Commit Graph

20491 Commits

Author SHA1 Message Date
Jerome Soumagne
68852d726c Merge pull request #2057 in HDFFV/hdf5 from ~JSOUMAGNE/hdf5:topic_get_file_id_native to develop
* commit 'f46494ffd8449fc610798c8af312362608029d3d':
  Remove H5VL_NATIVE_FILE_GET_FILE_ID and add H5VL_OBJECT_GET_FILE
2019-11-27 14:19:41 -06:00
Jerome Soumagne
f46494ffd8 Remove H5VL_NATIVE_FILE_GET_FILE_ID and add H5VL_OBJECT_GET_FILE
Remove H5F__get_file_id() and use only private routine instead
2019-11-27 14:17:08 -06:00
David Young
5e800bff9d Merge pull request #2062 in HDFFV/hdf5 from ~DYOUNG/vchoi_fork:revert-c99-designated to develop
* commit '0108072f7a746b809952d5cc560577f931b64f71':
  Revert "Make a squash commit of 'Quiet some warnings by adjusting warnings level and fixing some code.' (commit 5c911d8baf)"
  Revert "Oops, remove more C99 designated initializers for VS 2010 compatibility."
2019-11-27 13:18:53 -06:00
David Young
0108072f7a Revert "Make a squash commit of 'Quiet some warnings by adjusting warnings level and fixing some code.' (commit 5c911d8baf)" 2019-11-27 11:26:02 -06:00
David Young
8fb9fb5d4d Revert "Oops, remove more C99 designated initializers for VS 2010 compatibility."
This reverts commit f907b511d0.
2019-11-27 11:16:52 -06:00
kmu
ea0759d047 Merge branch 'develop' of https://git.hdfgroup.org/scm/hdffv/hdf5 into develop 2019-11-26 21:59:51 -06:00
kmu
e0262c8bed Revert "fix warnings from Intel compiler"
This reverts commit 8b9338ab57.
2019-11-26 17:24:48 -06:00
kmu
bfbd613f53 Revert "fix warnings and some text alignment"
This reverts commit d06474c4e1.
2019-11-26 17:24:24 -06:00
kmu
e971c0afa1 Revert "let hdf5 pick up the right compiler in Intel environment"
This reverts commit 3613ec7296.
2019-11-26 17:24:11 -06:00
kmu
2bb0f52edf Revert "fix issues from previous PR comments"
This reverts commit d242a900f4.
2019-11-26 17:23:58 -06:00
kmu
4c8a2f726a Revert "using a different MACRO"
This reverts commit fc61b7a9f3.
2019-11-26 17:23:34 -06:00
Jerome Soumagne
6b68cc352f H5R: fix H5Tconv to check for null references
Valid for both deprecated and non-deprecated references

Update test
2019-11-26 15:50:08 -06:00
Neil Fortner
9f61c26927 Merge pull request #2045 in HDFFV/hdf5 from ~NFORTNE2/hdf5_naf:select_adjust to develop
* commit '4e12984b77cdd7615843d94f8de8d54db27476ac':
  Move checking for zero offset in selection adjust calls to the selection callbacks.  This makes the procedure for checking it consistent across selection types and between _s and _u, ensures it is always is performed even when called within the H5S package, and removes the redundant check that would occur when callins H5S_select_adjust_s() from outside the H5S package.
  Replace H5Sselect_adjust_u() and H5Shyper_adjust_s() with H5Sselect_adjust.  Implement "adjust_s" callback for all selection types.  Add range checking to H5Sselect_adjust().
2019-11-26 11:38:25 -06:00
Richard Warren
8a790fe85a Adds a new t_2Gio.c MPI test 2019-11-26 09:20:47 -05:00
Dana Robinson
5f3414e4d9 Merge pull request #2054 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:vol_trivial to develop
* commit '9a93ecac522d9032efd9cdc39ff0550412e54565':
  Trivial parameter renaming in VOL API calls.
2019-11-25 23:23:52 -06:00
Allen Byrne
dcae4544a3 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit 'a8892bb42d6f6e4fbc30fae0eb2b957f81c938b9': (45 commits)
  Oops, remove more C99 designated initializers for VS 2010 compatibility.
  Add an #include to get a function declaration.
  Don't use C99 designated initializers, they're not compatible with Visual Studio 2010.
  Quiet some more maybe-uninitialized warnings---each is a false positive, *sigh*.  This is more code that may not compile with VS2010, *sigh sigh*.
  Always warn on maybe-uninitialized.  -Wincompatible-pointer-types was not available until GCC 5, so enable it only if that's the GCC version we're using.
  Only promote maybe-uninitialized warnings to errors on GCC 8.  Even on GCC 8, there may be false positives at low optimization levels?  I need to check.
  Only use -Werror=cast-function-type with GCC 8 and later.
  Put all of the -W options back into the order I found them in so that it's easier to compare old and new config/gnu-flags.
