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982 Commits

Author SHA1 Message Date
Vailin Choi
e6bc326ec0 Fix for HDFFV-10180 Performance issues with H5Oget_info. 2018-04-24 15:10:13 -05:00
Allen Byrne
6c82c49dd5 TRILABS-20 set a compiler name on all project commands 2018-04-20 10:11:55 -05:00
Allen Byrne
46f2a2a432 TRILABS-19 Initial conversion of include_directories to targets 2018-04-17 15:57:58 -05:00
Allen Byrne
db3d744f25 HDFFV-10444 fix soversion numbers for libraries 2018-04-10 08:55:17 -05:00
Allen Byrne
24c62ba7fe Change CMake min to 3.10 2018-03-09 12:32:06 -06:00
Allen Byrne
b36bad53d9 Inc CMake min, Add new tests, rework test CMake files 2018-02-27 12:57:07 -06:00
Allen Byrne
a77a08b02f HDFFV-10384 Add optional arg to enable-error-stack 2018-02-14 16:14:48 -06:00
Allen Byrne
f0b0c35afb HDFFV-10396 Eliminate overuse of h5tools_simple_prefix function 2018-01-25 09:58:24 -06:00
Allen Byrne
a5789f6c9a HDFFV-8745 fix minor defects 2018-01-09 16:26:25 -06:00
Allen Byrne
f8e84c5509 HDFFV-8745 cleanup vl resource usage 2018-01-02 16:25:03 -06:00
Allen Byrne
5f4676f3c8 HDFFV-8745 - fix implementation of 8625 2018-01-02 14:39:45 -06:00
Allen Byrne
732074d47e Add library INTERFACE and MPI to tools 2017-12-28 16:30:51 -06:00
Allen Byrne
075a32fa0c Fix typos 2017-10-24 11:03:09 -05:00
Allen Byrne
8e2cedd066 HDFFV-10297 Cleanup, Initialize variables 2017-10-23 09:26:15 -05:00
Allen Byrne
8e30e7eb19 Avoid double free 2017-10-19 16:51:43 -05:00
Allen Byrne
afeaceef5f Windows had issues - revert code changes for get_option 2017-10-19 12:45:17 -05:00
Allen Byrne
cf3342f8fc Fix tools error handling and valgrind issues 2017-10-18 14:03:27 -05:00
Allen Byrne
78a5870680 Fix error handling issues 2017-10-17 16:13:12 -05:00
Allen Byrne
2cbdf46cb9 HDFFV-10297 add h5copy test and fix h5diff errors 2017-10-16 17:26:23 -05:00
Allen Byrne
e0bbff9d46 Fix VS2012 declaration error 2017-10-16 10:56:54 -05:00
Allen Byrne
448217e7e3 HDFFV-10297 Fix compiler compaliants 2017-10-16 09:19:41 -05:00
Allen Byrne
d5c073d406 HDFFV-10296 Update tools lib to use the error handling macros. 2017-10-13 16:34:01 -05:00
Allen Byrne
2f636b5d4a HDFFV-10297 fix vl buffer error 2017-10-10 10:28:53 -05:00
Allen Byrne
c577a5e995 HDFFV-10297 update calls to H5Zfilter_avail 2017-10-09 17:00:15 -05:00
Allen Byrne
daddf169b0 HDFFV-10297 - Fix test errors - five remaining 2017-10-09 12:59:28 -05:00
Allen Byrne
68a9844991 VS2012 and earlier cannot have execute stmnts before declare 2017-10-03 12:34:54 -05:00
Allen Byrne
38e2f0e784 Update error handling to support ARGS and tools stack 2017-10-02 09:53:54 -05:00
Quincey Koziol
8880ec672e Style cleanups and misc. bugfixes discovered during full SWMR development. 2017-09-23 11:17:47 -05:00
Allen Byrne
33812aee4c Fix merge typos 2017-09-11 12:44:00 -05:00
Allen Byrne
77313a1d39 HDFFV-9774 Fix code merge 2017-09-08 16:52:00 -05:00
Allen Byrne
89f65fc97e HDFFV-9774 Add enable-error-stack argument to h5diff 2017-08-31 15:58:37 -05:00
Allen Byrne
b82ba32275 HDFFV-10282 refactor out assert calls in tools 2017-08-23 16:12:40 -05:00
Allen Byrne
164eee91cf HDFFV-10188 - Check for empty string first 2017-08-16 15:01:29 -05:00
Allen Byrne
e790a0b42d HDFFV-10246 Add check for string not null before use 2017-07-25 15:15:20 -05:00
Dana Robinson
ffc9b1d917 Stripped C standard library headers from tools test code. 2017-07-19 10:46:27 -05:00
Dana Robinson
ee7816bbfb Stripped C standard library headers (and a couple of macros) 
from the tools code. This is all handled in H5private.h, which
should be included in all tools source files.
 2017-07-17 13:24:01 -05:00
Allen Byrne
14e52dcfa9 Set default of var to NATIVE 2017-06-20 16:09:32 -05:00
Dana Robinson
291b107d4d Minor warning fixes in the tools. 2017-05-25 09:47:20 -04:00
Dana Robinson
946fd98b8d Fixed many minor warnings. 2017-05-25 06:45:53 -04:00
Allen Byrne
60cfdf138c Remove obsolete function 2017-05-22 13:24:53 -05:00
Allen Byrne
cdcef539a3 HDFFV-8611 change h5repack to save the root group creation order 
Added test and new arguments to control the the input file parsing.
 2017-05-22 13:10:40 -05:00
Allen Byrne
973aebe25f Add debug trace commands 2017-05-19 11:35:07 -05:00
Allen Byrne
71c223c082 Move execeutable command after declaration 2017-05-17 13:09:13 -05:00
Allen Byrne
3ee87f72ad HDFFV-9055 Handle H5T_ARRAY types 
Create variables just for diff_array function
Whitespace updates
 2017-05-16 15:58:17 -05:00
Allen Byrne
4f0b92bdd5 HDFFV-10128 Fixed string length with no null fixed 2017-05-16 09:28:49 -05:00
Allen Byrne
56c3ec9820 HDFFV-10128 add test to check null term 
Test is another dataset
 2017-05-15 12:33:58 -05:00
Allen Byrne
7078993d63 HDFFV-10128 Fix null term strings 2017-05-12 14:40:39 -05:00
Allen Byrne
7dc0c79c54 HDFFV-10186 - h5tools_str_append is not printf 2017-05-10 12:20:15 -05:00
Allen Byrne
dd45c3694f HDFFV-10186 braces formatting 2017-05-10 11:09:55 -05:00
Allen Byrne
445c805a4c HDFFV-10186 Add endianess to bitfield and fix tests 2017-05-10 10:59:13 -05:00
Allen Byrne
e4e261173f HDFFV-10186 more whitespace formatting 2017-05-10 10:12:19 -05:00
Allen Byrne
4f36f613a6 HDFFV-10186 Whitespace change 
Mostly tabs to spaces
Remove Modifications comments
 2017-05-09 16:52:05 -05:00
Allen Byrne
5263bc9029 HDFFV-10186 Whitespace changes 
Mostly replacing tabs with spaces
Removed empty mod sections
 2017-05-09 10:41:00 -05:00
Larry Knox
89fbe00dec Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to hdf5_1_10 
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
  Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
  Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
  Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
  Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
 2017-04-25 16:05:36 -05:00
Allen Byrne
9e75847d67 HDFFV-10128 fix string compare and add tests 2017-03-03 14:47:59 -06:00
Quincey Koziol
101fa7af8e Cleanups and normalizations against incoming page_buffering changes. 2017-02-19 18:28:52 -08:00
Allen Byrne
d1292691c4 HDFFV-9875 enable static pdb and cleanup exports 2017-02-03 12:41:30 -06:00
Allen Byrne
177c050891 HDFFV-9875 Fix target exports and add static tools pdb files 2017-02-02 12:09:10 -06:00
Allen Byrne
be260bbf75 Add goto error for dataset read failure. Fixed comments 2017-01-17 09:55:15 -06:00
Allen Byrne
e1bcae8a6a Update cmake min version and cmake command convention 2017-01-10 17:10:03 -06:00
Quincey Koziol
57afb68e46 Bring SWMR-related tools changes from revise_chunks to develop. 2016-12-11 11:25:08 -08:00
Dana Robinson
122819fec3 Merge pull request #48 in HDFFV/hdf5 from HDFFV-9407-h5dump-fails-to-print-full-precision to develop 
Merged Kimmy's fix (still needs a test).

