Commit Graph

11478 Commits

Author SHA1 Message Date
Scot Breitenfeld
3d585fe0fe [svn-r18074] Description:
renamed the fortran constants H5L_LINK_*_F to H5L_TYPE_*_F to be consistent with C as noted in bug 1720
2010-01-08 10:05:07 -05:00
Quincey Koziol
86d40d2265 [svn-r18072] Description:
Bring r18071 from metadata journaling merge branch:

	Refactor local heap routines with changes from metadata journaling
branch, along with other misc. changes as the changes on the metadata journaling
branch are being converged with the current state of the trunk.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.6.2 (amazon) in debug mode
        Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
2010-01-07 17:45:21 -05:00
Larry Knox
27c3c4fc9a [svn-r18068] Add new file config/ibm-aix
Tested with chkmanifest on jam.
2010-01-05 22:27:19 -05:00
Albert Cheng
25b3ba2832 [svn-r18065] Purpose:
Port to AIX 6.1 for RS6000.  Should be the same as PowerPC based AIX.

Tested:
Blue-print of NCSA.
2010-01-04 21:04:39 -05:00
HDF Tester
a65f27f30f [svn-r18059] Snapshot 2010-01-03 07:39:26 -05:00
Albert Cheng
ac5945b412 [svn-r18057] Bug fix: 1192
Description:
Fixed exit code (sometimes return code in Main) to follow the HDF5 standards.

Tested:
Jam, both serial and parallel.
2009-12-26 05:12:49 -05:00
Albert Cheng
f40a245ce2 [svn-r18055] Bug fix: 1192
Description:
Fixed exit code (sometimes return code in Main) to follow the HDF5 standards.

Tested:
H5committested plus serial test in Jam.
2009-12-26 03:36:37 -05:00
Albert Cheng
840e04ab5f [svn-r18051] Bug fix: 1192
Description:
Some exit code (sometimes return code in Main) to follow the HDF5 standards.

Tested:
H5committested plus serial test in Jam.
2009-12-25 07:37:55 -05:00
HDF Tester
06ce6af638 [svn-r18047] Snapshot 2009-12-20 07:32:29 -05:00
Quincey Koziol
5fdc21c611 [svn-r18045] Description:
Slush changes back & forth between trunk, the merging branch and the
metadata journaling branch to level them out to a reasonably common set of code 
to work from for the next set of more significant changes.

Tested on:
        Mac OS X/32 10.6.2 (amazon) w/debug 
        (h5committest not required on this branch)
2009-12-19 19:44:12 -05:00
Quincey Koziol
e66ae8b671 [svn-r18039] Description:
Minor code cleanups, to align better w/ongoing metadata journaling
convergence.

Tested on:
	Mac OS X/32 10.6.2 (amazon) w/debug
	(too minor to require h5committest)
2009-12-19 02:19:07 -05:00
Quincey Koziol
ac446b6131 [svn-r18037] Description:
Bring r18035 from merge_metadata_journaling branch to trunk:

	More "brush clearing" convergence between metadata_journaling branch
and the trunk.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.6.2 (amazon) in debug mode
        Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
2009-12-19 00:40:15 -05:00
Quincey Koziol
de952f3647 [svn-r18035] Description:
More "brush clearing" convergence between metadata_journaling branch
and the trunk.

Tested on:
	Mac OS X/32 10.6.2 (amazon) debug & prod
	(h5committest not required on this branch)
2009-12-18 23:28:42 -05:00
Quincey Koziol
ee27c06366 [svn-r18033] Description:
Correct error in merging Coverity changes in r18011

Tested on:
	None - eyeballed only (very simple)
2009-12-18 23:12:33 -05:00
Quincey Koziol
1bc07c6aae [svn-r18031] Description:
Bring r18030 from merge_metadata_journaling branch to trunk:

	Bring "brush clearing" changes (whitespace & style issues, mostly) from
metadata_journaling branch to the "merging" branch, to converge the trunk and
the metadata_journaling branch.

	Also, some other minor cleanups along the way.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.6.2 (amazon) in debug mode
        Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
2009-12-17 17:21:08 -05:00
Quincey Koziol
77038a8175 [svn-r18030] Description:
Bring "brush clearing" changes (whitespace & style issues, mostly) from
metadata_journaling branch to the "merging" branch, to converge the trunk and
the metadata_journaling branch.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.6.2 (amazon) in debug mode
        Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
2009-12-17 10:07:35 -05:00
Raymond Lu
df2fef9759 [svn-r18028] On Boeing's OpenVMS, the value of EXIT_FAILURE is 268435458.
(The test is in test_exit_definitions.)  Their document says
it's supposed to be 2.  I commented it out for further
consideration.

