3412 Commits

Author SHA1 Message Date
Larry Knox
ab6679315c Update COPYING file.
Remove hdfs from list of vfds for check-vfd testing as it is read-only.
2019-07-30 16:37:57 -05:00
Larry Knox
094f14ef38 Add HD to string functions.
Switched strtoul to strtoumax in H5FDs3comms.c.
Removed unused functions and variables in s3 and hdfs TestH5Pfapl*.java.
Update Copyright headers.
2019-07-26 11:56:03 -05:00
Larry Knox
8008294578 Squashed commit of the following:
Merge changes from update_merged_S3_HDFS branch into develop.

commit d5034315aea88629929ac0c9c59ebfafd5f21a31
Merge: 9c48823 d3fdcd8
Author: Larry Knox <lrknox@hdfgroup.org>
Date:   Thu Jul 25 08:24:53 2019 -0500

    Merge branch 'develop' into update_merged_S3_HDFS
2019-07-25 11:47:12 -05:00
Allen Byrne
b9332d6a13 Correct format of drive check 2019-07-22 17:13:56 -05:00
Allen Byrne
9877da0a6f HDFFV-10845 fix comment syntax 2019-07-21 16:46:47 -05:00
Allen Byrne
1932752177 HDFFV-10845 Windows drive can only goto Z 2019-07-21 14:19:23 -05:00
Allen Byrne
f724e86727 HDFFV-10845 use of TARGETFILE disables auto emulator 2019-07-17 11:58:04 -05:00
Allen Byrne
7ba562a820 HDFFV-10845 fix configure check and PATHs 2019-07-17 11:58:03 -05:00
Allen Byrne
7174b5c135 HDFFV-8631 mingw is different platform 2019-07-17 11:58:02 -05:00
Quincey Koziol
db7c43d375 Updates to warnhist script, along with a few cleanups, and add some comments
to warning cleanups that are a bit obscure.
2019-07-09 22:15:36 -05:00
Quincey Koziol
3b594992d6 Add support for GCC9, update warnhist script, and clean up warnings. 2019-07-02 23:43:45 -05:00
Dana Robinson
d0bc570c2c Merge pull request #1787 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor_pr to develop
* commit 'f250815151df8da8a93c0ff781a3cf134f1c6cbd':
  Cleaned up misc warnings.
2019-07-02 09:26:55 -05:00
Dana Robinson
f250815151 Cleaned up misc warnings. 2019-06-29 02:38:14 -07:00
Quincey Koziol
6ced6457c3 Move the -Wformat-nonliteral warning to the developer flags. Fix bugs
I introduced in the last commit.
2019-06-28 19:26:47 -05:00
Quincey Koziol
2042c775f0 Merge branch 'develop' into feature/update_gcc_flags 2019-06-28 16:13:36 -05:00
Dana Robinson
8f0aacce8f Merge pull request #1782 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:warning_fixes to develop
* commit '1c4101c6a77dd9223483dd9e3f7bec0f9e92f435':
  Fixed various warnings in testhdf5 files.
  Warning fixes: * fix for static/const flipped in H5Dint.c * Removed missing done target in H5Rint.c * Fixed misleading indentation in h5format_convert.c
2019-06-28 10:03:45 -05:00
Quincey Koziol
d5130bb573 Updated configure & CMake compiler flags for GCC 8.x, along with corresponding
changes to warnhist script (and some extra improvements for condensing C++
and Java warnings), and fixed a bunch of warnings.
2019-06-28 09:10:43 -05:00
Dana Robinson
1c4101c6a7 Fixed various warnings in testhdf5 files. 2019-06-28 00:17:33 -07:00
Vailin Choi
565e3d7951 Merge pull request #12 in ~VCHOI/my_third_fork from develop to bugfix/new_shutdown_fsm
* commit '2c69584fb124c20e1dd06c31f2baf240b50b381c':
  Fixed missing return value checks in VDS tests.
