Commit Graph

16660 Commits

Author SHA1 Message Date
Allen Byrne
9d50ed5287 Merge pull request #501 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit 'e4e261173f85de6f83651abd6950793d7b930a20':
  HDFFV-10186 more whitespace formatting
2017-05-10 10:46:37 -05:00
Allen Byrne
e4e261173f HDFFV-10186 more whitespace formatting 2017-05-10 10:12:19 -05:00
Allen Byrne
900a110c89 Merge pull request #497 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '4f36f613a6de09d8ec197b7e5a4a72dbdb9417a2':
  HDFFV-10186 Whitespace change Mostly tabs to spaces Remove Modifications comments
2017-05-10 08:48:46 -05:00
Vailin Choi
dc0276a81c Merge pull request #498 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to develop
* commit '8482314d7db83c47947af8ca50457cdb1ddae366':
  Fix for HDFFV-10051 Fix missing declaration for H5D__layout_compact_dirty_test(). Tested on mayll and osx1010test.
2017-05-09 17:34:15 -05:00
Vailin Choi
8482314d7d Fix for HDFFV-10051
Fix missing declaration for H5D__layout_compact_dirty_test().
Tested on mayll and osx1010test.
2017-05-09 17:30:20 -05:00
Allen Byrne
4f36f613a6 HDFFV-10186 Whitespace change
Mostly tabs to spaces
Remove Modifications comments
2017-05-09 16:52:05 -05:00
Vailin Choi
e062a77e0e Merge pull request #494 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to develop
* commit 'd436db6c6efdfe7e9dbe06a642715116ef0eb5e3':
  Fix for the two issues reported in HDFFV-10051 Modifications made based on the review comments from pull request #494 Tested on moohan, mayll, kituo, platypus, ostrich, osx1010test, quail, emu.
  Fix for the two issues reported in HDFFV-10051: (1) Repeated open/close of a compact dataset fails due to the increment of ndims in the dataset structure for every open. --This is done only for chunked dataset via H5D__chunk_set_sizes(). (2) layout "dirty" flag for a compact dataset is not reset properly after flushing the data at dataset close. --Reset the "dirty" flag before flushing the message to the object header via H5O_msg_write(). Tested on moohan, kituo, platypus, ostrich, osx1010test, quail, emu.
2017-05-09 13:18:26 -05:00
Allen Byrne
850a5956c0 Merge pull request #496 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '5263bc9029dcf06779a0ec2b89688912443a4bfa':
  HDFFV-10186 Whitespace changes Mostly replacing tabs with spaces Removed empty mod sections
2017-05-09 12:41:38 -05:00
Allen Byrne
5263bc9029 HDFFV-10186 Whitespace changes
Mostly replacing tabs with spaces
Removed empty mod sections
2017-05-09 10:41:00 -05:00
Vailin Choi
d436db6c6e Fix for the two issues reported in HDFFV-10051
Modifications made based on the review comments from pull request #494
Tested on moohan, mayll, kituo, platypus, ostrich, osx1010test, quail, emu.
2017-05-08 22:14:20 -05:00
Vailin Choi
6a4f1187cc Fix for the two issues reported in HDFFV-10051:
(1) Repeated open/close of a compact dataset fails due to the
increment of ndims in the dataset structure for every open.
--This is done only for chunked dataset via H5D__chunk_set_sizes().
(2) layout "dirty" flag for a compact dataset is not reset
properly after flushing the data at dataset close.
--Reset the "dirty" flag before flushing the message to the object header
via H5O_msg_write().
Tested on moohan, kituo, platypus, ostrich, osx1010test, quail, emu.
2017-05-06 23:40:44 -05:00
Larry Knox
7916b84582 Merge pull request #491 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
* commit '28f4873e7fc93de865c3e180f09d7221569f64ff':
  Update one missed version string.
  Update release_docs/HISTORY-1_10.txt and RELEASE.txt after HDF5 1.10.1 release.
