* commit 'db6eab893e5f027f0b535316e0e7a9abe9ff8619':
Implement public H5Sselect_project_intersection(). Updated internal algorithm to (optionally) avoid sharing selection data structures. Tested internal code (including with valgrind) by setting VDS code to avoid sharing selection, has since been changed to share selection for performance, so this code is not yet tested in regression tests. API has not been tested.
algorithm to (optionally) avoid sharing selection data structures.
Tested internal code (including with valgrind) by setting VDS code to
avoid sharing selection, has since been changed to share selection for
performance, so this code is not yet tested in regression tests. API
has not been tested.
* commit '4d834adba4aeb1a0174bddb83212b7073b64e269':
Use HD prefix.
Fix HDFFV-10937: use a more reliable (and probably faster) scheme for visiting all elements of a matrix in an arbitrary order.
* commit 'f1b39ad80e2fc0d0f4f6ecae2a9fb0ea436c34cc':
Apparently, + has no special meaning, and neither does \+, in so-called "obsolete" / POSIX "basic" regular expressions. Also, not every version of `sed` out there supports the `-E` option. So delete the -E flag and use the regex `[^/][^/]*` instead of `[^/]+`.
"obsolete" / POSIX "basic" regular expressions. Also, not every version of
`sed` out there supports the `-E` option. So delete the -E flag and use
the regex `[^/][^/]*` instead of `[^/]+`.
Add config/netbsd to the MANIFEST.
* commit '1dbec40d465072540f8507c524ae7b909a6b1cf0':
Implement H5VLget_file_type() to return a copy of a datatype with the location set to be in a file. Only meant to be used by VOL connectors. Implement H5VLpeek_connector_id() to support connectors querying their own IDs. Fix app_ref with connector IDs in a couple places (external VOLs registered as default through ENV should be visible to the application). Modify vlen and reference interfaces to work with arbitrary VOL connectors. Implement file "post open" specific callback, to enable connectors to update their file structs after a wrap context has been set.
location set to be in a file. Only meant to be used by VOL connectors.
Implement H5VLpeek_connector_id() to support connectors querying their
own IDs. Fix app_ref with connector IDs in a couple places (external
VOLs registered as default through ENV should be visible to the
application). Modify vlen and reference interfaces to work with
arbitrary VOL connectors. Implement file "post open" specific
callback, to enable connectors to update their file structs after a
wrap context has been set.
* commit '0b721858e46a317c370a24115032d5be41688f67':
Make these scripts relocatable again: derive a relative path for the original installation prefix from the examples prefix. Use that relative path to locate the current installation prefix, always. Fall back to an absolute installation prefix if the relative path cannot be derived.
Get the path to prefix right: needs a ../ to back out of subdirectory c/.
Make this script relocatable again: derive a relative path for the original installation prefix from the examples prefix. Use that relative path to locate the current installation prefix, always. Fall back to an absolute installation prefix if the relative path cannot be derived.
Let us override the examples directory using --with-examplesdir=DIR. This is handy for NetBSD where HDF5 examples are installed by convention in $prefix/share/examples/hdf5/ rather than in ${prefix}/share/hdf5_examples/, which is the HDF5 default.
Follow longstanding execv convention for compatibility with NetBSD.
Under the examples directories, always find the installed HDF5 executables and scripts using @prefix@ instead of a relative path, because the number of ../ in the relative path will be different on NetBSD than on other systems.
Make the HDF5 configure script grok NetBSD.
For portability, insulate the HDF5 library from some system macros.
Not every system has perl installed in /usr/bin/, so change the shebang (#!) line to `/usr/bin/env perl` to locate perl on the PATH.
For portability, use the POSIX sh(1) string-comparison operator `=` instead of `==`.
original installation prefix from the examples prefix. Use that
relative path to locate the current installation prefix, always. Fall
back to an absolute installation prefix if the relative path cannot be
derived.
original installation prefix from the examples prefix. Use that
relative path to locate the current installation prefix, always. Fall
back to an absolute installation prefix if the relative path cannot be
derived.
* commit '299c9ed5fe19edac37cab27bc04d587fa67568c2':
Removed set_bigio_count prototype since it has been added to H5private.h
Change API names for get/set bitio_count. Also added H5_mpi_set_bigio_count to H5private.h.
Fix encode and decode of deprecated object reference addresses
Make H5Rdeprec.c use tokens instead of haddr_t
Fix H5Oopen_by_addr() to serialize addr to token
* commit '78268762bcf9cb949f711fa0e5290f96957cb60a':
Improvements in response to Allen's suggestions.
