Commit Graph

3988 Commits

Author SHA1 Message Date
jhendersonHDF
34fcb9c5a4
Fix several spelling/grammar issues (#3621) 2023-10-03 09:01:28 -07:00
H. Joe Lee
4261552068
Fix Intel oneAPI icc warning (#3619) 2023-09-29 17:50:04 -07:00
Allen Byrne
1529ec0ab3
Develop tools move (#3580)
Reorganizes the tools files to support the VOL tests
2023-09-26 13:46:55 -07:00
Scot Breitenfeld
a87ca572fe
Replaces HDgetenv with getenv (#3599) 2023-09-26 13:11:22 -07:00
Dana Robinson
58f3d6664e
Use HDoff_t with lseek consistently (#3600)
lseek on Windows uses __int64 for both the offset and return type
instead of off_t like most POSIX systems. This changes ensures we
use HDoff_t (which is typdef'd correctly on Windows) w/ lseek.
2023-09-26 11:38:07 -07:00
H. Joe Lee
9d41d478ef
Fix typo (givin->given) in test/testframe.c. (#3567) 2023-09-22 08:45:10 -05:00
Dana Robinson
44a00ef876
Strip HD prefix from string/char C API calls (#3540)
* Strip HD prefix from string/char C API calls

* HD(f)(put|get)(s|c)
* HDstr*
* HDv*printf
* HD(s)(print|scan)f
* HDperror

But NOT:

* HDstrcase*
* HDvasprintf
* HDstrtok_r
* HDstrndup

As those are not C99 and have portability work-around
implementations. They will be handled later.

* Fix th5_system.c screwup
2023-09-15 15:13:18 -07:00
Dana Robinson
aa849f07e3
Remove HD prefix from math functions (#3538) 2023-09-14 10:54:00 -07:00
Scot Breitenfeld
75ba9ec7a6
removed C_INT32_T from Fortran APIs (#3537) 2023-09-14 07:51:39 -07:00
Scot Breitenfeld
117d579c32
Consistent initialization of hid_t in the tests (#3521) 2023-09-08 18:06:23 -05:00
Dana Robinson
9208697960
Convert hbool_t --> bool in test (#3494) 2023-09-05 13:11:52 -07:00
Scot Breitenfeld
896270cc6b
Removed all the ranks printing out testing information (#3457) 2023-08-31 21:34:57 -07:00
jhendersonHDF
8ef463e9bd
Fix an issue with use of uninitialized memory in trefer_deprec.c test (#3422) 2023-08-24 08:55:35 -07:00
vchoi-hdfgroup
291b2f7ae4
Implementation of the mpio driver with selection I/O. (#3222)
* This changes the default selection I/O to on for MPIO.
2023-08-06 22:12:07 -05:00
vchoi-hdfgroup
ede4987b63
Fix for the bug exposed from running test/set_extent.c when selection… (#3319)
* Fix for the bug exposed from running test/set_extent.c when selection I/O is enabled.
This is a fix from Neil.
The test/set_extent.c is modified to test for selection I/O enabled.
2023-08-04 16:36:50 -05:00
Sean McBride
07df0d252c
Fixes the last of the -Wextra-semi-stmt warnings (#3326)
* Fixed extra semi warning by adjusting alternative macro definitions

* Find-replace H5E_END_TRY; -> H5E_END_TRY

* Made H5Epush_goto a do-while loop, fixed indentation

* Made GOTOERROR and ERRMSG do-while loops

* Made Hgoto_error and Hgoto_done  do-while loops

* Made vrfy_cint_type and vrfy_ctype  do-while loops

* Made TEST_TYPE_CONTIG and others do-while loops

* Removed extraneous semi-colons

* Committing clang-format changes

---------

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2023-08-02 17:46:26 -05:00
Larry Knox
0d3617135b
Update files to skip list and ignore_words_list (#3321)
* Update files to skip list and ignore_words_list for codespell to not
check files generated by autotools.  Autotools generate misspellings
that can't be fixed in HDF5 code.
2023-08-02 08:39:56 -05:00
Allen Byrne
56451503c5
Fix loading plugin fails with missing directory GH issue #3248 (#3315) 2023-08-01 23:16:11 -05:00
jhendersonHDF
a78863a82c
Fix incorrect error check in H5Ofill.c for undefined fill values (#3312) 2023-08-01 23:14:02 -05:00
Sean McBride
553e1cd311
Another round of fixing -Wextra-semi-stmt warnings (#3264)
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2023-07-24 16:18:04 -05:00
Sean McBride
1903c4b1b0
Fixed more warnings about extra semicolons (#3249)
* Require semi-colon after H5_CHECK_OVERFLOW calls



Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2023-07-18 10:35:05 -05:00
jhendersonHDF
aab497a631
Fix some warnings in developer builds (#3247)
* Fix some warnings in developer builds

* Switch approach to Winline flag
2023-07-18 04:27:07 -07:00
Jan-Willem Blokland
305ac88865
ROS3: (feature) Temporary security credentials (#3030)
- Implemented support for AWS temporary security credentials.
  For this kind of credentials also a session/security token
  should be included in the request by adding the
  x-amz-security-token header.

Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
Co-authored-by: Jordan Henderson <jhenderson@hdfgroup.org>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2023-07-14 15:15:11 -05:00
Larry Knox
145e962bce
Replace support.hdfgroup.org URLs for alternative COPYING file (#3228)
* Replace support.hdfgroup.org URLs for alternative COPYING file
locations in copyright headers with https://www.hdfgroup.org/licenses.
Replace  support.hdfgroup.org URL for alternative COPYING_LBNL_HDF5
with github URL.
Tweak chkcopyright script for change from UICOPYRIGHTSTR to
THGCOPYRIGHTSTR.
2023-07-12 17:33:58 -05:00
Dana Robinson
39e6bf48c9
Remove HD from HDmem* calls (#3211) 2023-06-29 12:33:46 -07:00
Dana Robinson
fd933f30b1
Remove programmer/date from comments (#3210)
* Removes Programmer: and Date: fields
* Fixes a few Modifications: fields leftover from previous work
2023-06-29 12:13:29 -07:00
Dana Robinson
fd56a593b7
Remove HD from C std lib file ops (#3206)
* HDfclose
* HDferror
* HDfeof
* HDfflush
* HDfopen
* HDfread
* HDfwrite
2023-06-29 08:19:31 -07:00
Dana Robinson
8aef67f0ae
Remove HD from strto* calls (#3204)
* HDstrtod
* HDstrtol
* HDstrtoll
* HDstrtoul
* HDstrtoull
* HDstrtoumax
2023-06-29 08:18:49 -07:00
Dana Robinson
9f430d15b0
Rename HDexit() and related to exit(), etc. (#3202)
* HDatexit
* HDexit
* HD_exit
2023-06-29 08:18:01 -07:00
Dana Robinson
a5f1fb01b9
Remove some "Programmer" comments (#3209)
These are meaningless noise.

Removes the "Programmer" lines on comment start lines:

    /* Programmer: John Smith

These complicate my sed script that will rip out the rest of
the comments.
2023-06-29 06:33:49 -07:00
Dana Robinson
dd39b54c95
Rename HDato*() to ato*() (#3201) 2023-06-29 06:33:09 -07:00
Dana Robinson
a90bdbbcfc
Remove HD from protected POSIX calls (#3203)
These calls are non-C99 but protected by ifdefs and have no Windows
equivalents:
* HDalarm
* HDasprintf
* HDclock_gettime
* HDfcntl
* HDgethostname
* HDgetrusage
* HDsymlink
2023-06-29 06:32:40 -07:00
Dana Robinson
aebac33a1f
Remove HD from memory allocate/free calls (#3195)
* HDcalloc
* HDfree
* HDmalloc
* HDrealloc
2023-06-28 15:48:12 -07:00
Dana Robinson
605cea4af6
Remove HD from HDposix_memalign() (#3196)
The posix_memalign call is only used in the direct VFD, which can only
be built if posix_memalign() is available.
2023-06-28 13:03:45 -07:00
Dana Robinson
187ea8a9ae
Rename HD(f)printf() to (f)printf() (#3194) 2023-06-28 08:31:32 -07:00
Dana Robinson
7a44581a84
Rename HDassert() to assert() (#3191)
* Change HDassert to assert