* commit 'f76c3b56e1ccf81b16225fa6935adb45ac6d2f38':
  fix the issue of h5dump fails to print full precision
 2016-12-07 16:17:45 -06:00
Quincey Koziol
bb6cb6adb0 Code style and warning cleanups, from revise_chunks branch. 2016-11-06 12:08:19 -08:00
Allen Byrne
3ee36553b9 Add support for namespace and add tools to binaries config 2016-10-14 11:22:22 -05:00
kmu
f76c3b56e1 fix the issue of h5dump fails to print full precision 2016-09-27 14:04:19 -05:00
Quincey Koziol
f40381b0ea [svn-r30285] Description: 
More warning cleanups, bringing the build down to 25 unique types of
warnings, with 550 warnings in 122 files (down from 28, 770, and 134).

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial & parallel
    (h5committest forthcoming)
 2016-08-13 04:23:53 -05:00
Allen Byrne
1494413413 [svn-r30236] HDFFV-9928: remove duplicate and unconditional includes in h5diff_array. 
Also format function block in h5diff_attr to eliminate excessive whitespace
 2016-08-01 12:26:41 -05:00
Quincey Koziol
bb19817c9f [svn-r30189] Description: 
Clean up more warnings: drop the warning count from ~1310 down to ~940,
with only 31 types of warnings in 148 files (down from 38 types in 167 files).

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial & parallel
    (h5committest forthcoming)
 2016-07-17 19:18:42 -05:00
Quincey Koziol
83724bd787 [svn-r30113] Description: 
Clean up warnings (from 2774 -> 1560, with my standard debug build)

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
 2016-06-28 16:53:48 -05:00
Quincey Koziol
d3396a7953 [svn-r30075] Description: 
Bring object/dataset/group/named datatype features from revise_chunks
branch to trunk.  Also CMake support for h5format_convert and a bunch of
misc. cleanups.