2019-06-27 15:52:36 -05:00
Dana Robinson
569d051df5 Fixed missing return value checks in VDS tests. 2019-06-26 21:55:11 -07:00
Vailin Choi
9cafc8d4de Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~vchoi/my_third_fork into bugfix/new_shutdown_fsm 2019-06-26 15:47:54 -05:00
Vailin Choi
439ea92d7e Merge pull request #1772 in HDFFV/hdf5 from ~VCHOI/my_third_fork:bugfix/HDFFV-10808-h5pset_file_space_strategy-succeeds to develop
* commit '3768566139df18928aa29ece0eff3010b224633b':
  Add release notes.
  Correct hid_t error value to H5I_INVALID_HID in tests related to libver_bounds.
  Fix for HDFFV-10808 H5Pset_file_space_strategy succeeds when using H5Pset_libver_bounds v18,v18. Fails file creation when non-default free-space info is set in fcpl and the library version high bound is less than v110 because free-space info message is introduced in library release v110.
2019-06-26 10:47:31 -05:00
Dana Robinson
8ac60adaa2 Banish enum increment warnings 2019-06-25 23:19:09 -07:00
Dana Robinson
b40a6f75aa Fixed a memory issue in trefer.c. 2019-06-25 12:08:33 -07:00
Vailin Choi
71de5b8088 Correct hid_t error value to H5I_INVALID_HID in tests related to libver_bounds. 2019-06-25 11:47:33 -05:00
Vailin Choi
d9653606d8 Fix for HDFFV-10808 H5Pset_file_space_strategy succeeds when using H5Pset_libver_bounds v18,v18.
Fails file creation when non-default free-space info is set in fcpl and the library version
high bound is less than v110 because free-space info message is introduced in library release v110.
2019-06-24 18:08:23 -05:00
Vailin Choi
7485981bca Merge pull request #8 in ~VCHOI/my_third_fork from develop to bugfix/new_shutdown_fsm
* commit '35fd0ec8ceffe96cee352187154da15c967fb990':
  Updated H5Tcopy() to get the dataset's datatype through the VOL when that is passed in as the object ID.
  Fix fortran test and test library linking
  Update GCC 6 & 7 flags for CMake builds
  Move -Wnormalized down into GCC 6.x flags
  Put the memcpy overlap check back into H5MM.
  Fixed the heap overflow in t_filters_parallel
  Fixed some low-hanging fruit from -fsanitize in t_filters_parallel.
  Add lib dir for testing plugins
  Add support for GCC 7.x warnings, update warnhist script to account for them, clean up warnings.
  Add H5_HLDLL prefix for windows link
  HDFFV-10805 cleanup examples and test code
  Fix minor typo in H5S_select_iter_release
  Add missing fortran mods
  HDFFV-10805 Fix test of library libinfo
  Cleanup possible CMake target conflicts
  Correct CMake issues
2019-06-24 15:04:38 -05:00
Quincey Koziol
1ccbdfee58 Add support for GCC 7.x warnings, update warnhist script to account for them,
clean up warnings.
2019-06-21 10:05:34 -05:00
Vailin Choi
61b2dddc25 Checkin for new shutting down free-space manager. 2019-06-20 16:14:33 -05:00
Allen Byrne
1e31a86dab Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '2e973f7e12301975f9d8dfdd5534682525554e77':
  Fix minor typo in H5S_select_iter_release
  Fix memory leak in objcopy test after H5Aread of vlen data
2019-06-20 06:55:29 -05:00
Jerome Soumagne
552cc1b4a4 Fix memory leak in objcopy test after H5Aread of vlen data 2019-06-19 14:03:21 -05:00
Allen Byrne
08df37027c HDFFV-10805 Fix test of library libinfo 2019-06-19 13:59:49 -05:00
Dana Robinson
4d20db43be Merge pull request #1750 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:ohdr_test_memory_issue to develop
* commit '6a1e9a1fbe9606d0dd3452092cab17794e131e64':
  Fixed a problem in the ohdr test where hard-coded strings passed to H5Awrite() triggered -fsanitize failures.
2019-06-19 10:23:04 -05:00
Dana Robinson
6a1e9a1fbe Fixed a problem in the ohdr test where hard-coded strings passed
to H5Awrite() triggered -fsanitize failures.