Tested 1.8 branch on jam - simple change.
2009-12-16 16:17:04 -05:00
Raymond Lu
a428323f90 [svn-r18025] I removed a duplicated line from the read_old function. There were 2 identical calls to
the function H5Fopen.

Tested v1.8 branch on jam and the release 1.8.4 on OpenVMS.
2009-12-16 15:37:53 -05:00
Raymond Lu
93d36eecac [svn-r18022] I added tlinks to testhdf5.
Tested v1.8.4 on OpenVMS.
2009-12-16 15:23:42 -05:00
HDF Tester
dc974e3de2 [svn-r18012] Snapshot 2009-12-13 07:35:57 -05:00
Quincey Koziol
9b2c4bea02 [svn-r18011] Description:
Bring Coverity changes into the trunk: (also other minor cleanups)

r17991:
Fix Coverity items 175 and 176.  Fixed memory leak on error in print_enum in
H5LT.c.

r17993: (r17992 was not a Coverity change)
Close Coverity issue #206: inconsistently checking whether dt->shared was
non-NULL after H5T_alloc() returned a valid 'dt' value (which should guarantee
that dt->shared is valid).

r17994:
Fix Coverity item 149.  Fixed file handle leak on error in H5FD_stdio_open.

r17995:
Fixed Coverity issues 154 to 161:

 Added H5MP_close routine to error handling in the event *mp has not been
 freed before error.

r17996:
Close Coverity issue #126: potentially leaking merged_spans on routine failure.

r17997:
Fix Coverity items 147 and 148.  Fixed resource leaks on error in H5FDloc.c.

r17998:
Coverity issue 269-272:
    Added integer result variable to functions that could return negative.
        Assigned to unsigned after checking.
    Added H5E_BEGIN_TRY block around H5Tclose and removed H5E_THROW in the
        catch block.
    Checked buffer is NULL before free. Changed HGOTO_ERROR outside of the if
        block to H5E_THROW.

r17999:
Close Coverity issue #127: release temporary spans in more generic manner.
(Also add error checking to previous fix)

r18000:
Resolved Coverity issues 211 and 212 in H5T.c. Added comments to ignore
Coverity warning regarding not checking pointer for NULL, as we are using
an assert which catches the issue.

r18001:
Fix Coverity item 146.  Fixed resource leak on error in H5O_layout_copy.

r18002:
Fix Coverity items 143 and 145.  Fixed resource leaks on error in
H5D_compact_copy and H5D_contig_copy.

r18003:
Close Coverity issue #192: close file on error

r18004:
Fix Coverity issue #125: release temporary spans on error

r18005:
Resolved Coverity issues 5, 25, and 83 (in H5T.c):

    Separated embedded functions in order to check for NULL on return of
        H5I_object before passing into H5T_copy.

    Check to see if new_dt is NULL within error handling before
        dereferencing it.

    Ignore Coverity's dead code warnings as the checks that lead to the code
        are machine dependent.

r18006:
Coverity 63,70,73:  Checked result of function before assigning to an unsigned
variable.

r18007:
Coverity 78,79:   added continue statement if H5Pget_filter2 returns negative.

r18008:
Fixed Coverity issue # 138:

    Added support in error handling to free dst pointer (if allocated) on error.

r18009:
Whitespace & coding style cleanup
2009-12-13 00:28:30 -05:00
Raymond Lu
5d0fdb855d [svn-r17985] I put in the bug fix info for #1584. No test is needed. 2009-12-10 11:39:58 -05:00
Quincey Koziol
037dac6997 [svn-r17981] Description:
Abstract "print header" code into separate routine.