* Fix bin/make_err
2023-06-28 07:31:56 -07:00
Dana Robinson
622fcbd138
Rename HDpipe() to pipe() (#3192)
Pipe is POSIX but implemented in Microsoft's CRT
2023-06-28 07:31:08 -07:00
Dana Robinson
6df077953e
Rename HDqsort() to qsort() (#3193)
* Rename HDqsort() to qsort()

* Committing clang-format changes

---------

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2023-06-28 07:30:54 -07:00
Dana Robinson
7d1fdb2d27
Remove HD from fork/exec*/wait* (#3190)
These are not C99 but are hidden behind ifdefs and are highly
unlikely to ever have non-POSIX equivalents.
2023-06-27 21:35:55 -07:00
Dana Robinson
d81e751d41
Remove HDva_(arg|copy|end|start) (#3184) 2023-06-27 17:43:23 -07:00
Dana Robinson
56513d9df7
Remove dead code behind #ifdef OLD_WAY (#3163) 2023-06-20 22:37:07 -07:00
Sean McBride
65d8c93470
Many fixes to various compiler warnings (#3124)
* Fixed various -Wmissing-variable-declarations by adding static keyword
* In a few cases, renamed the variable suffix from _g to _s.
* Fixed some -Wmissing-variable-declarations by using different declaration macros
* Fixed various -Wconditional-uninitialized warnings by just initializing variable to zero
* Fixed various -Wcomma warnings
* Fixed clang -Wstrict-prototypes warnings
* Fixed various -Wunused-variable warnings
* Updated some casts to fix the only 3 -Wcast-qual warnings
* Fixed the only -Wsometimes-uninitialized warning
2023-06-18 22:13:38 -07:00
Dana Robinson
546d79dad7
Remove HD prefix from network calls (#3142)
HDsocket(), etc. Only affects the mirror VFD and its test code.
2023-06-16 00:16:29 -07:00
Sean McBride
68eba3da69
Many clang -Wextra-semi-stmt fixes (#2537)
* Adds semicolons to function-like macros
* Adds a do..while(0) loop to some macros
* Removes semicolons when inappropriate, especially H5E_TRY_BEGIN/END
2023-06-15 21:49:02 -07:00
Dana Robinson
fcdd0ab9dc
Revert long double checks (#3133)
* Revert "Remove long double conversion work-arounds (#3097)"

This reverts commit 1e1dac1dac.

* Update comments to reflect newer systems
2023-06-15 09:13:22 -07:00
H. Joe Lee
9a8c5810ed
Fix function name in comment in ros3 VFD (#3131) 2023-06-15 07:29:35 -07:00
Dana Robinson
b571da18fc
Fix spelling issues flagged by codespell (#3130) 2023-06-14 18:59:09 -07:00
Dana Robinson
9e7e2f8b8e
Fix a misc warning in test/vol.c (#3112)
The compiler complains about using integers instead of size_t
for some sizes.
2023-06-13 07:56:39 -07:00
Dana Robinson
1e1dac1dac
Remove long double conversion work-arounds (#3097)
Several options and public symbols that were provided to paper
      over non-standard long double conversions between signed/unsigned
      long and long long values were removed from the Autotools and
      CMake. These were added twenty years ago, when C99 and 64-bit
      platforms were less common and are no longer needed.

      Autotools:
        --enable-dconv-accuracy

      CMake:
        HDF5_WANT_DATA_ACCURACY

      H5pubconf.h symbols:
        H5_WANT_DATA_ACCURACY
        H5_LDOUBLE_TO_LONG_SPECIAL
        H5_LONG_TO_LDOUBLE_SPECIAL
        H5_LDOUBLE_TO_LLONG_ACCURATE
        H5_LLONG_TO_LDOUBLE_CORRECT
        H5_DISABLE_SOME_LDOUBLE_CONV
2023-06-12 14:12:57 -07:00
Dana Robinson
d1d6a2187d
Remove code paths where long long < 8 bytes (#3098)
The C99 standard says that a long long is 8+ bytes. This change
removes a few parts of the code where we assume that a long long
could be less than that.
2023-06-12 12:18:23 -07:00