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
 2016-06-14 18:07:03 -05:00
Allen Byrne
a5b595e020 [svn-r29889] HDFFV-9775: Add enable-error-stack to tools lib and refactor h5repack error handling. 2016-05-04 13:15:57 -05:00
Allen Byrne
3764d69e9e [svn-r29885] Fix memory leak when one dataset is vlen. 2016-05-04 11:39:28 -05:00
Allen Byrne
74f3326a67 [svn-r29862] Convert source list names from *_SRCS to *_SOURCES. 
Add/convert most tools to use new HDF5_TOOLS_DIR instead of HDF5_TOOLS_SRC_DIR CMake VAR.
 2016-05-04 10:06:05 -05:00
Allen Byrne
7fe0324fc4 [svn-r29680] HDFFV-1956: h5diff will warn if a dataset is virtual instead of failing. h5diff does not consider the layout type when comparing datasets. 
SKIP h5repack VDS tests until h5repack is fixed.
 2016-04-11 08:45:33 -05:00
Larry Knox
921b68afa7 [svn-r29678] Revert r29672 changes to h5diff. 
Tested h5committest.new
 2016-04-09 13:48:43 -05:00
Allen Byrne
1a5ee65d50 [svn-r29672] HDFFV-1956: h5diff will warn if a dataset is virtual instead of failing. h5diff does not consider the layout type when comparing datasets. 2016-04-08 12:43:59 -05:00
Dana Robinson
5a9a9e8f0e [svn-r29534] Normalization w/ revise_chunks in preparation for big merge. 
tools directory

Also fixes a minor Java test output error.

Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1
           autotools serial w/ Java, Fortran, & C++
 2016-03-23 12:42:06 -05:00
Allen Byrne
40cdbe0b8d [svn-r29274] HDFFV-9698: fix subsetting issues with h5dump 2016-03-04 15:41:12 -05:00
Allen Byrne
d0444d4f2b [svn-r29261] HDFFV-9241: Print fill value as "DEFAULT" instead of value 0 2016-03-03 10:27:48 -05:00
Allen Byrne
f0a7f5978e [svn-r29257] HDFFV-9705: h5dump should not print filters or allocation time info for VDS files 2016-03-03 08:56:44 -05:00
Allen Byrne
8538eedde3 [svn-r29234] Fix H5 LIB OPTIONS macro for correct ARGN support 2016-02-29 16:24:31 -05:00
Allen Byrne
a1617b7cdb [svn-r29222] HDFFV-9570: Fix segfault when optional args are last option on command line. 
Tested: java_merge DT
 2016-02-28 12:58:37 -05:00
Allen Byrne
f7689087de [svn-r29186] HDFFV-9654: add VDS options to h5dump 
includes new data files
 2016-02-23 15:23:46 -05:00
Dana Robinson
7511d8b469 [svn-r29179] Revert of 29177 which breaks the autotools build. 
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
           autotools serial
 2016-02-22 15:32:01 -05:00
Allen Byrne
910d420409 [svn-r29177] HDFFV-9654: add VDS options to h5dump 2016-02-22 11:57:07 -05:00
Larry Knox
b3426914a8 [svn-r28669] Changes to correct errors found with -ansi flag. 
h5tools_dump.c
    Removed 3 lines commented out with //.
h5_vds-percival-unlim.c
    Changed C++-style comment to C-style comment.

Tested with h5committest.new.
 2015-12-15 15:52:12 -05:00
Quincey Koziol
cd49e8a2ab [svn-r28025] Description: 
Switch 'int' flag variables to booleans.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & paralel
    (too minor for h5committest)
 2015-10-10 21:42:20 -05:00
Quincey Koziol
d3c6b4ad72 [svn-r27848] Description: 
Clean up warnings and some normalization against trunk.

Tested:
    McaOSX/64 10.10.5 (amazon) w/serial & parallel
    (h5committest not required on this branch)
 2015-09-21 19:21:18 -05:00
Quincey Koziol
0695d6366a [svn-r27835] Description: 
Sync w/trunk.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & parallel
    (h5committest not required on this branch)
 2015-09-20 21:18:45 -05:00
Dana Robinson
d90e4acfa7 [svn-r27801] Minor warning fixes in the tools. 
Tested on: jam (too minor for h5committest)
 2015-09-16 10:23:16 -05:00
Dana Robinson
59aa015d9f [svn-r27638] Merged r27500-27631 from trunk. 2015-08-31 23:36:17 -05:00
Quincey Koziol
db8e289abe [svn-r27632] Description: 
Revert changes to pass file pointer to selection serialize/deserialize
routines.  Also patch back in some changes that were merged out in the
previous merge w/trunk.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial
    (h5committest not required on this branch)
 2015-08-31 16:58:15 -05:00
Quincey Koziol
2c91cbecc6 [svn-r27630] Description: 
Bring in changes from the trunk, through r27628.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial
    (h5committest not required on this branch)
 2015-08-31 15:14:57 -05:00
Dana Robinson
c226e58005 [svn-r27626] Various minor warning fixes before major SWMR and VDS merges. 
gcc 4.9.2 was used to create the warning list

- implicit casts
- shadowed variables
- various enum issues
- other minor fixes (comments, unused macros, etc.)

