Commit Graph

18778 Commits

Author SHA1 Message Date
Quincey Koziol
140f72b748 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into stackable_vol 2018-11-07 15:20:28 -06:00
Allen Byrne
40338b9e40 Merge pull request #1298 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '4616c1e863ab756d22af696672ba9bc2fe0eea25':
  Add custom target to force wait on generated file
  TRILAB-81 fix typo
  TRILAB-82 fixed errors found in review
  Update windows test machine info
  TRILAB-81 Output error if filename length is greater then 255
  TRILAB-81 check for func success before using value
  TRILAB-81 Coverity fix
  Move options to root CMakeLists.txt
  TRILAB-34 fix required through testing
  TRILAB-34 add batch option (also patch2 from 10633)
  TRILAB-81 coverity fixes
2018-11-07 10:02:49 -06:00
Allen Byrne
4616c1e863 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '1652a60fcbe9894d7c34a778fb24dce1979fb9a9':
  HDFFV-10605 Only test plugins if SHARED enabled
  Correct platforms
  Correct extlib depends
  Commit version changes for additional files for 1.11.3 snapshot release.
2018-11-06 16:01:35 -06:00
Allen Byrne
1652a60fcb Merge pull request #1319 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
* commit '81cb24ac1db0f4936b19067cdb7fa4e14e0d00db':
  Commit version changes for additional files for 1.11.3 snapshot release.
2018-11-06 16:01:16 -06:00
Allen Byrne
0f4f4cf5dd Merge pull request #1320 in HDFFV/hdf5 from ~BYRN/hdf5_merge_adb:develop to develop
* commit '79903575e64e1e8f46ce27e6212d5d5939a8a900':
  HDFFV-10605 Only test plugins if SHARED enabled
  Correct platforms
  Correct extlib depends
2018-11-06 15:47:10 -06:00
Allen Byrne
79903575e6 HDFFV-10605 Only test plugins if SHARED enabled 2018-11-06 15:45:58 -06:00
Allen Byrne
c77d044dd0 Correct platforms 2018-11-06 15:30:15 -06:00
Allen Byrne
b9b89705c3 Correct extlib depends 2018-11-06 15:10:55 -06:00
Allen Byrne
7f5d91fa8f Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '9f299a6eeb91b8bc59196ccbb7067285b23e6085':
  TRILAB-36 add custom target on generated files
  Fix typo in whitespace area
2018-11-06 15:08:36 -06:00
Allen Byrne
9f299a6eeb Merge pull request #1318 in HDFFV/hdf5 from ~BYRN/hdf5_merge_adb:develop to develop
* commit '1bd3a2885865f4745209233ea84045a22e6dce9c':
  TRILAB-36 add custom target on generated files
  Fix typo in whitespace area
2018-11-06 15:07:37 -06:00
Larry Knox
81cb24ac1d Commit version changes for additional files for 1.11.3 snapshot release. 2018-11-06 10:56:36 -06:00
Quincey Koziol
ef9ffc630a Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into stackable_vol 2018-11-06 10:44:17 -06:00
Allen Byrne
1bd3a28858 TRILAB-36 add custom target on generated files 2018-11-06 09:35:11 -06:00
Allen Byrne
a6a46fb27f Add custom target to force wait on generated file 2018-11-06 09:32:34 -06:00
Allen Byrne
e753904d0b Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit 'e6545faa5699aae4d5dca23ed40e3080fa9dc72d':
  Update HDF5-Examples version to be included in CMake-* tar/zip files.
  Snapshot version 1.11 release 3.
2018-11-05 16:57:51 -06:00
Allen Byrne
05419b19fc Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit 'e6545faa5699aae4d5dca23ed40e3080fa9dc72d':
  Update HDF5-Examples version to be included in CMake-* tar/zip files.
  Snapshot version 1.11 release 3.
2018-11-05 16:57:39 -06:00
Larry Knox
e6545faa56 Merge pull request #1317 in HDFFV/hdf5 from ~HDFTEST/hdf5_hft:develop to develop
* commit 'be0d6b206aaa04f7d9cb406a71aeeb458ba67975':
  Update HDF5-Examples version to be included in CMake-* tar/zip files.
  Snapshot version 1.11 release 3.