2019-06-18 17:28:37 -07:00
Allen Byrne
d118a47a92 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '712a2a13d8add828d053135a172abb2e819d59ad':
  Fixed a warning in H5CX.c concerning incorrect use of freeing VOL connector info.
  Add H5S_SEL_ITER_SHARE_WITH_DATASPACE selection iterator creation flag, to share dataspace's selection with iterator (and with caution about not modifying or closing the dataspace while the iterator is open).
  Fix misc. typos, etc. from code review
  New hyperslab selection routines and new public selection iterator routines.
2019-06-18 12:12:24 -05:00
Allen Byrne
e7f16c6f2c HDFFV-10805 Add option to only build shared targets
HDFFV-10805 Add ONLY_SHARED_LIBS option and prefer shared over static
HDFFV-10803 Update FindSZIP.cmake find module
Remove unneeded modules and update java modules
2019-06-18 07:46:25 -05:00
Quincey Koziol
49f14964c3 Add H5S_SEL_ITER_SHARE_WITH_DATASPACE selection iterator creation flag, to
share dataspace's selection with iterator (and with caution about not modifying
or closing the dataspace while the iterator is open).
2019-06-17 18:19:05 -05:00
Quincey Koziol
0656cd47d9 Merge branch 'develop' into merge_hyperslab_04 2019-06-17 10:35:36 -05:00
Vailin Choi
f7c2a75404 Merge pull request #1729 in HDFFV/hdf5 from ~VCHOI/my_third_fork:bugfix/HDFFV-10800-h5ocopy-failure to develop
* commit 'dfdc27b04b2e8bcd1985ba90ce6553d8b3805fda':
  Fix release notes based on feedback from pull request.
  Fix for HDFFV-10800 H5Ocopy failure: The value for the H5F_LIBVER_V18 index in H5O_fill_ver_bounds[], the format version bounds array for fill value message, should be version 3 not 2.
2019-06-17 10:28:58 -05:00
Dana Robinson
dbad158900 Fixed problem with H5Fdelete "test" and split VFD. 2019-06-15 21:00:48 -07:00
Quincey Koziol
0525ee122f New hyperslab selection routines and new public selection iterator routines. 2019-06-15 21:25:28 -05:00
Dana Robinson
ad168f5a7a Added the creation and use of an attribute access property list to
testhdf5.
2019-06-15 12:44:36 -07:00
Dana Robinson
bb9370d777 Merge branch 'develop' into vol_dev_headers
Also moved the wrapper functions from the H5VLconnector.h to
H5VLconnector_passthru.h
2019-06-14 12:23:06 -07:00
Vailin Choi
8d72e5e3e0 Fix for HDFFV-10800 H5Ocopy failure:
The value for the H5F_LIBVER_V18 index in H5O_fill_ver_bounds[], the format
version bounds array for fill value message, should be version 3 not 2.
2019-06-12 12:55:12 -05:00
Dana Robinson
2bd041f878 Added H5Fdelete call and VOL support (but no VFD/native implementation). 2019-06-11 09:04:23 -07:00
Dana Robinson
a18727bc77 Added a VOL initialization property list type. 2019-06-05 04:34:36 -07:00
Neil Fortner
35a8a549f6 Refactor H5S__hyper_project_intersection to operate directly on span
trees, improving performance and removing the conditionn that the
extents be equal.
2019-05-31 19:26:56 -05:00
Dana Robinson
0afb76228e Added code that disallows unregistering the native VOL connector. 2019-05-24 13:39:45 -07:00
Dana Robinson
d5a8b2a80c Split VOL connector routines into separate headers:
* H5VLconnector.h for terminal connector things
* H5VLconnector_passthru.h for passthrough connector things

Note that these headers are arranged such that they are included in
hdf5.h so VOL connectors only need to include that. The separation into
multiple headers is mainly for readability.
2019-05-24 02:22:08 -07:00
Allen Byrne
0b086c3db2 Correct message command syntax 2019-05-17 15:14:20 -05:00