Tested on: h5committest
 2015-08-31 14:04:23 -05:00
Scot Breitenfeld
e6f9fc5f7f [svn-r27625] Added preprocessor commands for PGI compiler. 
tested: h5committest
 2015-08-31 13:49:17 -05:00
Neil Fortner
c365b9a59f [svn-r27593] Merge revisions 27453 through 27592 from trunk to vds branch. 
Tested: ummon
 2015-08-27 12:06:54 -05:00
Dana Robinson
2e6100fb23 [svn-r27572] Removed VMS-specific code from the library. 
The only remaining code consists of a few floating-point tests
that rely on pre-generated and checked-in VMS files. These have
been left alone, even though they will not be possible to
recreate, since testing VMS float behavior is still important.

Tested on: h5committest
 2015-08-24 15:19:39 -05:00
Scot Breitenfeld
d06fee7bd2 [svn-r27517] Removed all perl scripts from configure. 
Tested: h5committest
 2015-08-17 16:12:03 -05:00
Dana Robinson
c27d180848 [svn-r27507] Merge of r27237-27500 from the trunk. 
Tested w/ h5committest

NOTES: - The manifest may still be messed up.
       - Cmake fails since the dual binary work needs to be merged with
         this repo's CMake externals.
 2015-08-14 14:58:54 -05:00
Scot Breitenfeld
caf0e7692a [svn-r27493] Trying again to merge the F2003_v1.10 branch to the trunk. 
Tested: h5committest --PASSED--
 2015-08-11 09:35:30 -05:00
Scot Breitenfeld
3b4696ccd1 [svn-r27489] reverted merge of branch 2015-08-10 20:22:33 -05:00
Scot Breitenfeld
a9bef45c75 [svn-r27470] svn merge -r27425:27460 https://svn.hdfgroup.uiuc.edu/hdf5/trunk 2015-08-05 16:35:30 -05:00
Allen Byrne
9e2434625d [svn-r27469] Merge from trunk with dual-binary CMake code. 
Tested: local linux with CMake
 2015-08-05 16:01:07 -05:00
Neil Fortner
5065c139c7 [svn-r27397] Merge revisions 27255 through 27393 from trunk to vds branch. 
Tested: ummon
 2015-07-15 15:33:50 -05:00
Scot Breitenfeld
2c897f41c0 [svn-r27378] svn merge -r27326:27377 https://svn.hdfgroup.uiuc.edu/hdf5/trunk 2015-07-14 10:34:45 -05:00
Allen Byrne
8bbe712961 [svn-r27364] Add Mac Framework support 2015-07-09 11:56:16 -05:00
Scot Breitenfeld
985e8d02a4 [svn-r27327] svn merge -r27208:27326 https://svn.hdfgroup.uiuc.edu/hdf5/trunk 2015-07-02 14:12:03 -05:00
Allen Byrne
48e1bbb0f8 [svn-r27252] Fix whitespace 2015-06-19 10:57:38 -05:00
Allen Byrne
7fdb38eb6f [svn-r27239] Add function prototype for local function 2015-06-18 08:52:52 -05:00
Allen Byrne
cf7c5123cb [svn-r27238] Add function prototype for local function 2015-06-18 08:52:35 -05:00
Dana Robinson
fb27787c2a [svn-r27222] Merge of r27035-27221 from the trunk. 
Tested on 64-bit linux VM:
    Serial: C++ and Fortran 2003
    Parallel: Fortran
 2015-06-17 06:48:34 -05:00
Scot Breitenfeld
85bcb77904 [svn-r27221] Reworked Fortran autools REAL KIND detection. 2015-06-16 16:47:00 -05:00
Allen Byrne
78e128c544 [svn-r27195] Add h5dump cmake tests and files. 
Add tools gen cmake files
move testfiles for pbits to subdir as well as vds

Tested: local linux
 2015-06-12 16:29:20 -05:00
Dana Robinson
aa4e3e3985 [svn-r27191] Merged r26781 to r27185 from trunk 
Tested on: 64-bit Ubuntu Linux VM w/ gcc 4.8.2
    (C++ and Fortran 2003 also tested)
 2015-06-11 14:18:52 -05:00
Scot Breitenfeld
6c4e3759f5 [svn-r27187] svn merge -r27135:27186 https://svn.hdfgroup.uiuc.edu/hdf5/trunk 2015-06-10 14:23:09 -05:00
Scot Breitenfeld
f2d14c76b8 [svn-r27186] added fix for jam with promoted reals and integers 2015-06-10 14:15:08 -05:00
Mohamad Chaarawi
b9f2a18b5a [svn-r27185] fix more instances where both mpi is_initialized and is_finalized need to be checked before making any MPI calls. 
tested with h5committest.
 2015-06-10 12:57:32 -05:00
Scot Breitenfeld
62401ac7c6 [svn-r27167] more DT fixes 2015-06-09 12:05:09 -05:00
Scot Breitenfeld
32703c9fc5 [svn-r27164] various bug fixes for DT 2015-06-08 16:13:15 -05:00
Scot Breitenfeld
8641814c4e [svn-r27154] fixed issue with mis-matching long double between Fortran and C 2015-06-05 17:17:13 -05:00
Scot Breitenfeld
043173a689 [svn-r27151] fixed __float128 errors 2015-06-04 15:26:02 -05:00
Scot Breitenfeld
4d500d4902 [svn-r27140] fixed interger*16 support 2015-06-03 09:13:58 -05:00
Scot Breitenfeld
f486fe1a49 [svn-r27137] svn merge -r27115:27135 https://svn.hdfgroup.uiuc.edu/hdf5/trunk 2015-06-02 09:46:51 -05:00
Mohamad Chaarawi
fc45d5fcb0 [svn-r27133] - Add a new attribute function characterstic for format: 
* H5_ATTR_FORMAT(X,Y,Z)  __attribute__((format(X, Y, Z)))
- Rename UNUSED attribute characterstic to H5_ATTR_UNUSED.
- Rename NORETURN attribute characterstic to H5_ATTR_NORETURN

