16527 Commits

Author SHA1 Message Date
Allen Byrne
3ee87f72ad HDFFV-9055 Handle H5T_ARRAY types
Create variables just for diff_array function
Whitespace updates
2017-05-16 15:58:17 -05:00
Allen Byrne
858155c19b Merge pull request #519 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '71637634ac96b6167b384ebb461ce3b9ea66b4f8':
  HDFFV-9995 Clarify help text
  HDFFV-10128 Fixed string length with no null fixed
2017-05-16 14:54:53 -05:00
Allen Byrne
71637634ac HDFFV-9995 Clarify help text 2017-05-16 10:16:44 -05:00
Allen Byrne
4f0b92bdd5 HDFFV-10128 Fixed string length with no null fixed 2017-05-16 09:28:49 -05:00
Larry Knox
3e1a06e649 Merge pull request #516 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '56c3ec98207bb6c4b3e6a7b9523c2a1e849879c3':
  HDFFV-10128 add test to check null term Test is another dataset
  HDFFV-10128 Fix null term strings
2017-05-15 17:12:57 -05:00
Vailin Choi
8e8a30bdd4 Merge pull request #515 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to develop
* commit '54dff331778a660824961fdf6359e4eae998a13c':
  Incorporate additional code changes for the H5DOread_chunk patch from GE Heathcare (HDFFV-9934) This is the similar set of changes that was checked in to 1.8 branch: Incorporate the code changes that were missing from the original patch: (1) Additional tests in hl/test/test_dset_opt.c (2) Fix in src/H5Dchunk.c for direct access when an entry is in chunk cache but not dirty Tested on platypus, ostrich, kituo, mayll, osx1010test, moohan, quail, emu.
2017-05-15 13:31:47 -05:00
Allen Byrne
56c3ec9820 HDFFV-10128 add test to check null term
Test is another dataset
2017-05-15 12:33:58 -05:00
Vailin Choi
54dff33177 Incorporate additional code changes for the H5DOread_chunk patch from GE Heathcare (HDFFV-9934)
This is the similar set of changes that was checked in to 1.8 branch:
Incorporate the code changes that were missing from the original patch:
(1) Additional tests in hl/test/test_dset_opt.c
(2) Fix in src/H5Dchunk.c for direct access when an entry is in chunk cache but not dirty
Tested on platypus, ostrich, kituo, mayll, osx1010test, moohan, quail, emu.
2017-05-15 10:25:15 -05:00
Allen Byrne
7078993d63 HDFFV-10128 Fix null term strings 2017-05-12 14:40:39 -05:00
Dana Robinson
5e60a0e10e Merge pull request #512 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop to develop
* commit 'f95ef72a5e9827dfa63e4722938a58a8c9d686c0':
  Merged HDFFV-10187 direct chunk overwrite bugfix to develop from 1.10 branch.
2017-05-11 23:26:06 -05:00
Dana Robinson
f95ef72a5e Merged HDFFV-10187 direct chunk overwrite bugfix to develop from 1.10 branch. 2017-05-11 23:31:57 -04:00
Allen Byrne
a23da99bdb Merge pull request #506 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '0cb8152b8e97d659e076b42340509c41b3919754':
  HDFFV-10186 Need to pull the flag into the script
2017-05-11 09:12:11 -05:00
Allen Byrne
0cb8152b8e HDFFV-10186 Need to pull the flag into the script 2017-05-11 09:03:21 -05:00
Allen Byrne
fcdf2ace7d Merge pull request #503 in HDFFV/hdf5 from ~BYRN/hdf5_adb:bugfix/HDFFV-10186-tbitnopaque-test to develop
* commit 'ec0935a924a84b18b29473b4fcec7c3f4e1aca76':
  HDFFV-10186 xml test also needs endianess aware files
  HDFFV-10186 - h5tools_str_append is not printf
  HDFFV-10186 braces formatting
  Fix reference file contents
  HDFFV-10186 Add endianess to bitfield and fix tests
2017-05-10 16:38:36 -05:00
Larry Knox
46937e9032 Merge pull request #505 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
* commit 'c8a5520d3aa3a526460c81507f2f985dc534b14f':
  Call to H5Dopen has H5dopen2 arguments at line 12704 of test/dsets.c - changed to H5Dopen2 to fix failure with --with-default-api-version=v16 configure option.