2018-11-05 15:49:11 -06:00
hdftest
be0d6b206a Update HDF5-Examples version to be included in CMake-* tar/zip files. 2018-11-05 12:40:04 -06:00
hdftest
db48399bd8 Snapshot version 1.11 release 3. 2018-11-05 12:21:13 -06:00
Allen Byrne
550674d28a Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '20ad15a1a8e9008103fe7d30401408eaa2aff6e5':
  Fixed exit() to HDexit() in use_append_chunk.c and use_append_mchunks.c
  Fixed fprintf to HDfprintf in the following routines: 1) read_uc_file() in use_common.c 2) main() of use_append_chunk.c and use_append_mchunks.c
  Fix for HDFFV-10554 use_append_chunks in swmr use case test failure Fix the timing issue of the test by moving the open/close of the test file for the writer to use_append_chunk.c and use_append_mchunks.c.
2018-11-05 09:09:26 -06:00
Allen Byrne
9e0eb2fdca Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '20ad15a1a8e9008103fe7d30401408eaa2aff6e5':
  Fixed exit() to HDexit() in use_append_chunk.c and use_append_mchunks.c
  Fixed fprintf to HDfprintf in the following routines: 1) read_uc_file() in use_common.c 2) main() of use_append_chunk.c and use_append_mchunks.c
  Fix for HDFFV-10554 use_append_chunks in swmr use case test failure Fix the timing issue of the test by moving the open/close of the test file for the writer to use_append_chunk.c and use_append_mchunks.c.
2018-11-05 09:09:09 -06:00
Quincey Koziol
afd54bbe5c Remove most debugging shims & scaffolding. 2018-11-04 02:09:27 -06:00
Quincey Koziol
1daa7b830a Switch driver | plugin => connector. 2018-11-04 01:27:23 -05:00
Quincey Koziol
deb75622ca Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into stackable_vol 2018-11-04 00:25:36 -05:00
Quincey Koziol
df7cf2a9d3 Refactor, standardize, and revise the async request callbacks. 2018-11-04 00:05:08 -05:00
Songyu Lu
6fa26d7e49 HDFFV-10601 Issues with chunk cache hash value calcuation:
1. H5D__chunk_hash_val: When the number of chunks in the fastest changing dimension is larger than the number of slots in the hash table, H5D__chunk_hash_val abandons the normal hash value calculation algorithm and simply uses the scaled dimension.  This will cause chunks a selection that cuts across chunks in dimensions other than the fastest changing to all have the same hash value, and they will therefore always evict each other from the cache, having an obvious major performance impact. Eliminated the check  for the number of slots in this function and always use the full algorithm.

2. H5D__chunk_init: When the scaled dimensions (number of chunks in each dimension) are calculated in H5D__chunk_init, a simple divide ("/") operator is used with the dataset size in elements and the chunk size in elements. While this is fine when the dataset size is an exact multiple of the chunk size, in other cases, since "/" rounds down, it results in a scaled dimension one less than it should (it ignores the partial edge chunk). This has trickle down effects on hash value calculation that can cause excess hash value collisions and therefore performance issues. Changed the calculation to (((dataset_size - 1) / chunk_size) + 1).

Tested the build with Autotool and CMake.
2018-11-02 14:53:35 -05:00
Quincey Koziol
4806d29d9f Refactor and standardize named datatype VOL callbacks. 2018-11-01 17:02:27 -05:00
Vailin Choi
20ad15a1a8 Merge pull request #1314 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to develop
* commit '51076d40617aa6f0236809c2c919cc6921b3bbc1':
  Fixed exit() to HDexit() in use_append_chunk.c and use_append_mchunks.c
  Fixed fprintf to HDfprintf in the following routines: 1) read_uc_file() in use_common.c 2) main() of use_append_chunk.c and use_append_mchunks.c
  Fix for HDFFV-10554 use_append_chunks in swmr use case test failure Fix the timing issue of the test by moving the open/close of the test file for the writer to use_append_chunk.c and use_append_mchunks.c.
2018-11-01 16:12:07 -05:00
Vailin Choi
51076d4061 Fixed exit() to HDexit() in use_append_chunk.c and use_append_mchunks.c 2018-11-01 15:00:40 -05:00
Quincey Koziol
1b00d04080 Refactor and standardize object VOL callbacks. 2018-11-01 14:54:44 -05:00
Vailin Choi
4f62c084f1 Fixed fprintf to HDfprintf in the following routines:
1) read_uc_file() in use_common.c
2) main() of use_append_chunk.c and use_append_mchunks.c
2018-11-01 12:03:34 -05:00
Quincey Koziol
a5cc4e272b Refactor and standardize the link VOL callbacks. Also fix error stack for
testing.
