Commit Graph

995 Commits

Author SHA1 Message Date
Allen Byrne
445c805a4c HDFFV-10186 Add endianess to bitfield and fix tests 2017-05-10 10:59:13 -05:00
Allen Byrne
e4e261173f HDFFV-10186 more whitespace formatting 2017-05-10 10:12:19 -05:00
Allen Byrne
4f36f613a6 HDFFV-10186 Whitespace change
Mostly tabs to spaces
Remove Modifications comments
2017-05-09 16:52:05 -05:00
Vailin Choi
bacb45b38a Modifications based on pull request review.
Made couple changes based on the review comments.
2017-04-26 14:00:34 -05:00
Vailin Choi
cb8e82a53d Incorporate patch from GE Healthcare (HDFFV-9934)
This is the same patch that had already been integrated to 1.8 branch (pull request #387).
Tested on moohan, ostrich, platypus, emu, osx1010test, quail, kituo, mayll.
2017-04-25 18:08:53 -05:00
Larry Knox
89fbe00dec Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to hdf5_1_10
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
  Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
  Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
  Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
  Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
2017-04-25 16:05:36 -05:00
Vailin Choi
e9b289a3d1 Fix for HDFFV-10166 h5watch tests fail randomly to match expected output files
(1) Re-structure tests to do one "extend" action at a time
(2) Re-try test till max limit before final failure
2017-04-21 18:42:17 -05:00
Quincey Koziol
1e4b2588b6 Switch to using flag in signal handler, to trigger dropping out of main loop
and shutdown cleanly, instead of calling leave() from the signal handler.
2017-04-03 11:56:52 -07:00
lrknox
ea6c20fdc6 Stop skipping h5watch tests. 2017-03-24 16:30:45 -05:00
Allen Byrne
2562ec3a4b Update CMake files and formatting 2017-03-01 14:47:53 -06:00
Allen Byrne
d1292691c4 HDFFV-9875 enable static pdb and cleanup exports 2017-02-03 12:41:30 -06:00
Allen Byrne
177c050891 HDFFV-9875 Fix target exports and add static tools pdb files 2017-02-02 12:09:10 -06:00
Allen Byrne
f72c95209c Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '089afc48561ba8838d6a515c6b00fc6f7032ca13':
  Updated the developer flags so that they respect gcc versions.
  Description:     Added data files from the packet table vlen tests to the     CHECK_CLEANFILES list. Platforms tested:     Linux/64 (jelly)
2017-01-12 13:40:34 -06:00
Binh-Minh Ribler
afd5bf4b91 Description:
Added data files from the packet table vlen tests to the
    CHECK_CLEANFILES list.
Platforms tested:
    Linux/64 (jelly)
2017-01-12 10:47:32 -06:00
Allen Byrne
244faaa0d0 HDFFV-10094: upgrade cmake command conventions
Also converted tests to use macros
2017-01-11 14:02:34 -06:00
Allen Byrne
e1bcae8a6a Update cmake min version and cmake command convention 2017-01-10 17:10:03 -06:00
Vailin Choi
066e01f967 Skip h5watch tests
Tests for h5watch are skipped temporarily.
Debugging for test failures will be done.
2017-01-09 18:59:06 -06:00
Allen Byrne
508714805a hdf5 lib needed for extend_dset link. 2016-12-28 15:31:58 -06:00
Allen Byrne
518a94dd0f Add test lib to extend_dset test link line 2016-12-28 15:20:09 -06:00
Allen Byrne
9b0f236d8c Add hl test dir and test dlib 2016-12-28 15:09:57 -06:00
Allen Byrne
27feb0357f Fix h5test.h include issue 2016-12-28 15:03:17 -06:00
Quincey Koziol
eefddf2813 Bring new/updated tests from revise+chunks branch: flush1/flush2 update and
flushrefresh test.  (Also refactor of message send / wait code)
2016-12-19 20:44:54 -08:00
Quincey Koziol
57afb68e46 Bring SWMR-related tools changes from revise_chunks to develop. 2016-12-11 11:25:08 -08:00
Quincey Koziol
64a339183f Bring SWMR support in to the main development branch. (Finally!) More tests
and the tool and API wrappers will be coming in over the weekend.
2016-12-02 08:07:04 -08:00
Binh-Minh Ribler
889d7fd733 Description:
- In the test for HDFFV-9758, a pragma pack(1) caused failure on Emu
      because Sparc cannot access misaligned data.  Changed it to pack() to
      do the default alignment.
    - Added DOXYGEN_SHOULD_SKIP_THIS blocks to private elements to prevent
      warnings from doxygen.
Platforms tested:
    SunOS 5.11 (emu)
    Linux/32 2.6 (jam)
2016-10-26 14:16:24 -05:00
Binh-Minh Ribler
061b758c29 Description:
User's sample code used "not" instead of "!" and Windows does
    not like that.  Fixed.
Platforms tested:
    Linux/32 2.6 (jam)
    Darwin (osx1010test)
2016-10-24 09:56:01 -05:00
Binh-Minh Ribler
b3b7ae087e Purpose: Fix Packet Table issues cont.
Description:
    Misc cleanups and comments in tests.
Platforms tested:
    Linux/32 2.6 (jam)
    Darwin (osx1010test)
    Linux/64 (jelly)
2016-10-23 21:03:47 -05:00
Binh-Minh Ribler
be613da6b8 Miscellaneous code cleanup.
Platforms tested:
    Linux/32 2.6 (jam)
    Darwin (osx1010test)
2016-10-20 23:38:24 -05:00
Binh-Minh Ribler
14e308b2e6 Description:
- Removed calls to H5Tget_native_type in the PT code. The application would
    need to do that if desired.
    - Added Abhi's program to tests to verify the fix.
    - This fix might have fixed HDFFV-9927, HDFFV-9042, and the issue reported
      by Barbara Jones from Ametek as well.
Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (jelly)
    Darwin (osx1010test)
2016-10-20 14:07:45 -05:00
Allen Byrne
c3cea7f96e Add missing EXPORT tag in INSTALL command 2016-10-17 09:52:00 -05:00
Allen Byrne
3ee36553b9 Add support for namespace and add tools to binaries config 2016-10-14 11:22:22 -05:00
Allen Byrne
052ca6a741 Correct name and usage of cmake variable 2016-10-10 12:32:06 -05:00
Allen Byrne
9d71583920 Merge pull request #61 in HDFFV/hdf5 from ~BYRN/hdf5_adb:bugfix/HDFFV-9961-add-git-to-ext-filter to develop
* commit 'd817b63020310b6f275a569529075551dd2b756e':
  Fix copyright to point to cmake
  Fix cyclic depends due to typo
  Correct how include is used when located inside project
  HDFFV-9961: Add GIT option to ext lib macros
  Update copyright to latest from kitware
2016-10-06 17:12:46 -05:00
Scot Breitenfeld
c604bca044 Merge pull request #47 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:develop to develop
* commit 'f9364c0080405bb36d704eb3f9505029d3da41f4':
  removed the use of C_SIZEOF for non BIND(C) derived type
  Fixed test to use storage_size instead of c_sizeof when available.
  fixed missing closing bracket
  Removed unused variables.
  Fixed: Fortran_DOUBLE was being set to  C_LONG_DOUBLE when C_LONG_DOUBLE is not available.
  Removed duplicate FCFLAG
  Removed duplicate FCFLAG.
  Added number of integer KINDs found to the header files.
  Added path to source include files when building buidiface.
  Added rule to build buildiface program, without a rule, build would add repeated compile options when using the NAG compiler.
  Misc. cleaning up of the program.
  Added SEQUENCE to derived types for NAG:
  misc. format code-cleanup
  Removed the use of hard-coded integer KINDs.
  Code clean-up.
  HDFFV-9973 Fortran library fails to compile and fails tests with NAG compiler
2016-10-06 15:34:39 -05:00
Allen Byrne
7d6bea96ab Fix cyclic depends due to typo 2016-10-05 16:17:39 -05:00
Allen Byrne
dd9caf37d2 Merge test output file clearing into runTest.cmake 2016-10-03 15:34:11 -05:00
Quincey Koziol
30ca70b096 Merge pull request #46 in HDFFV/hdf5 from ~KOZIOL/hdf5:features/warning_cleanups to develop
* commit '5a7880183025f56421cf6f2274d9f1ac36f59641':
  Clean up hardcoded constants and check return values better.  (Comments from group code review)
  Description:     Cleanups from Dana's review.
  Description:     Further warning cleanups: from 667 warnings to 503.
2016-09-29 15:19:35 -05:00
Quincey Koziol
1853868fdc Description:
Cleanups from Dana's review.