Tested on:
    Mac OS X/32 10.6.2 (amazon) w/debug
    (too minor to require h5committest)
2009-12-10 08:43:25 -05:00
Quincey Koziol
34d14bdf89 [svn-r17980] Description:
Bring Coverity changes into the trunk: (also other minor cleanups)

r17955:
Fix Coverity item 24.  Add missing error condition to
H5AC_ext_config_2_int_config.

r17956:
Fix Coverity item 24.  Improve error checking in H5A_compact_build_table_cb.

r17957:
Fix Coverity item 150.  Fix warning in H5A_compact_build_table_cb.

r17958:
Fix Coverity item 117.  Fix error handling in H5B_shared_new.

r17959:
Fix Coverity item 209.  Added an assertion for leaf->shared in
H5B2_cache_leaf_dest.

r17960:
Fix Coverity item 208.  Added an assertion for internal->shared in
H5B2_cache_internal_dest.

r17961:
Fix Coverity item 89.  Reworked the code to avoid array overrun in
H5C__autoadjust__ageout__insert_new_marker.

r17962:
Fix for coverity Resource_leak 195,203,204,205.

r17963:
Fix Coverity item 44.  Prevented potential NULL dereference in H5D_btree_debug.

r17964:
Fix Coverity issues #197, 198 & 199: memory not being released.  (Also
clean up other resource leaks in nearby and/or similar code).

r17965:
Fix Coverity issue #151: release resources on error

r17966:
Fix Coverity issue #187: Remove leftover code remnant from prior bugfix
which was causing resource leak of open files.

r17967:
Fixed Coverity issues # 193 & 194.  Removed unnecessary memory allocation and
added comparison of length of path parameter to the size of the destination
buffer in h5import.h/h5import.c.

r17968:
Fix Coverity item 144.  Fixed memory leak on error in H5D_chunk_copy.

r17969:
Fix for coverity Resource_leak #196.

r17970:
Coverity 167-173:
Initialized pointer of buffers.
In error handling, closed types and free memory.

Tested on:
    FreeBSD/32 6.3 (duty) in debug mode
    FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
    Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
        w/C++ & FORTRAN, w/threadsafe, in debug mode
    Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
        w/C++ & FORTRAN, in production mode
    Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
        w/szip filter, in production mode
    Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
    in production mode
    Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
    Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
    Mac OS X/32 10.6.2 (amazon) in debug mode
    Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
        in production mode
2009-12-10 07:36:56 -05:00
Quincey Koziol
adce7dfd84 [svn-r17978] Description:
Simplify checking for detecting variable-length strings.

Tested on:
    Mac OS X/32 10.6.2 (amazon) debug & production
    Too minor to require h5committest
2009-12-09 13:16:07 -05:00
Raymond Lu
58c8ac33a8 [svn-r17977] Bug fix for 1584. H5Tdetect_class said a VL string is a string type. But when it's in a
compound type, it says it's a VL type.  We want to tell user a VL string is a string.  But
internally we treat it as a VL type.  I added a flag as a parameter of H5T_detect_class.  
It tells whether the caller is the public function H5Tdetect_class.  I also added a 
detection for VL string in the private function for the compound case (or array or nested 
VL type).

Tested on jam and amani - I tested the same change for 1.8 with h5committest.
2009-12-09 12:06:02 -05:00
HDF Tester
94a00c768c [svn-r17973] Snapshot 2009-12-07 09:18:34 -05:00
Quincey Koziol
fda704377e [svn-r17971] Description:
Allow the core VFD to properly support opening backing store files through
symbolic links and have the external links in the file be treated in the same
way as for the sec2 driver.

Tested on:
    FreeBSD/32 6.3 (duty) in debug mode
    FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
    Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
        w/C++ & FORTRAN, w/threadsafe, in debug mode
    Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
        w/C++ & FORTRAN, in production mode
    Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
        w/szip filter, in production mode
    Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
        in production mode
    Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
    Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
    Mac OS X/32 10.6.2 (amazon) in debug mode
    Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
        in production mode
2009-12-06 21:51:54 -05:00
Quincey Koziol
fb1059e507 [svn-r17953] Description:
Bring Coverity changes into the trunk:

r17877:
Error 266: Uninitialized memspace set to -1. Changed malloc and free to HDmalloc and HDfree. Removed unused dtype var.

r17878:
Error 265: Uninitialized mem_space set to -1. Changed malloc and free to HDmalloc and HDfree. 
Error 267: Uninitialized smspace set to -1. Changed malloc and free to HDmalloc and HDfree.

r17879:
Error 242: Uninitialized aid set to -1. 
Error 243: Uninitialized sid set to -1. 
Uninitialized tid set to -1 for consistency

r17880:
Error 242: reinitialized aid to -1 after close to be ready for reuse. 
Error 243: reinitialized sid to -1 after close to be ready for reuse. 
reinitialized tid to -1 for consistency after close to be ready for reuse.