tested with h5committest.
 2015-06-01 14:38:09 -05:00
Scot Breitenfeld
52e5579fba [svn-r27122] removed dependency on generatored fortran source code 2015-05-28 11:53:15 -05:00
Scot Breitenfeld
b1cf507c6d [svn-r27116] svn merge -r26937:27115 https://svn.hdfgroup.uiuc.edu/hdf5/trunk 2015-05-27 17:12:43 -05:00
Scot Breitenfeld
244784ab2c [svn-r27115] Moved testing KINDs and SIZEOFs to configure. 2015-05-27 17:07:18 -05:00
Mohamad Chaarawi
cea93c4a37 [svn-r27111] move undef of __attribute__ back to private and remove its usage from public routines. 2015-05-26 09:23:27 -05:00
Dana Robinson
984ecb72c2 [svn-r27038] Merge of r26393-27031 from the trunk. 
Tested on 64-bit linux VM w/ C++ and Fortran 2003
 2015-05-07 16:05:14 -05:00
Scot Breitenfeld
5e6d18e5be [svn-r26869] removed the --enable-fortran2003 option, it is now just --enable-fortran 2015-04-21 13:33:25 -05:00
Scot Breitenfeld
0cc9b0c79f [svn-r26825] Added include for preprocessing fortran files with configure definitions 2015-04-16 13:36:34 -05:00
Allen Byrne
11efaf4ff7 [svn-r26798] Fix other storage layout whitespace 2015-04-13 15:47:03 -05:00
Allen Byrne
26e709edc6 [svn-r26794] Fix formatting for selection. Irregular reuses blocks and points for datasets however indentation after line breaks are an issue. 2015-04-13 15:15:00 -05:00
Neil Fortner
6a27582a44 [svn-r26781] Merge revisions 26305 through 26780 from trunk to vds branch. 
Tested: ummon
 2015-04-10 18:00:48 -05:00
Larry Knox
3032f3adf3 [svn-r26711] Recommitting revisions 26669 and 26670, removing VPATH and redundant /usr/include and lib in fcompile and link flags checks, now that I have run reconfigure. 
Also changed paths to h5cc, etc. in scripts to run installed examples from relative paths to absolute paths.

Tested with h5committest.
 2015-04-02 16:07:53 -05:00
Allen Byrne
45577d5693 [svn-r26660] HDFFV-9131: autotols rework 
Remove CXX_CONDITIONAL
remove unneeded/obsolete sections.

h5commtitest
 2015-03-30 13:55:21 -05:00
Mohamad Chaarawi
01093ad350 [svn-r26649] squish warnings. 2015-03-30 10:12:49 -05:00
Quincey Koziol
6f75afd15e [svn-r26635] Description: 
Bring r26651 from autotools_rework branch to trunk:

    Remove the VSNPRINTF_WORKS macro, it's working around bugs in old SGI
& HP compilers.

Tested on:
    Linux/32 2.6.18 (jam) w/serial & parallel
    (Daily tested on branch for 2+ days)
 2015-03-27 19:37:08 -05:00
Allen Byrne
e270981617 [svn-r26611] Remove complete section of VIRTUAL output. 2015-03-27 09:23:24 -05:00
Allen Byrne
451a91e53b [svn-r26594] Merge macros and fortran changes from dual_binary feature. 
Tested: local linux
 2015-03-25 17:08:46 -05:00
Elena Pourmal
1180e6f96d [svn-r26570] Commented lineis that print extra "VIRTUAL" keyword and blank lines for demo on 3/25/2015. Allen will need to review it. 2015-03-24 23:08:59 -05:00
Elena Pourmal
dd0e7540b6 [svn-r26567] h5dump was nopt displaying source selection correctly due to a type; fixed. 2015-03-24 18:31:00 -05:00
Quincey Koziol
61b5fa8e2d [svn-r26551] Description: 
Remove the VSNPRINTF_WORKS macro, it's working around bugs in old SGI
& HP compilers.

Tested on:
    MacOSX/64 10.10.2 (amazon) w/serial & parallel
    (h5committest not required on this branch)
 2015-03-23 17:16:28 -05:00
Jerome Soumagne
1cd7c16a9d [svn-r26509] Run reconfigure after merges from autotools_rework branch. 2015-03-20 14:15:51 -05:00
Allen Byrne
66a9948e65 [svn-r26442] Removed blank line and fixed ALL output 2015-03-12 17:29:59 -05:00
Allen Byrne
4edde43ae5 [svn-r26440] Added new structure, removed ";", used static hyperslab arrays. 2015-03-12 16:22:48 -05:00
Dana Robinson
7659506fa8 [svn-r26438] Fixed some double promotion warnings from gcc 4.9.2. Most were in 
format strings.