2018-11-01 11:22:54 -05:00
Allen Byrne
2c266f2cb6 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '3fcc1e7929d99272cf3d29883de78b1ad544ea38':
  A trivial change to reformat a comment.  The purpose is simply to try out Git.
2018-11-01 08:40:53 -05:00
Allen Byrne
0e1c2d1c9e Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '3fcc1e7929d99272cf3d29883de78b1ad544ea38':
  A trivial change to reformat a comment.  The purpose is simply to try out Git.
2018-11-01 08:40:38 -05:00
Quincey Koziol
a39486a341 Refactor and standardize group VOL callbacks. 2018-10-31 19:17:37 -05:00
Quincey Koziol
ef7c458d73 Update for change in error stack when opening a dataset. 2018-10-31 18:41:19 -05:00
Quincey Koziol
d66d5e01c0 Refactor and standarize file object callbacks, including some fixes on the
dataset callbacks.
2018-10-31 18:18:45 -05:00
Ray Lu
3fcc1e7929 Merge pull request #1315 in HDFFV/hdf5 from ~SONGYULU/hdf5_ray:bugfix/ray_test to develop
* commit 'b72e926ed0c981d14d5219b32042c3d0b938d1e1':
  A trivial change to reformat a comment.  The purpose is simply to try out Git.
2018-10-31 10:43:22 -05:00
Songyu Lu
b72e926ed0 A trivial change to reformat a comment. The purpose is simply to try out Git. 2018-10-31 09:54:08 -05:00
Allen Byrne
3042976b65 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '99c1e577da3a2dd45fbfee748220986c42962921':
  Removed a couple of extraneous commas from VOL example.
  Cleaned up VOL example.
  Updated MANIFEST file.
  Fixed VOL example to use a platform-independent format specifier for size_t.
2018-10-31 08:49:58 -05:00
Allen Byrne
a5e33551d7 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '99c1e577da3a2dd45fbfee748220986c42962921':
  Removed a couple of extraneous commas from VOL example.
  Cleaned up VOL example.
  Updated MANIFEST file.
  Fixed VOL example to use a platform-independent format specifier for size_t.
2018-10-31 08:49:45 -05:00
Dana Robinson
99c1e577da Merge pull request #1313 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:vol_tweaks to develop
* commit 'ee12aff2ca89e92b99590f29096794a84c6bacdc':
  Removed a couple of extraneous commas from VOL example.
  Cleaned up VOL example.
  Updated MANIFEST file.
  Fixed VOL example to use a platform-independent format specifier for size_t.
2018-10-30 18:54:05 -05:00
Vailin Choi
d1d2cf776d Fix for HDFFV-10554 use_append_chunks in swmr use case test failure
Fix the timing issue of the test by moving the open/close of the test file for the writer to
use_append_chunk.c and use_append_mchunks.c.
2018-10-30 16:53:09 -05:00
Dana Robinson
ee12aff2ca Removed a couple of extraneous commas from VOL example. 2018-10-30 14:44:54 -07:00
Dana Robinson
7a5e632c0d Cleaned up VOL example. 2018-10-30 10:32:17 -07:00
Allen Byrne
98353c18bd Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '3145690c9590778b857def090489c6d890e42a5b':
  Add script to run tests with sbatch when not cross compiling. Add new files to MANIFEST.
2018-10-30 12:03:50 -05:00
Allen Byrne
b2147800a8 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '3145690c9590778b857def090489c6d890e42a5b':
  Add script to run tests with sbatch when not cross compiling. Add new files to MANIFEST.
2018-10-30 12:03:39 -05:00
Dana Robinson
ab9e964c3e Updated MANIFEST file. 2018-10-30 09:53:20 -07:00
Dana Robinson
12e929e1ec Fixed VOL example to use a platform-independent format
specifier for size_t.
2018-10-29 16:06:22 -07:00
Quincey Koziol
4c6d8d376c Remove erroneous call. 2018-10-29 17:26:33 -05:00