2017-05-05 16:58:26 -05:00
Allen Byrne
58e9796e38 Merge pull request #493 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '6d0d9d46dab559c04bba0b8810a3e0630ce44ad2':
  Fix typo in name of ddl file in command
2017-05-05 16:57:45 -05:00
Allen Byrne
6d0d9d46da Fix typo in name of ddl file in command 2017-05-05 16:54:28 -05:00
lrknox
28f4873e7f Update one missed version string. 2017-05-05 10:47:23 -05:00
lrknox
e2ad2751dc Update release_docs/HISTORY-1_10.txt and RELEASE.txt after HDF5 1.10.1
release.
2017-05-05 10:45:24 -05:00
Allen Byrne
494029c27d Merge pull request #490 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '9076e74d38f10d9d71a41ceeb118777468b6b530':
  Fix name to copy
2017-05-05 10:15:20 -05:00
Allen Byrne
9076e74d38 Fix name to copy 2017-05-05 10:05:59 -05:00
Allen Byrne
b8533e75af Merge pull request #488 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit 'c90f72a0d44ab53d16e0c7979363565dff30cf24':
  Correct name of file to copy
2017-05-04 16:47:45 -05:00
Allen Byrne
c90f72a0d4 Correct name of file to copy 2017-05-04 16:42:32 -05:00
Allen Byrne
e10313d556 Merge pull request #487 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '412f68103ecc9e75a895dd057ad28d0e456f3a58':
  Use correct var types for data
2017-05-04 14:10:37 -05:00
Allen Byrne
412f68103e Use correct var types for data 2017-05-04 13:32:58 -05:00
Allen Byrne
5d921b8fee Merge pull request #486 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '006e56802196ee6a43261aec7027815ad24ad3db':
  Remove duplicate defines
  Add test file to list and fix test typo
  Make test scripts fail if result files are created
2017-05-04 13:15:48 -05:00
Allen Byrne
006e568021 Remove duplicate defines 2017-05-04 11:41:47 -05:00
Allen Byrne
bcaf579ac4 Add test file to list and fix test typo 2017-05-02 15:54:40 -05:00
Allen Byrne
7608b264e4 Make test scripts fail if result files are created 2017-05-02 12:36:02 -05:00
Larry Knox
3b81a29c46 Merge pull request #482 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
* commit 'be49a9422654ac9eec07ffe3599b4a7f7561cdb6':
  Comment out install-exec-hooks to remove libdynlib* files.  Allen did the same for hdf5_1_10 and hdf5_1_10_1 because the hooks don't reliably work.  In the develop branch they are causing make install failures because the autotools' install commands sometimes attempt to chmod these files when they no longer exist.
2017-05-01 22:08:00 -05:00
Dana Robinson
734aebc395 Rework of the POSIX file open permissions and macros to clean up
HDopen() calls.

Also fixed a minor const warning in the core VFD.
2017-04-28 18:13:22 -04:00
lrknox
be49a94226 Comment out install-exec-hooks to remove libdynlib* files. Allen did
the same for hdf5_1_10 and hdf5_1_10_1 because the hooks don't reliably
work.  In the develop branch they are causing make install failures
because the autotools' install commands sometimes attempt to chmod these
files when they no longer exist.
2017-04-28 16:37:22 -05:00
Larry Knox
fc4e8ea5ec Merge pull request #481 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '0bf41bec5aab468036f32afb287f224d266edf7a':
  Add extra files to be copied
2017-04-28 10:45:05 -05:00
Dana Robinson
d3b664b6a7 Changed the Windows POSIX open() file permissions to be correct
according to MSDN. Partial fix for HDFFV-9630.
2017-04-28 08:11:29 -07:00
Allen Byrne
0bf41bec5a Add extra files to be copied 2017-04-27 16:32:51 -05:00
Dana Robinson
09882f7ccd Merge pull request #480 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:cmake_header_create to develop
* commit '80d57c242a15edd983673e9bad4e966c72975289':
  Set the HDF5_GENERATE_HEADERS CMake option to default to ON and removed the option from the CMake cache init files.