Tested on: h5committest
 2015-03-11 17:51:14 -05:00
Allen Byrne
92d7b82d61 [svn-r26418] Fix initial indent for selection_all 2015-03-10 15:53:57 -05:00
Dana Robinson
ce19753d87 [svn-r26396] Merge of r26349-26392 from the trunk. 
Tested on: h5committest
 2015-03-09 03:47:16 -05:00
Mohamad Chaarawi
89ffc9f2d7 [svn-r26387] warning fixes from Feb27. 2015-03-06 14:53:23 -05:00
Allen Byrne
9cdf806eec [svn-r26383] Add MAPPING to VDS output 2015-03-06 12:53:56 -05:00
Allen Byrne
b3c3c8ea72 [svn-r26361] Added check for unlimited to count/block print selection 2015-03-04 14:14:50 -05:00
Allen Byrne
1aa5cd4fa5 [svn-r26353] Add VDS selection defines for ALL and NONE 2015-03-04 09:08:58 -05:00
Allen Byrne
f1c4d0ff3f [svn-r26352] Update h5dump to latest BNF - reg vs irreg hyperslabs. 2015-03-04 08:34:24 -05:00
Dana Robinson
5b294640c0 [svn-r26350] Merge of r26273-26348 from the trunk. 
Tested on: h5committest
 2015-03-03 19:27:40 -05:00
Dana Robinson
d8e3d8e908 [svn-r26333] Eliminates gcc warnings due to -Wunsuffixed-float-constants. 
- Adds 'F' suffixes for most float constants.

- A few constants MUST be of type double. These now receive the long
  double L suffix and are then cast to double. I do this via a new
  H5_DOUBLE() macro which was added to H5private.h.

Fixes: HDFFV-9148

Tested on: h5committest
 2015-03-01 13:48:54 -05:00
Dana Robinson
7462a7ef1c [svn-r26329] Merge of r26069, r26070, and r26072 from the features/autotools_rework 
branch.

Removed the configure option that allows selective disabling of individual
internal filters (fletcher32, shuffle, etc.).

This feature mucked up the code with a lot of #ifdefs, saved very little space,
and was not scalable to a general scheme for library size reduction. We've
decided to remove the feature while we investigate a more general scheme for
decreasing the library size.

Part of: HDFFV-9086

Tested on: h5committest
 2015-02-27 07:50:38 -05:00
Allen Byrne
45df14138d [svn-r26318] Update virtual layout to latest changes 2015-02-26 10:59:15 -05:00
Neil Fortner
952d00e7f0 [svn-r26306] Merge r26296 through 26304 from trunk to vds branch. 
It should no longer be necessary to use --enable-using-memchecker
make check fails due to an issue with h5ls apparently unrelated to the merge

Tested: ummon
 2015-02-25 17:06:18 -05:00
Allen Byrne
aad4250bd6 [svn-r26305] convert dump_dcpl to use switch statement 
Add default case
refactor out start ctx and end ctx
Tested: local linux
 2015-02-25 15:20:31 -05:00
Mohamad Chaarawi
c4044e0c85 [svn-r26303] remove files with .clog2 extension generated by MPE when doing make clean. 2015-02-25 13:48:31 -05:00
Elena Pourmal
99a3f4d8d4 [svn-r26297] Changed example and h5dump according to suggestions at today's code review VDS-176. 
BNF has been updated too. Now h5dump displays VDS like this:

HDF5 "vds.h5" {
GROUP "/" {
   DATASET "VDS" {
      DATATYPE  H5T_STD_I32LE
      DATASPACE  SIMPLE { ( 4, 6 ) / ( 4, 6 ) }
      STORAGE_LAYOUT {
         VIRTUAL {
             HYPERSLAB { (0,0)-(0,5) };
             a.h5;
             A;
             ALL;
             HYPERSLAB { (1,0)-(1,5) };
             b.h5;
             B;
             ALL;
             HYPERSLAB { (2,0)-(2,5) };
             c.h5;
             C;
             ALL;
            }
         }
      }
      FILTERS {
.......
I just commented the code with "EIP" and didn't delete to simplify the review with Allen tomorrow.

Tested on jam
 2015-02-24 23:19:41 -05:00
Neil Fortner
2ca5b16a9f [svn-r26296] Merge r26050 through 26295 from trunk to vds branch. 
Tested: ummon
 2015-02-24 16:53:56 -05:00
Allen Byrne
3f72ec11cd [svn-r26295] add space before end bracket of selection 2015-02-24 15:39:08 -05:00
Allen Byrne
80e77e7d77 [svn-r26290] Add H5S prefix to selection name 2015-02-23 16:52:03 -05:00
Allen Byrne
bc888966a9 [svn-r26288] remove extra set of brackets 2015-02-23 15:30:53 -05:00
Allen Byrne
b1251c915e [svn-r26287] Rename point and block str functions generically. 
Add info arg to print virtual selection function.
 2015-02-23 15:23:56 -05:00
Allen Byrne
a0ead57cad [svn-r26286] Print selection types - no values 2015-02-23 14:19:19 -05:00
Allen Byrne
cd9b96a887 [svn-r26285] add virtual mapping output blank selections but actual file and dataset names. 2015-02-23 13:41:02 -05:00
Allen Byrne
46074defaa [svn-r26284] Add VIRTUAL layout to h5dump - still need a tools testfile created 2015-02-23 12:07:40 -05:00
Dana Robinson
c07d803659 [svn-r26274] Merge of r26096 to r26271 from trunk. 
Tested on: jam - serial: C++/Fortran
                 parallel: Fortran
 2015-02-22 07:16:30 -05:00
Allen Byrne
73bb11dda3 [svn-r26208] Update cmake minimums 2015-02-18 11:56:22 -05:00
Scot Breitenfeld
b28b5fade9 [svn-r26188] Merged autotools fixes into the trunk: 
HDFFV-9089, HDFFV-9091, HDFFV-9092, HDFFV-9094, HDFFV-9095
 2015-02-16 12:17:49 -05:00
Mohamad Chaarawi
74fbb9e327 [svn-r26180] merge configure fixes for HDFFV-9068,9069,9096,9097,9135 from autotools_rework branch: 
- Remove Infering parallel compilers (C and Fortran) from configure.ac
- Remove restriction to build shared with parallel
- Cleanup parallel sections in configure.ac
- remove large file support checks
- MPE fixes.