r17881:
use valgrind to check there is a memory leak. The fix is to free ptrstr in line 5838 at xml_dump_group() of h5dump.c after it is used. run the valgrind after the fix, no memory leak for that part of the code.

r17882:
Fix Coverity items 256 and 269.

r17883:
Error 222-230: initialized hid_t vars to -1 after close to be ready for reuse. 
Also added H5Tclose for tid in gent_bigdims

r17884:
Bug fix (Coverity run2, view 23, dead code)
(this is pair-program done by Albert, Elena and Larry).

Confirmed and fixed the deadcode in hyperslab read branch of function
diff_datasetid.
(Discovered other bad code that diff_datasetid() should be recoded.  
Bug 1693 is entered for this.)

r17906:
Fix Coverity item 260.

r17907:
262: Initialized hid_t's dtype, dtype_tmp and file to -1. Initialized H5T_t * dt to NULL.

r17908:
Fix Coverity item 261.

r17909:
Fix Coverity item 248.

r17910:
Revise fix for Coverity item 248.

r17911:
Resolved coverity issues #s 263, 162, 163, 164. All issues in dsets.c. Initialized fid and did hid_t's. filter_corrupt function was returning in the middle of an if statement, bypassing free calls. Updated error handling to free buffers and hid_t's appropriately.

r17912:
(done by Larry and Albert)
Cleanup Coverity view warnings (#231-241) about
using uninitialized variables.  Initialized all
of them.

r17913:
Resolved issue 251 and 264. Initialized tid2 to -1 and initialized buffers that were freed in case of an error.

r17914:
Resolved coverity issues 66, 220, and 221: 

66: Negative Return assignment ignored

220,221: Initialized hid_t's.

r17915:
Fix Coverity item 247.

r17916:
Fix Coverity item 246.

r17917:
Fix Coverity item 245.

r17918:
Fix Coverity item 244.

r17919:
Coverity Issue #84: Moved asserts in H5T_cmp to the top of the function, and converted them to HDassert. Coverity complaining about using potentially NULL pointer without checking it. Want to see if Coverity will accept Assertions as acceptable checking before using the value. 

Tested on:
    FreeBSD/32 6.3 (duty) in debug mode
    FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
    Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
        w/C++ & FORTRAN, w/threadsafe, in debug mode
    Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
        w/C++ & FORTRAN, in production mode
    Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
        w/szip filter, in production mode
    Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
        in production mode
    Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
    Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
    Mac OS X/32 10.6.2 (amazon) in debug mode
    Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
        in production mode
2009-12-03 14:11:29 -05:00
Quincey Koziol
94a17b8662 [svn-r17951] Description:
Skip symlink test for external links when not using the sec2 VFD.

Tested on:
    Mac OS X/32 (amazon) w/various VFDs
    (too minor for h5committest)
2009-12-03 10:39:14 -05:00
Scot Breitenfeld
96f8c1a6a8 [svn-r17949] Description:
Added comments to subroutine arguments.

Tested: jam
2009-12-02 15:45:54 -05:00
Allen Byrne
88a248f8d9 [svn-r17948] Added new H5SMmessage.c file to project files
Tested: Windows
2009-12-02 14:44:22 -05:00
Quincey Koziol
6029983f3e [svn-r17945] Description:
Add missing debugging context create/destroy callbacks.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.6.2 (amazon) in debug mode
        Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
2009-12-01 12:33:08 -05:00
Quincey Koziol
71a9d50725 [svn-r17943] Description:
Finish refactoring v2 B-trees so that they can have client callback
context provided to the encode/decode callbacks.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.6.2 (amazon) in debug mode
        Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
2009-12-01 11:45:27 -05:00
Quincey Koziol
1bc79f977b [svn-r17939] Description:
Handle external links from symlinked files by adding another check to
look for "child" files for links from the actual location of the "parent" file,
instead of from the location of the symlink.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.6.2 (amazon) in debug mode
        Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
2009-12-01 08:39:05 -05:00
Jonathan Kim
77b493eea3 [svn-r17938] Purpose:
Fix potential problem similar to Bug1672 (getting garbage values)