2017-05-10 16:10:41 -05:00
lrknox
c8a5520d3a Call to H5Dopen has H5dopen2 arguments at line 12704 of test/dsets.c -
changed to H5Dopen2 to fix failure with --with-default-api-version=v16
configure option.
2017-05-10 14:44:58 -05:00
Allen Byrne
ec0935a924 HDFFV-10186 xml test also needs endianess aware files 2017-05-10 12:45:06 -05:00
Allen Byrne
7dc0c79c54 HDFFV-10186 - h5tools_str_append is not printf 2017-05-10 12:20:15 -05:00
Allen Byrne
dd45c3694f HDFFV-10186 braces formatting 2017-05-10 11:09:55 -05:00
Allen Byrne
772e6e9a7f Fix reference file contents 2017-05-10 11:00:37 -05:00
Allen Byrne
445c805a4c HDFFV-10186 Add endianess to bitfield and fix tests 2017-05-10 10:59:13 -05:00
Allen Byrne
9d50ed5287 Merge pull request #501 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit 'e4e261173f85de6f83651abd6950793d7b930a20':
  HDFFV-10186 more whitespace formatting
2017-05-10 10:46:37 -05:00
Allen Byrne
e4e261173f HDFFV-10186 more whitespace formatting 2017-05-10 10:12:19 -05:00
Allen Byrne
900a110c89 Merge pull request #497 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '4f36f613a6de09d8ec197b7e5a4a72dbdb9417a2':
  HDFFV-10186 Whitespace change Mostly tabs to spaces Remove Modifications comments
2017-05-10 08:48:46 -05:00
Vailin Choi
dc0276a81c Merge pull request #498 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to develop
* commit '8482314d7db83c47947af8ca50457cdb1ddae366':
  Fix for HDFFV-10051 Fix missing declaration for H5D__layout_compact_dirty_test(). Tested on mayll and osx1010test.
2017-05-09 17:34:15 -05:00
Vailin Choi
8482314d7d Fix for HDFFV-10051
Fix missing declaration for H5D__layout_compact_dirty_test().
Tested on mayll and osx1010test.
2017-05-09 17:30:20 -05:00
Allen Byrne
4f36f613a6 HDFFV-10186 Whitespace change
Mostly tabs to spaces
Remove Modifications comments
2017-05-09 16:52:05 -05:00
Vailin Choi
e062a77e0e Merge pull request #494 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to develop
* commit 'd436db6c6efdfe7e9dbe06a642715116ef0eb5e3':
  Fix for the two issues reported in HDFFV-10051 Modifications made based on the review comments from pull request #494 Tested on moohan, mayll, kituo, platypus, ostrich, osx1010test, quail, emu.
  Fix for the two issues reported in HDFFV-10051: (1) Repeated open/close of a compact dataset fails due to the increment of ndims in the dataset structure for every open. --This is done only for chunked dataset via H5D__chunk_set_sizes(). (2) layout "dirty" flag for a compact dataset is not reset properly after flushing the data at dataset close. --Reset the "dirty" flag before flushing the message to the object header via H5O_msg_write(). Tested on moohan, kituo, platypus, ostrich, osx1010test, quail, emu.
2017-05-09 13:18:26 -05:00
Allen Byrne
850a5956c0 Merge pull request #496 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '5263bc9029dcf06779a0ec2b89688912443a4bfa':
  HDFFV-10186 Whitespace changes Mostly replacing tabs with spaces Removed empty mod sections
2017-05-09 12:41:38 -05:00
Allen Byrne
5263bc9029 HDFFV-10186 Whitespace changes
Mostly replacing tabs with spaces
Removed empty mod sections
2017-05-09 10:41:00 -05:00
Vailin Choi
d436db6c6e Fix for the two issues reported in HDFFV-10051
Modifications made based on the review comments from pull request #494
Tested on moohan, mayll, kituo, platypus, ostrich, osx1010test, quail, emu.
