Commit Graph

16660 Commits

Author SHA1 Message Date
Allen Byrne
c73b30716e Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '9808b44b6c7645ae760bfb497e598ae069827619':
  Added -fno-omit-frame-pointer to gcc flags when symbols when building with debugging symbols.
  Fix for HDFFV-7853 H5Ocopy doesn't work with open identifiers Changes made so that raw data for dataset objects are copied from cached info when possible instead of flushing objects to file and read them back in again.
2017-06-13 16:27:22 -05:00
Vailin Choi
9808b44b6c Merge pull request #573 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to develop
* commit '980d5b4266133490192ceb10ea13e320532c6f03':
  Fix for HDFFV-7853 H5Ocopy doesn't work with open identifiers Changes made so that raw data for dataset objects are copied from cached info when possible instead of flushing objects to file and read them back in again.
2017-06-13 11:52:09 -05:00
Dana Robinson
33048a3922 Merge pull request #575 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop to develop
* commit 'dd567df97b3b2332477d1726094b9647f9daea71':
  Added -fno-omit-frame-pointer to gcc flags when symbols when building with debugging symbols.
2017-06-12 15:46:15 -05:00
Dana Robinson
dd567df97b Added -fno-omit-frame-pointer to gcc flags when symbols when
building with debugging symbols.
2017-06-12 15:37:32 -04:00
Allen Byrne
61517c796f HDFFV-10219: add generated files to memcheck clear command 2017-06-12 12:53:51 -05:00
Allen Byrne
b829420a0d HDFFV-10219: Added keyword SUBSET to h5import list. 2017-06-12 12:22:52 -05:00
Vailin Choi
980d5b4266 Fix for HDFFV-7853 H5Ocopy doesn't work with open identifiers
Changes made so that raw data for dataset objects are copied from cached info when possible instead of flushing objects to file and read them back in again.
2017-06-10 19:40:19 -05:00
Dana Robinson
7a25041caf Merge pull request #572 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop to develop
* commit '005bf26ff83fcd28255a77fb9bbb4a64495cb4a2':
  Revert "Merge pull request #567 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop to develop"
2017-06-09 23:04:03 -05:00
Dana Robinson
005bf26ff8 Revert "Merge pull request #567 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop to develop"
This reverts commit 4242753848, reversing
changes made to b0e79fe6dd.
2017-06-09 18:09:08 -04:00
Scot Breitenfeld
eaedb70001 Merge pull request #571 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:develop to develop
* commit '1ccdb2e23f1c55835aee315e92736c6aed06faf8':
  fixed check output string to match test
2017-06-09 14:47:12 -05:00
M. Scot Breitenfeld
1ccdb2e23f fixed check output string to match test 2017-06-09 12:19:50 -05:00
Dana Robinson
4242753848 Merge pull request #567 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop to develop
Makes all non-global H5O_layout_t structs dynamic (quiets stack warnings).

* commit 'd391d8a690b4d595709e1274882fb5e5e0559f9e':
  * Made STATIC free lists EXTERN for H5O_layout_t. * Made all non-global instances of H5O_layout_t in H5Pdcpl.c dynamic.
  Updated H5O_layout_t dynamic work to use the H5FL interface.
  Made some H5O_layout_t stack allocations dynamic (quiets warnings).
2017-06-08 14:24:48 -05:00
Dana Robinson
d391d8a690 * Made STATIC free lists EXTERN for H5O_layout_t.
* Made all non-global instances of H5O_layout_t in H5Pdcpl.c dynamic.
2017-06-07 18:10:48 -04:00
Dana Robinson
390b5a9feb Updated H5O_layout_t dynamic work to use the H5FL interface. 2017-06-07 13:38:27 -04:00
Dana Robinson
1ccb1b3c1f Made some H5O_layout_t stack allocations dynamic (quiets warnings). 2017-06-06 14:07:09 -04:00
Allen Byrne
b0e79fe6dd Merge pull request #559 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '3525de8fede588e143fcff837ebd1c7b0ad59252':
  Add toolset option
  Synchronize cmake files
  Added toolset and intel checks
2017-06-02 12:46:38 -05:00
Allen Byrne
3525de8fed Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '5cb9c40847d1706ce82a2b2cda4c6c5596b10994':
  Fixed typo in vfd.c from 'updated VFD feature flag' checkin.