Description:
    This will resolve the potential problem like Bug1672 when comparing 
    attributes. It improves the performance by not calling diff_array 
    twice. (diffing time in half). Little clean up on comment lines.
    Refer to the Bug fix 1672. (also svn revision 17905 on trunk) 
	
Tested on:
    linux32 (jam) , linux64 (almani), solaris (linew)
2009-11-30 16:25:41 -05:00
Albert Cheng
497a6fcc85 [svn-r17936] Updated AIX compilers information. 2009-11-27 11:12:18 -05:00
Albert Cheng
d65fa708c0 [svn-r17934] Updated with new ibm compiler configure changes. 2009-11-26 13:10:28 -05:00
Albert Cheng
e10e292a42 [svn-r17931] Enhancement:
Added the xlc-* and mpcc_r-* BASENAME patterns to be recognized as IBM
compilers so that the ibm compiler options can be added properly.
This allows non-system-default compiler command names (e.g. xlc-m.n.k.l)
be recognized.
(need to figure out a better way to recognize it is an IBM compiler
and its version information.)

Tested: LLNL AIX machine.
2009-11-26 12:41:55 -05:00
Allen Byrne
7f496f19b8 [svn-r17927] Add definition for HDlstat for windows.
Tested: windows
2009-11-25 15:28:21 -05:00
Quincey Koziol
b7e35aef0e [svn-r17924] Description:
Add detection for POSIX lstat() routine to configure script (mostly for
non-UNIX/Linux machines) and add macro wrapper for it.

	Alphabetatize the system/library calls we test for, to make them easier
to read.

	Removed the sigaction() detection & macro wrappers, since it's not
used by the distribution currently.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.6.2 (amazon) in debug mode
        Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
2009-11-23 16:34:51 -05:00
Quincey Koziol
0ced243b9a [svn-r17922] Description:
Improve error reporting for read/write failures.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.6.2 (amazon) in debug mode
        Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
2009-11-23 13:53:27 -05:00
Jonathan Kim
8bcc914263 [svn-r17905] Purpose:
Fix Bug1672 - Display garbage value on LE machine for BE data.

Description:
	Casuing by calling diff_dataset twice when -r or no option was given.
	Change to call it once which fix the problem. 
	It also improves the performance. (diffing time in half)
	According further test, it also occurred on BE machine as well and it 
	seems occruing only with the BE data attached to Bugzilla. 
	Don't know how the file was created. Anyway this fix will prevent 
	from diffing with garbage values in similiar potential case. 
	
Tested on:
	linux32 (jam) , linux64 (almani), solaris (linew)
2009-11-20 13:56:01 -05:00
HDF Tester
5a821b959b [svn-r17902] Snapshot 2009-11-17 09:27:25 -05:00
Quincey Koziol
674c2def44 [svn-r17899] Description:
*sigh* Bring along another updated file after recent object header
message info update.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.6.2 (amazon) in debug mode
        Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
2009-11-16 22:04:12 -05:00
Quincey Koziol
c88695da2e [svn-r17898] Description:
Regenerate h5stat testfile after recent corrections to object header
message info.

Tested on:
	FreeBSD/32 6.3 (duty)
	(too minor to require h5committest)
2009-11-16 21:43:53 -05:00
Quincey Koziol
aedecd83a1 [svn-r17897] Description:
Correct ordering of "unknown" object header message in lists of
messages.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
	(too minor to require h5committest)
2009-11-16 15:55:01 -05:00
Quincey Koziol
4fe33eda1c [svn-r17895] Description:
Correct & simplify client callback context for extensible and fixed
array data structures.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.6.2 (amazon) in debug mode
        Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
2009-11-15 23:17:45 -05:00
Quincey Koziol
6d5d4ed1d1 [svn-r17893] Descrption:
Remove old shim H5B2 routines from refactoring, rename new routines to
old routine names and switch all users of the H5B2 interface back to the old
routine names now that the switch to using the more current open -> <operation>
-> pattern is used for all the H5B2 code.  This is the final change before 
adding a context to the H5B2 client encode/decode callbacks.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.6.2 (amazon) in debug mode
        Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
2009-11-14 22:38:58 -05:00
Quincey Koziol
699a5ddec4 [svn-r17891] Description:
Switch the shared object header messages code to use the refactored
v2 B-tree routines.  (this should be the interface that is using them)

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.6.2 (amazon) in debug mode
        Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
2009-11-13 23:48:37 -05:00