Tested on:
    MacOSX/64 10.11.5 (amazon) w/C++ & FORTRAN
    (h5committest forthcoming)
2016-09-29 11:01:23 -07:00
M. Scot Breitenfeld
064073307a Removed duplicate FCFLAG. 2016-09-29 10:49:08 -05:00
Quincey Koziol
fa66428a6d Description:
Further warning cleanups: from 667 warnings to 503.
2016-09-27 10:29:16 -07:00
M. Scot Breitenfeld
7b056aadff Added SEQUENCE to derived types for NAG:
Section 81 of the compiler manual, e.g. at

http://www.nag.co.uk/nagware/np/r61_doc/np61_manual.pdf

covers details about the compiler's internal representations, including

"
Fortran derived types are translated into C structs.
If BIND(C) or SEQUENCE is used, the order of the items within
the struct is the same as the order within the derived type definition.
Otherwise, the order of items is permuted to
put larger types at the front of the struct so as to improve alignment
and reduce storage; the C output code can be
inspected to determine the ordering used.
"

Removed INTENT(IN) to fix segfaults in C APIs for TYPE(C_PTR).

Tested: NAG (gnu)
2016-09-23 11:31:43 -05:00
M. Scot Breitenfeld
3c37126585 Removed the use of hard-coded integer KINDs. 2016-09-22 15:24:35 -05:00
Allen Byrne
583af563d9 Add missing target depends command 2016-09-21 12:22:16 -05:00
Allen Byrne
408aaba902 Add missing SH to target name 2016-09-21 10:48:12 -05:00
Allen Byrne
e219ee88e4 Add gen file technique to HL and test fortran libraries 2016-09-21 10:46:03 -05:00
Vailin Choi
197b29ced6 [svn-r30289] Fix for HDFFV-9960 H5DOappend without append callback.
This is the second part of the fix--see crucible review HDF5-383.
Tested on mayll, platypus, osx1010test, emu, kituo, kite, quail, moohan, ostrich.
2016-08-14 18:02:49 -05:00
Quincey Koziol
f40381b0ea [svn-r30285] Description:
More warning cleanups, bringing the build down to 25 unique types of
warnings, with 550 warnings in 122 files (down from 28, 770, and 134).

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial & parallel
    (h5committest forthcoming)
2016-08-13 04:23:53 -05:00
Vailin Choi
4d358ef0af [svn-r30262] Fix for HDFFV-9960: H5DOappend will not fail if a dataset has no append callback registered.
Tested on mayll, platypus, osx1010test, emu, moohan, kituo, ostrich, kite, quail.
2016-08-05 15:13:54 -05:00
Allen Byrne
bac4cf8e92 [svn-r30238] Follow-on to HDFFV-9928: remove unconditional call of time.h type headers. Also remove duplicated includes when h5private.h is used. 2016-08-01 12:38:34 -05:00
Allen Byrne
e55844b752 [svn-r30237] HDFFV-9939: Change cmake commands to reduce POST_BUILD custom commands. Fixes possible overruns on windows command lines. 2016-08-01 12:35:00 -05:00