  Rework of the POSIX file open permissions and macros to clean up HDopen() calls.
  Changed the Windows POSIX open() file permissions to be correct according to MSDN. Partial fix for HDFFV-9630.
2017-06-02 12:37:37 -05:00
Allen Byrne
0a3f8239e6 Add toolset option 2017-06-02 11:44:51 -05:00
Dana Robinson
5cb9c40847 Merge pull request #483 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:windows_open to develop
* commit '1e9354bcf551c16f3ad9d6a4ad42a2bce827c95e':
  Rework of the POSIX file open permissions and macros to clean up HDopen() calls.
  Changed the Windows POSIX open() file permissions to be correct according to MSDN. Partial fix for HDFFV-9630.
2017-05-31 18:07:03 -05:00
Dana Robinson
1e9354bcf5 Merge branch 'develop' into windows_open 2017-05-31 15:07:49 -07:00
Dana Robinson
5c5ea7e89f Merge pull request #553 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop to develop
* commit '5efda2babf7f4bd7424d147e20b72b0f227f1704':
  Fixed typo in vfd.c from 'updated VFD feature flag' checkin.
2017-05-30 18:35:49 -05:00
Dana Robinson
5efda2babf Fixed typo in vfd.c from 'updated VFD feature flag' checkin. 2017-05-30 16:33:20 -07:00
Allen Byrne
9905db41ee Synchronize cmake files 2017-05-30 11:33:21 -05:00
Allen Byrne
86de942cf5 Added toolset and intel checks 2017-05-30 11:16:11 -05:00
Dana Robinson
56d23f00a7 Merge pull request #548 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:compat_feature_flag to develop
* commit '13d3d4bd0e0b799aa9c3a9b45e445d1f52294d47':
  Added feature flag checks for a few other VFDs in test/vfd.c.
  * Added new public H5FDdriver_query() API call. * Changed return type of H5FD_driver_query() to herr_t. * Updated swmr.c to use H5FDdriver_query() instead of the private call. * Added some flags tests to vfd.c.
  * Made H5FD_driver_query() a private function instead of static. * Moved H5FD_driver_query() to H5FDint.c. * Minor typo fixes in H5I.c. * Updated swmr.c to check the VFD feature flags and skip the   retries test when the VFD is not compatible with H5P_DEFAULT.
  Initialized IDs to -1 and minor code tidy.
  Fixed HDFFV-10214: * Updated comments in the library to accurately reflect the semantics   of the H5FD_FEAT_POSIX_COMPAT_HANDLE flag. * Removed the check for the POSIX compatible handle feature flag   when determining if a VFD supports SWMR. Partial work for HDFFV-10197: * Added a new H5FD_FEAT_DEFAULT_VFD_COMPATIBLE feature flag that is   set when a VFD creates output that is compatible with the default   VFD. Will be used in the testing but might also be generally useful   to users.
2017-05-27 10:24:46 -05:00
Dana Robinson
13d3d4bd0e Added feature flag checks for a few other VFDs in test/vfd.c. 2017-05-26 18:22:07 -04:00
Dana Robinson
343b53d64f Merge branch 'develop' into compat_feature_flag 2017-05-26 17:29:52 -04:00
Dana Robinson
9e75f7eeee Merge pull request #547 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:gcc_flag_cull to develop
* commit 'b6de142cf4a863787dceaa333684615fc190d6d5':
  Chagned gfortran40 to gfortran in a few config files.