tested with h5committest.
 2015-02-16 11:17:03 -05:00
Dana Robinson
e2240d544e [svn-r26097] Removed configure and Makefile.in files from version control. 
Developers will now have to run bin/reconfigure (deprecated, will be removed
soon) or autogen.sh after checking out code.

Part of: HDFFV-9120

Tested on: jam with Fortran and C++
 2015-02-02 02:50:25 -05:00
Dana Robinson
cd1d1d41df [svn-r26096] Merged r26024-26095 from trunk. 
Tested on: jam with Fortran and C++
 2015-02-02 01:46:40 -05:00
Dana Robinson
45aece2434 [svn-r26069] Removed the option to selectively disable internal filters like n-bit 
at compile time.

Fixes HDFFV-9086

Tested on: jam, both serial and parallel w/ fortran & C++
 2015-01-29 08:19:22 -05:00
Scot Breitenfeld
4d34a0c6ad [svn-r26051] Fix for HDFFV-9092 
Change AC_TRY_RUN TO AC_TRY_COMPILE

Changed all the instances of AC_TRY_RUN for the Fortran and C++ tests to use
AC_COMPILE_IFELSE and moved all the tests to new files in m4 directory:

aclocal_cxx.m4 (for C++ tests)
aclocal_fc.m4 (for Fortran tests)

tested: jam
 2015-01-27 12:17:09 -05:00
Allen Byrne
055348122d [svn-r26040] HDFFV-9018: Install pdb files to bin folder with dlls. 2015-01-26 15:23:19 -05:00
Allen Byrne
5da20c221e [svn-r25955] Added Perform and io_timer back into build. 
Tested: local linux cmake
 2015-01-05 16:52:26 -05:00
Albert Cheng
6a982a7690 [svn-r25954] HDFFV-9046: reorganize hdf5/perform, step 2 
Last changes had caused problems with Windows platform:
1. H5private.h in io_timer.h is not accessible in the distributed shared library of tools.
   Need to move it to io_timer.c.
2. debug_start_stop_time() would not be available outside of h5perf. Some favor of compiler
   does not like it.  Screened it out for now.
3. mere "extern" is not good enough for Windows shared library. Must mark them as DLL. Need to mark them as 
   "H5TOOLS_DLL".
4. STANDALONE mode is broken. Screened out the code for now.

Tested; h5committest.
 2015-01-05 16:47:34 -05:00
Allen Byrne
6b109315f5 [svn-r25951] HDFFV-9054: disable io_timer in tools lib and perform sub-folder due to SHARED compile issues and other issues. 2015-01-05 11:21:22 -05:00
Albert Cheng
fe1bf91042 [svn-r25946] Removed debug statments that use //. 
Tested: env CFLAGS=-ansi buildhdf5 in jam and parallel platypus.
 2015-01-03 23:51:03 -05:00
Albert Cheng
c803666ec2 [svn-r25940] HDFFV-9046: reorganize hdf5/perform, step 2 
Move timing measurement routines used by h5perf and h5perf_serial to tools/lib
so that they can be used by other tools too.

tools/lib/io_timer.c
tools/lib/io_timer.h
tools/perform/io_timer.c
tools/perform/io_timer.h
    renamed perform/io_timer.[ch] to lib/io_timer.[ch]

tools/lib/Makefile.am
tools/lib/Makefile.in
tools/lib/CMakeLists.txt
tools/perform/Makefile.in
tools/perform/Makefile.am
tools/perform/CMakeLists.txt
MANIFEST
    updated due to the move.

Tested; h5committest and jam (serial)
 2015-01-01 11:24:55 -05:00
Dana Robinson
81f7e6b1d3 [svn-r25755] Removed spurious casts in a few HDfree() statements. 
Discovered when I temporarily #defined HDfree() to a more complicated
function while investigating something. 

Tested on a local linux VM. This is a very minor change.
 2014-10-31 13:11:42 -05:00
Allen Byrne
5a4357e4fb [svn-r25570] UNDO:Added option to build tools static when building shared libraries. This will prevent 'dll' being appended to the tool name on windows. See HDFFV-8292. 
Windows DLL linkage problem because of defines needed.