Corrections and improvements to testh5dump.sh.in changes.
Fix errors in testh5dump.sh tests that grep for reference error messages.
* commit '4c558700ab33934e7358483c5d20fea4823baf9e':
Update RELEASE.txt for reference changes
Fix reference type comparison in h5dump
Make wrappers, tests and tools use H5Treclaim() instead of H5Dvlen_reclaim()
Add new H5R API that abstracts object, region and attribute reference types
Remove ability to loc by ref from H5VL layer
Add support for retrieving object name by token
Add H5VL_OBJECT_GET_TYPE to get object type
Add H5VL_MAX_TOKEN_SIZE and H5VL_token_t
Adapt Jerome's "file info" H5VL 'get' query to retrieve container token info.
Fix H5VL_blob_get to return size of blob
Add 'blob' callbacks to VOL, along with a native implementation to store them in the global heap, and changed the VL datatype conversion code to use blobs.
Remove debugging logic from the new t_bigio test
Expanded t_bigio.c to include Jordan's test from HDFFV-10539
Another cleanup pass as suggested by the reviewers.
Fix some typos and remove an unused prototype from H5Sprivate.h
At the suggestion of the PR reviewers, moved the mpio_create_large_type to H5mpi.c and renamed the function appropriately. Also moved some support functions to set and get the vvalue where we transistion to using derived datatypes.
Made code review edit suggested by Jerome, plus various code updates to files that I touched to eliminate compile warnings (on my Linux box).
No functional changes, just removed some tab characters
Make the initial bug fixes to allow >2GB writes with Independent IO
* commit '9ed9762889fcd05dc230d6652b92fddc5ec880a4':
Update RELEASE.txt for reference changes
Fix reference type comparison in h5dump
Make wrappers, tests and tools use H5Treclaim() instead of H5Dvlen_reclaim()
Add new H5R API that abstracts object, region and attribute reference types
Remove ability to loc by ref from H5VL layer
Add support for retrieving object name by token
Add H5VL_OBJECT_GET_TYPE to get object type
Add H5VL_MAX_TOKEN_SIZE and H5VL_token_t
Adapt Jerome's "file info" H5VL 'get' query to retrieve container token info.
Fix H5VL_blob_get to return size of blob
Add 'blob' callbacks to VOL, along with a native implementation to store them in the global heap, and changed the VL datatype conversion code to use blobs.
* commit 'abb43d3d3ac2e802d0efbe21e028381ed99722f9':
Remove debugging logic from the new t_bigio test
Expanded t_bigio.c to include Jordan's test from HDFFV-10539
Another cleanup pass as suggested by the reviewers.
Fix some typos and remove an unused prototype from H5Sprivate.h
At the suggestion of the PR reviewers, moved the mpio_create_large_type to H5mpi.c and renamed the function appropriately. Also moved some support functions to set and get the vvalue where we transistion to using derived datatypes.
Made code review edit suggested by Jerome, plus various code updates to files that I touched to eliminate compile warnings (on my Linux box).
No functional changes, just removed some tab characters
Make the initial bug fixes to allow >2GB writes with Independent IO
Also support references to external files
Add new H5T_REF type and type conversion routines
Support conversion from H5T_REF_OBJ/DSET_REG to H5T_REF
Add H5Treclaim() API to reclaim memory of vlen/reference types
Deprecate H5Dvlen_reclaim()
Fix H5T_vlen_reclaim() and H5T_reclaim() to use private callback
Add H5T_ref_reclaim()
Move previous H5R APIs to H5Rdeprec.c
Clean up H5Ocopy
Separate H5O_copy_expand_ref() to H5Ocopy_ref()
Add support for copying new reference types
Clean up deprecated routines to go through VOL and same code path
Fix return codes in existing trefer.c test
Rename trefer.c to trefer_deprec.c
trefer.c is for new references
Add performance test for trefer
Add additional obj_copy_ref test
Make use of tokens and blobs to store references
Skip blob encoding for object references
Start adding new reference examples
Fix const in blob API
Add H5HG_HEAP_ID_SIZE macro to return native blob size
Add maximum size for blobs
Fix blob API callbacks to pass VOL file object
Add public wrappers for blob VOL API
Implement passthrough blob callbacks
Update H5Tvlen after callback changes
Update trace information for H5VL blob routines
Fix public header inclusion in native and passthru headers
in the global heap, and changed the VL datatype conversion code to use blobs.
Move encode/decode of sequence lengths into VL datatype callbacks, from native
VOL blob routines.