  Add new source files to CMakeLists.txt.
  Mention the -Werror= flags in libhdf5.settings.in.
  free -> HDfree
  Promote decleration-after-statement warnings to errors.
  Quiet decleration-after-statement warnings.
  Move a statement under some declarations since some vintages of Visual Studio don't like declarations after statements.
  Document H5D__chunk_mem_xfree_wrapper().
  Undo accidental test deletion.
  Oops, delete a debug printf that snuck in here.
  Undo my changes to the HD macros, hadn't really intended those to be on this branch....
  Make errors of some more warnings.  Move disabled warnings to DEVELOPER_WARNING_CFLAGS.  Put just one warning option on a line, and sort some of the options.
  Cast to the parameter type, H5VL_token_t *, instead of to unsigned char *.
  ...
2019-11-25 18:21:14 -06:00
David Young
a8892bb42d Merge pull request #2055 in HDFFV/hdf5 from ~DYOUNG/vchoi_fork:add-werror-and-squash-some to develop
* commit 'f907b511d06612dafc7814a7c30f2f3d2b76d52b':
  Oops, remove more C99 designated initializers for VS 2010 compatibility.
2019-11-25 17:33:54 -06:00
David Young
f907b511d0 Oops, remove more C99 designated initializers for VS 2010 compatibility. 2019-11-25 17:30:08 -06:00
Dana Robinson
9a93ecac52 Trivial parameter renaming in VOL API calls. 2019-11-25 15:30:04 -08:00
David Young
5c911d8baf Merge pull request #2030 in HDFFV/hdf5 from ~DYOUNG/vchoi_fork:add-werror-and-squash-some to develop
* commit '62208b056a09c01855fbac7f75146be58ad6bfe5': (44 commits)
  Add an #include to get a function declaration.
  Don't use C99 designated initializers, they're not compatible with Visual Studio 2010.
  Quiet some more maybe-uninitialized warnings---each is a false positive, *sigh*.  This is more code that may not compile with VS2010, *sigh sigh*.
  Always warn on maybe-uninitialized.  -Wincompatible-pointer-types was not available until GCC 5, so enable it only if that's the GCC version we're using.
  Only promote maybe-uninitialized warnings to errors on GCC 8.  Even on GCC 8, there may be false positives at low optimization levels?  I need to check.
  Only use -Werror=cast-function-type with GCC 8 and later.
  Put all of the -W options back into the order I found them in so that it's easier to compare old and new config/gnu-flags.
  Add new source files to CMakeLists.txt.
  Mention the -Werror= flags in libhdf5.settings.in.
  free -> HDfree
  Promote decleration-after-statement warnings to errors.
  Quiet decleration-after-statement warnings.
  Move a statement under some declarations since some vintages of Visual Studio don't like declarations after statements.
  Document H5D__chunk_mem_xfree_wrapper().
  Undo accidental test deletion.
  Oops, delete a debug printf that snuck in here.
  Undo my changes to the HD macros, hadn't really intended those to be on this branch....
  Make errors of some more warnings.  Move disabled warnings to DEVELOPER_WARNING_CFLAGS.  Put just one warning option on a line, and sort some of the options.
  Cast to the parameter type, H5VL_token_t *, instead of to unsigned char *.
  Change hdset_reg_ref_t and H5R_ref_t from arrays of unsigned char to structs containing those arrays.  Encapsulating the arrays in this way makes it easier to write and think about pointers to these types, casts to/from these types, etc.
  ...
2019-11-25 16:58:27 -06:00
David Young
62208b056a Add an #include to get a function declaration. 2019-11-25 16:56:03 -06:00
David Young
d07aeef6ad Merge remote-tracking branch 'hdf5/develop' into add-werror-and-squash-some 2019-11-25 16:38:21 -06:00
Chris Hogan
3664cea5d6 Fix failing test and retain semantics for chunk cache properties in non-chunked datasets 2019-11-25 16:28:51 -06:00
David Young
f2f8a554e6 Don't use C99 designated initializers, they're not compatible with
Visual Studio 2010.