Tested: local linux
 2014-09-03 14:04:18 -05:00
Allen Byrne
c23f3a7ea5 [svn-r25569] Added option to build tools static when building shared libraries. This will prevent 'dll' being appended to the tool name on windows. See HDFFV-8292. 
Tested: local linux
 2014-09-03 12:12:52 -05:00
Mohamad Chaarawi
88fb6b1374 [svn-r25531] remove use of C99 PRI that failed on windows in dtypes.c 
fix bugs where hid_t were assumed to be 32 bit ints or herr_t.
 2014-08-11 14:13:45 -05:00
Quincey Koziol
33ea1ada24 [svn-r25496] Description: 
Merge 64-bit ID changes from branch to trunk.  (Plus a few minor cleanups
that aren't on the branch)

Tested on:
    Mac OSX/64 10.9.4 (amazon) w/C++ & FORTRAN
    (h5committested on branch already for a week)
 2014-07-30 15:55:14 -05:00
Mohamad Chaarawi
06ef71a37f [svn-r25397] - remove configure checks for MPI_File_get_size and Big 
MPI_File_set_size as they are supported by most MPI implementations.
- fix bug in t_mpi.c (HDFFV-8856)
 2014-07-07 13:22:48 -05:00
Quincey Koziol
60f8a4100e [svn-r25215] Description: 
Bring changes from Coverity branch back to trunk:

r20914:
    Use HDstrncpy and HDstrncat! --gh

20915:
    Use HDstrncpy and HDstrncat! --gh

Tested on:
    Mac OSX/64 10.9.3 (amazon) w/gcc 4.9.0, C++, FORTRAN & parallel
    (too minor to require h5committest)
 2014-05-25 00:55:39 -05:00
Quincey Koziol
a613b70f93 [svn-r25197] Description: 
Bring changes from hdf5_1_8_coverity branch back to trunk:

r20878:
    Issue 76: Check if H5Tget_nmembers(type) fails and simply return(FALSE). Also move printf to after check.

r20880:
    Issue 192: Create ret_val var set to -1. Add out label for failures to jump to, return ret_val at bottom.

r20882:
    Fixes for coverity:
    1) bug #1679: remove dead code in test/mf.c
    2) bug #1680: remove dead code in tools/lib/h5diff_dset.c

r20883:
    Fix coverity issue 585

    Description:
    Changed variable "c" in processStrData in h5import.c to an int, to match fgetc
    return value, and removed call to feof, instead checking if c == EOF.

Tested on:
    MacOSX/64 10.9.3 (amazon) w/C++, FORTRAN & parallel
    (too minor to require h5committest)
 2014-05-16 22:22:51 -05:00
Allen Byrne
21474f8eee [svn-r25188] Implement change to cmake_ext_mod config folder 
Tested: local linux
 2014-05-14 14:50:28 -05:00
Allen Byrne
8f57e86ab9 [svn-r25185] update cmake command name case 2014-05-12 13:14:46 -05:00
Larry Knox
c6e3e68297 [svn-r25117] Removed LT_ADD_LIBHDF5_DEPENDENCY configure conditional to roll back fix for removing rpaths from l 
ib files.  The fix also removed dependencies on libhdf5, etc. when the --disable-sharedlib-rpath co
nfigure option was invoked.
Added instead configure variable hardcode_into_lib=no.  This removes rpath from lib files on Linux
and solaris machines.

Tested with h5committest on jam, koala, ostrich and platypus (cmake), and with configure option --disable-sharedlib-rpath on emu, platypus and quail.
 2014-04-25 16:59:53 -05:00
Albert Cheng
3dc1e6dd38 [svn-r25081] Bug HDFFV-8625, HDFFV-8639, HDFFV-8745: 
h5diff issues "unable to read attribute" error message when comparing two files

Description:
    h5diff did not handle attributes of variable length strings correctly. It created the wrong memory type if one but not both compared attributes are of the variable strings type. It ended in H5Aread() failure.

Solution:
    We decided to treat the case when one type is variable length string and the other is not as incomparable. That bypassed the above error.  We still need to figure out the proper way, if possible, to compare variable string with non-variable string types.

Tested: h5committested plus tested in Swallow (OS X 10.8).
 2014-04-22 17:25:51 -05:00
Albert Cheng
9734210966 [svn-r24999] Bugfix: HDFFV-8639 
h5diff segfaults with user's files

Solution:
Added a variable to indicate if real data are in the buffer and will call H5Dvlen_reclaim()
only when real data are in the buffer.

Tested: with the user provided data files and no more segmentaion fault.
Also h5committ tested.
 2014-04-09 06:23:16 -05:00
Dana Robinson
d01ee66666 [svn-r24937] Adds an H5free_memory() function to the library for use with 
functions that return library-allocated memory. The test and tool
code were modified to use this new function where it's appropriate.

Fixes HDFFV-7710, HDFFV-8519, and HDFFV-8551

Tested on:
    64-bit Windows 7 w/ VS2012
    32-bit LE linux w/ parallel and fortran (jam)
    32-bit LE linux w/ fortran and C++ (jam)
 2014-03-31 18:35:09 -05:00
Allen Byrne
c6fe8c70b2 [svn-r24932] HDFFV-8290: Remove unnecessary $(srcdir) and use AM_CPPFLAGS instead of INCLUDES. Update automake to 1.14.1 
h5committest
 2014-03-31 12:07:05 -05:00
Allen Byrne
425408b5a1 [svn-r24895] Add INTERFACE properties to libs 2014-03-25 13:25:53 -05:00