If this the change was just to shut up extraneous warnings
then perhaps a compiler flag can do the same; otherwise if the
compiler generates bad code then we should supply a patch file instead
messing up source code with bug work-arounds.
./src/H5detect.c
Protected system #include's with #ifdef's from H5config.h thereby
removing a WIN32.
If getpwuid() doesn't exist (HAVE_GETPWUID) then we assume that
`struct passwd' doesn't exist either (we don't really need it in that
case).
The H5T_NATIVE_LLONG and H5T_NATIVE_ULLONG are defined in terms of
`long long' or else `__int64' or else `long' depending on what's
available.
./src/H5Flow.c
./src/H5Ofill.c
Added __unused__ to some function arguments that aren't used when
assertions are turned off.
./src/H5V.c
Changed an auto variable name in some hand-inlined code to get rid of
a warning about the variable shadowing a previous auto.
hdf5/doc/html/RM_H5I.html
hdf5/doc/html/RM_H5R.html
hdf5/doc/html/References.html
Labelled all files in hdf5/doc/src/ as "do not distribute."
Added hdf5/doc/html/DDL.html, but labelled as "do not distribute."
References.html
New User Guide documents.
RM_H5I.html Identifier Interface
RM_H5R.html Reference Interface
Created these two sections of Reference Manual.
Intro
======
H5.intro.html
Major rewrite to Groups section. New Example 7 (groups).
Added TOC and requisite links.
Numbered sections.
Labelled figures and centered those that were not.
Fixed table formatting.
===========
User Guide
===========
H5.user.html
Linked in Chunking.html.
Linked in References.html.
Linked in DDL.html.
Chunking.html
Minor edits.
DDL.html
References.html
New documents.
Datatypes.html
Added "R Reference" to base name description and
"H5T_STD_ROBJ -- Reference to an entire object
in a file" to list of datatype names.
Files.html
H5Fflush
Added scope parameter.
Groups.html
Removed references to "current working group."
Removed H5Gpush, H5Gpop, and H5Gset functions.
Removed note that H5Glink and H5Gunlink were not implemented.
=================
Reference Manual
=================
RM_*.html and Tools.html
Updated Reference Manual internal cross-linking (the link
banner at the top and bottom of each page).
Changed
Returns SUCCEED (0) if successful;
otherwise FAIL (-1).
to read
Returns a non-negative value if successful;
otherwise returns a negative value.
and several derived changes where circumstances differred
only slightly.
Minor copy edits throughout.
RM_H5.html
Corrected H5open "Purpose" statement.
RM_H5A.html
Changed H5Aget_name return type to hssize_t.
RM_H5F.html
H5Fflush
Added scope parameter.
Added H5Freopen.
RM_H5Front.html
Reordered listing of interfaces to alphabetical order (H5,
H5A, H5D, ...)
Added H5I, H5R, and H5RA.
RM_H5G.html
H5Gopen
Edited "Description."
H5Gget_objinfo
Added named datatype to list of valid values for loc_id.
RM_H5I.html Identifier Interface
New section.
RM_H5P.html
Added H5Pset_fill_value and H5Pget_fill_value.
Several minor copy edits.
RM_H5R.html Reference Interface
New section.
H5RA.html
Essentially a new section. It was in the tree previously,
but it did not actually have content.
RM_H5S.html
Changed H5Sget_select_npoints return type to hssize_t.
Tools.html
Updated h5dump documentation.
----------------------
./MANIFEST
./test/th5s.h5 [NEW]
./test/th5s.c
Added a test to make sure that creating a data space with too
large a rank fails.
Added a test to make sure that reading a file that has a
dataset with a space with too large a rank fails. Actually,
this one is a little weird: the code that reads the data space
message assumes the space is scalar if the message cannot be
read. Fortunately the layout message fails also, preventing
the dataset from being opened. However, since the data type
message is still visible h5ls will report that the object is a
named data type.
./test/space_overflow.c [NEW]
This is the little program that makes the th5s.h5 file.
./src/H5A.c
./src/H5R.c
./src/H5Sselect.c
Updated trace info.
./src/H5Olayout.c
./src/H5Osdspace.c
Added code to fail if the dimensionality is too large when
decoding a layout or simple data space message.
./src/H5Oprivate.h
Redefined H5O_LAYOUT_NDIMS in terms of H5S_MAX_RANK.
./src/H5P.c
./src/H5S.c
Check for ndims>H5S_MAX_RANK in API function calls, added
assert to internal functions.
./src/H5V.c
Changed a `<' to an `<=' in an assert.
./test/flush2.c
Includes stdlib.h for getenv().
./tools/h5tools.c
Able to handle up to H5S_MAX_RANK dimensions during output.