2019-11-25 15:43:56 -06:00
kmu
fc61b7a9f3 using a different MACRO 2019-11-25 15:17:55 -06:00
Allen Byrne
be971e8ec2 Remove unneeded flag overwrites 2019-11-25 12:53:45 -06:00
Allen Byrne
a8e8f491c0 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit 'b8a56718e40efaf6954a760984b9d513dbff8f7d':
  Add documentation for H5CX_get_ohdr_flags
  Add object header flags to API context
  Use major error code of calling package
  Handle H5CX_state_t for lcpl
  Add character encoding to lcpl context
  Change LC property name from 'create_intermediate_group' to 'intermediate_group'
  Use API context to store/retrieve LCPL when creating intermediate groups
2019-11-25 12:52:02 -06:00
kmu
d242a900f4 fix issues from previous PR comments 2019-11-25 12:48:51 -06:00
Chris Hogan
b8a56718e4 Merge pull request #2029 in HDFFV/hdf5 from ~CHOGAN/hdf5:feature/cx_lcpl to develop
* commit '4ce9c10c568ff81ebd4eb7585039cbe3c40d1718':
  Add documentation for H5CX_get_ohdr_flags
  Add object header flags to API context
  Use major error code of calling package
  Handle H5CX_state_t for lcpl
  Add character encoding to lcpl context
  Change LC property name from 'create_intermediate_group' to 'intermediate_group'
  Use API context to store/retrieve LCPL when creating intermediate groups
2019-11-25 11:39:04 -06:00
David Young
edd5297143 Quiet some more maybe-uninitialized warnings---each is a false positive,
*sigh*.  This is more code that may not compile with VS2010, *sigh
sigh*.
2019-11-22 15:31:00 -06:00
David Young
6d5ec83fc3 Always warn on maybe-uninitialized. -Wincompatible-pointer-types was not
available until GCC 5, so enable it only if that's the GCC version we're using.
2019-11-22 14:34:42 -06:00
David Young
fa1dfbbd8d Only promote maybe-uninitialized warnings to errors on GCC 8. Even on
GCC 8, there may be false positives at low optimization levels?  I need
to check.
2019-11-22 14:23:07 -06:00
David Young
dde718ad51 Only use -Werror=cast-function-type with GCC 8 and later. 2019-11-22 13:49:59 -06:00
David Young
edb6f34440 Put all of the -W options back into the order I found them in so that it's
easier to compare old and new config/gnu-flags.
2019-11-22 13:41:45 -06:00
Chris Hogan
0de8401d34 Add two missing calls to H5I_dec_ref for new dapl_id 2019-11-21 16:21:06 -06:00
Allen Byrne
772846eb05 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '33d173d672f4affc804cf6e3c43b92693bd3ed68':
  Modify H5Ssel_iter_get_seq_list() to accept iterators that have reached the end of iteration (returning zero sequences).  Previously it could cause an assertion failure.
2019-11-21 09:33:23 -06:00
Allen Byrne
5fe5caf560 Comment correction 2019-11-21 09:33:04 -06:00
David Young
456171651a Add new source files to CMakeLists.txt. 2019-11-20 16:56:00 -06:00
David Young
adb0c7bde5 Mention the -Werror= flags in libhdf5.settings.in. 2019-11-20 15:54:15 -06:00
David Young
559bcaf570 free -> HDfree 2019-11-20 15:53:46 -06:00
Neil Fortner
33d173d672 Merge pull request #2043 in HDFFV/hdf5 from ~NFORTNE2/hdf5_naf:seq_list_fix to develop
* commit 'c104f4cb87a1558ab6a772967887738dc9800f0d':
  Modify H5Ssel_iter_get_seq_list() to accept iterators that have reached the end of iteration (returning zero sequences).  Previously it could cause an assertion failure.
2019-11-20 12:02:46 -06:00
Allen Byrne
79f45aacea Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '13456df8a47fdcd8f96f170c9218e57a03066120':
  Minor correction
  Update list of tested platforms
  Add VS2019 support
  Fixed the H5_mpi_get_bigio_count function prototype
2019-11-20 06:51:54 -06:00
Allen Byrne
13456df8a4 Merge pull request #2048 in HDFFV/hdf5 from ~BYRN/hdf5_merge_adb:develop to develop
* commit 'efe234c832581d16d3da41fe71b50ef71fd44acc':
  Minor correction
  Update list of tested platforms
  Add VS2019 support
2019-11-19 15:48:06 -06:00
Allen Byrne
efe234c832 Minor correction 2019-11-18 15:32:19 -06:00
Allen Byrne
0f09287b19 Update list of tested platforms 2019-11-18 15:02:10 -06:00
Allen Byrne
265325fb9a Add VS2019 support 2019-11-18 14:58:06 -06:00
Richard Warren
3f9c7efbd9 Merge pull request #2047 in HDFFV/hdf5 from h5_private_prototype_fix to develop
* commit 'c440e05de82b224a0a6b042ec8a27accdc1e48ae':
  Fixed the H5_mpi_get_bigio_count function prototype
2019-11-18 14:18:55 -06:00
Chris Hogan
fd1970572f Community-proposed fix 2019-11-18 14:07:03 -06:00
Richard Warren
c440e05de8 Fixed the H5_mpi_get_bigio_count function prototype 2019-11-18 15:04:35 -05:00
Neil Fortner
4e12984b77 Move checking for zero offset in selection adjust calls to the selection callbacks. This makes the
procedure for checking it consistent across selection types and between
_s and _u, ensures it is always is performed even when called within the H5S package, and removes the redundant check that would occur when callins H5S_select_adjust_s() from outside the H5S package.
2019-11-18 13:33:36 -06:00