2017-05-08 22:14:20 -05:00
Vailin Choi
6a4f1187cc Fix for the two issues reported in HDFFV-10051:
(1) Repeated open/close of a compact dataset fails due to the
increment of ndims in the dataset structure for every open.
--This is done only for chunked dataset via H5D__chunk_set_sizes().
(2) layout "dirty" flag for a compact dataset is not reset
properly after flushing the data at dataset close.
--Reset the "dirty" flag before flushing the message to the object header
via H5O_msg_write().
Tested on moohan, kituo, platypus, ostrich, osx1010test, quail, emu.
2017-05-06 23:40:44 -05:00
Larry Knox
7916b84582 Merge pull request #491 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
* commit '28f4873e7fc93de865c3e180f09d7221569f64ff':
  Update one missed version string.
  Update release_docs/HISTORY-1_10.txt and RELEASE.txt after HDF5 1.10.1 release.
2017-05-05 16:58:26 -05:00
Allen Byrne
58e9796e38 Merge pull request #493 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '6d0d9d46dab559c04bba0b8810a3e0630ce44ad2':
  Fix typo in name of ddl file in command
2017-05-05 16:57:45 -05:00
Allen Byrne
6d0d9d46da Fix typo in name of ddl file in command 2017-05-05 16:54:28 -05:00
lrknox
28f4873e7f Update one missed version string. 2017-05-05 10:47:23 -05:00
lrknox
e2ad2751dc Update release_docs/HISTORY-1_10.txt and RELEASE.txt after HDF5 1.10.1
release.
2017-05-05 10:45:24 -05:00
Allen Byrne
494029c27d Merge pull request #490 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '9076e74d38f10d9d71a41ceeb118777468b6b530':
  Fix name to copy
2017-05-05 10:15:20 -05:00
Allen Byrne
9076e74d38 Fix name to copy 2017-05-05 10:05:59 -05:00
Allen Byrne
b8533e75af Merge pull request #488 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit 'c90f72a0d44ab53d16e0c7979363565dff30cf24':
  Correct name of file to copy
2017-05-04 16:47:45 -05:00
Allen Byrne
c90f72a0d4 Correct name of file to copy 2017-05-04 16:42:32 -05:00
Allen Byrne
e10313d556 Merge pull request #487 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '412f68103ecc9e75a895dd057ad28d0e456f3a58':
  Use correct var types for data
2017-05-04 14:10:37 -05:00
Allen Byrne
412f68103e Use correct var types for data 2017-05-04 13:32:58 -05:00
Allen Byrne
5d921b8fee Merge pull request #486 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '006e56802196ee6a43261aec7027815ad24ad3db':
  Remove duplicate defines
  Add test file to list and fix test typo
  Make test scripts fail if result files are created
2017-05-04 13:15:48 -05:00
Allen Byrne
006e568021 Remove duplicate defines 2017-05-04 11:41:47 -05:00
Allen Byrne
bcaf579ac4 Add test file to list and fix test typo 2017-05-02 15:54:40 -05:00
Allen Byrne
7608b264e4 Make test scripts fail if result files are created 2017-05-02 12:36:02 -05:00
Larry Knox
3b81a29c46 Merge pull request #482 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
* commit 'be49a9422654ac9eec07ffe3599b4a7f7561cdb6':
  Comment out install-exec-hooks to remove libdynlib* files.  Allen did the same for hdf5_1_10 and hdf5_1_10_1 because the hooks don't reliably work.  In the develop branch they are causing make install failures because the autotools' install commands sometimes attempt to chmod these files when they no longer exist.
2017-05-01 22:08:00 -05:00
lrknox
be49a94226 Comment out install-exec-hooks to remove libdynlib* files. Allen did
the same for hdf5_1_10 and hdf5_1_10_1 because the hooks don't reliably
work.  In the develop branch they are causing make install failures
because the autotools' install commands sometimes attempt to chmod these
files when they no longer exist.
2017-04-28 16:37:22 -05:00
Larry Knox
fc4e8ea5ec Merge pull request #481 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '0bf41bec5aab468036f32afb287f224d266edf7a':
  Add extra files to be copied
2017-04-28 10:45:05 -05:00