2017-05-26 14:29:27 -05:00
Allen Byrne
c70bcaa77f Merge pull request #545 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit 'c059e6ecf7bafc6b5c1c9b8a39e8515e23f52303':
  Spelling
  Enhanced the release note using 'Writing Notes in a RELEASE.txt File'
  Note HDFFV-8611 change
2017-05-26 13:59:25 -05:00
Allen Byrne
c059e6ecf7 Spelling 2017-05-26 13:59:00 -05:00
Dana Robinson
b6de142cf4 Chagned gfortran40 to gfortran in a few config files. 2017-05-26 14:56:23 -04:00
Allen Byrne
7f6443cc0d Enhanced the release note using 'Writing Notes in a RELEASE.txt File' 2017-05-26 13:05:18 -05:00
Dana Robinson
c9121bfdf4 Merge pull request #546 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:gcc_flag_cull to develop
* commit '742e1d5541a488ca1a1772c05833c16a6a73d3ab':
  Fixed misplaced space in config/gnu-flags.
2017-05-26 12:38:18 -05:00
Dana Robinson
742e1d5541 Fixed misplaced space in config/gnu-flags. 2017-05-26 12:56:55 -04:00
Allen Byrne
d809de2ebe Note HDFFV-8611 change 2017-05-26 11:16:20 -05:00
Dana Robinson
cf80aac401 Merge pull request #538 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:may_dev_warnings to develop
* commit '57f0a296c0b727e3d86cea312ba46efc98d76227':
  Minor warning fix.
  More minor warning fixes.
  Minor warning fixes in the tools.
  Minor type fixes to h5watch.
  A few more warnings fixed.
  Fixed additional minor warnings.
  Fixed many minor warnings.
2017-05-26 10:43:56 -05:00
Dana Robinson
d5f570acba Merge pull request #540 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:gcc_flag_cull to develop
* commit '35aec6ab2ca6018a6f5babc943d29957d6595f67':
  Updated the gnu-flags config file to remove gcc 3.x and 4.0 configurations as well as other minor rework and cleanup.
2017-05-26 10:34:18 -05:00
Allen Byrne
19a61e8e85 Merge pull request #541 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit 'db2da9f4b4b582d644d4b2e976040fce4dd1d665':
  Reduce warnings
2017-05-26 09:06:11 -05:00
Allen Byrne
db2da9f4b4 Reduce warnings 2017-05-25 15:57:18 -05:00
Dana Robinson
35aec6ab2c Merge branch 'develop' into gcc_flag_cull 2017-05-25 16:07:36 -04:00
Frank Willmore
53c5b41ec2 Merge pull request #534 in HDFFV/hdf5 from ~FRANK.WILLMORE/hdf5:fix-set-mpi-err-handler to develop
* commit '1ee90786196c10c2c616a9fb4b8b1f92ebefa1f2':
  updated MPI error handling call for MPICH2 standard
  cleanup
  enabled MPI error handling
  added test file
2017-05-25 13:30:54 -05:00
Dana Robinson
57f0a296c0 Minor warning fix. 2017-05-25 10:25:30 -04:00
Dana Robinson
1b74c5ca95 More minor warning fixes. 2017-05-25 10:11:26 -04:00
Dana Robinson
291b107d4d Minor warning fixes in the tools. 2017-05-25 09:47:20 -04:00
Dana Robinson
a33859d677 Minor type fixes to h5watch. 2017-05-25 09:24:24 -04:00
Dana Robinson
65e2e8f87c A few more warnings fixed. 2017-05-25 09:06:49 -04:00
Dana Robinson
18ae45027c Fixed additional minor warnings. 2017-05-25 08:42:18 -04:00
Dana Robinson
946fd98b8d Fixed many minor warnings. 2017-05-25 06:45:53 -04:00
Dana Robinson
23dfa24439 Merge pull request #535 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:h5i_object_verify to develop
* commit '8807f918b9b00916efa822dda0301d3aa9debd80':
  Added missing casts for the return value of H5I_object_verify().
2017-05-24 15:43:57 -05:00
Dana Robinson
8807f918b9 Added missing casts for the return value of H5I_object_verify(). 2017-05-24 16:13:12 -04:00