2017-04-27 15:07:57 -05:00
Dana Robinson
80d57c242a Set the HDF5_GENERATE_HEADERS CMake option to default to ON and removed
the option from the CMake cache init files.

Fixes HDFFV-10184
2017-04-27 15:18:18 -04:00
Larry Knox
c2729b6ad1 Merge pull request #478 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit 'a302f508a51ba9fe109aaacda24601d5c458fe8d':
  Change position of declaration to top of block
2017-04-27 08:55:41 -05:00
Allen Byrne
a302f508a5 Change position of declaration to top of block 2017-04-27 08:52:34 -05:00
Vailin Choi
2d535d8c88 Merge pull request #473 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to develop
* commit 'bacb45b38ae8513024baf2dfe08c8918625489e2':
  Modifications based on pull request review. Made couple changes based on the review comments.
  Incorporate patch from GE Healthcare (HDFFV-9934) This is the same patch that had already been integrated to 1.8 branch (pull request #387). Tested on moohan, ostrich, platypus, emu, osx1010test, quail, kituo, mayll.
2017-04-26 14:04:24 -05:00
Vailin Choi
bacb45b38a Modifications based on pull request review.
Made couple changes based on the review comments.
2017-04-26 14:00:34 -05:00
Vailin Choi
cb8e82a53d Incorporate patch from GE Healthcare (HDFFV-9934)
This is the same patch that had already been integrated to 1.8 branch (pull request #387).
Tested on moohan, ostrich, platypus, emu, osx1010test, quail, kituo, mayll.
2017-04-25 18:08:53 -05:00
Allen Byrne
9c30b39316 Merge pull request #470 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '2420df5a85c64a20d98165c5b8c891899b31da83':
  HDFFV-10170 revert entire change
2017-04-25 16:54:02 -05:00
Allen Byrne
2420df5a85 HDFFV-10170 revert entire change 2017-04-25 16:34:52 -05:00
Larry Knox
4d1d2b4eda Merge pull request #468 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
* commit '89fbe00dec8187305b518d91c3ddb7d910665f79':
  Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to hdf5_1_10
  Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
2017-04-25 16:09:10 -05:00
Larry Knox
89fbe00dec Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to hdf5_1_10
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
  Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
  Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
  Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
  Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
2017-04-25 16:05:36 -05:00
lrknox
1073ac45ef Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. 2017-04-25 15:59:21 -05:00
Dana Robinson
e8a0726636 Merge pull request #464 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:bin_trace_complain to develop
* commit 'b1a5ba405393da68028cf1c8b159a3abb51d2187':
  Updated bin/trace to emit errors and reordered autogen.sh processing so that script failures leave the library in a non-compilable state, making it harder to ignore errors.
2017-04-25 12:52:41 -05:00
Dana Robinson
b1a5ba4053 Updated bin/trace to emit errors and reordered autogen.sh processing
so that script failures leave the library in a non-compilable state,
making it harder to ignore errors.
2017-04-25 02:09:55 -04:00
Allen Byrne
9d84abe503 Merge pull request #457 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '0fb5ce7ad50664f800ffe7e107e0fb0f90f66e12':
  Correct name of native function
  Fix javadoc
  Fix typo
  Signature change requires a ptr
  Change     H5PLsize() signature
  Revert HDFFV-9655
  Changed signature of H5PLgetsize
  Revert HDFFV-9655 by disabling test and not using new function.
  Fix path to actual executable location
  Windows ahs one more directory level
2017-04-24 16:44:35 -05:00
Allen Byrne
0fb5ce7ad5 Correct name of native function 2017-04-24 16:21:42 -05:00
Allen Byrne
c148ad90f0 Fix javadoc 2017-04-24 16:09:39 -05:00
Allen Byrne
bce204f7f3 Fix typo 2017-04-24 15:36:10 -05:00