Commit Graph

1696 Commits

Author SHA1 Message Date
Quincey Koziol
f75d422410 [svn-r15746] Description:
Add support for extensible array "super block".

Tested on:
        Mac OS X/32 10.5.5 (amazon) in debug mode
        Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
2008-10-01 14:24:32 -05:00
Pedro Vicente Nunes
1d625572d3 [svn-r15721] Added a file with user block data to be used by the h5repack windows shell script only Note: for the unix shell script this file is not used 2008-09-29 14:02:20 -05:00
Pedro Vicente Nunes
9460d5493b [svn-r15705] bug fix
make a test generate a LE output for test portability

tested: linux, solaris
2008-09-26 14:14:21 -05:00
Pedro Vicente Nunes
a6e2a45d15 [svn-r15699] Bug fix #1281
The TEXTFPE was described in the usage (read floats in scientific notation) but was not implemeneted.
Solution:
remove TEXTFPE from the help system and have the TEXTFPE input type do
the same thing as TEXTPF currently does to support backwards compatibility (the format read for both TEXTFPE and TEXTPF is %f)
added a test

tested: windows, linux
2008-09-25 15:38:21 -05:00
Pedro Vicente Nunes
d0859bb174 [svn-r15678] formatted code
tested: windows, linux
2008-09-22 13:40:38 -05:00
Quincey Koziol
071e281a3d [svn-r15676] Description:
Centralize all macros for declaring "magic numbers"/signatures for
objects in the file into src/H5Fprivate.h, so it's easier to know what values
have already been defined, etc.

Tested on:
        Mac OS X/32 10.5.4 (amazon) in debug mode
        Mac OS X/32 10.5.4 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
2008-09-22 12:13:21 -05:00
Quincey Koziol
00bd6ae9c2 [svn-r15674] Description:
Add base support for extensible array "data blocks" to code, tests and
h5debug.

Tested on:
        Mac OS X/32 10.5.4 (amazon) in debug mode
        Mac OS X/32 10.5.4 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
2008-09-22 10:22:03 -05:00
Neil Fortner
6d28e06f30 [svn-r15668] Purpose: Add feature requested in bug #1282
Description: Adds capability to h5ls to traverse external links when the -r
(recursive) option is given.  Changes to the way absolute path names are patched
in h5trav.c.  Changes to the way recursive traversal starting from a non-root
group is handled (which also fixes some preexisting issues).  Tests added for
these cases.

Tested: kagiso, smirom, linew (h5committest)
2008-09-21 13:35:43 -05:00
Pedro Vicente Nunes
205b9019cf [svn-r15664] fix comments
tested: linux
2008-09-19 15:06:17 -05:00
Pedro Vicente Nunes
6eb624a09d [svn-r15653] cleaned warnings
tested: windows, linux
2008-09-18 13:08:04 -05:00
Pedro Vicente Nunes
fffa1adc9a [svn-r15652] Cleaned compiler warnings
Bug fix: do not print print compression ratio when the requested filter is NONE

Tested: windows, linux
2008-09-18 11:06:28 -05:00
Pedro Vicente Nunes
c3b40626a0 [svn-r15650] Cleaned compiler warnings
Bug fix: change the options block size variable from int to hsize_t, to match the H5Pset_userblock call

Tested: windows, linux
2008-09-18 09:44:21 -05:00
Pedro Vicente Nunes
efb5075937 [svn-r15643] add a failure condition of writing user block
Tested: windows, linux
2008-09-17 11:14:35 -05:00
Pedro Vicente Nunes
80693ba5de [svn-r15636] formatted code
tested: windows, linux
2008-09-16 15:37:45 -05:00
Pedro Vicente Nunes
2cd16f4c74 [svn-r15635] add info regarding user block to usage
tested: windows, linux
2008-09-16 14:49:43 -05:00
Pedro Vicente Nunes
54e35b67cf [svn-r15634] Add a default user block size of 1024 when none is given
Tested: windows, linux
2008-09-16 14:42:51 -05:00
Quincey Koziol
bdd7d59902 [svn-r15628] Description:
Remove trailing whitespace from C/C++ source files, with the following
script:

    foreach f (*.[ch] *.cpp)
        sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f
    end

Tested on:
    Mac OS X/32 10.5.5 (amazon)
    No need for h5committest, just whitespace changes...
2008-09-16 10:52:51 -05:00
Quincey Koziol
5fb061e46e [svn-r15617] Description:
Clean up how v2 B-tree (and extensible array) classes are determined in
h5debug.

	Add support for extensible array headers and index blocks to h5debug

Tested on:
        Mac OS X/32 10.5.4 (amazon) in debug mode
        Mac OS X/32 10.5.4 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
2008-09-11 15:16:05 -05:00
Pedro Vicente Nunes
42e4838163 [svn-r15557] bug fix: the -m flag add a long description of "--threshold" that was changed to "--minimum" because "--threshold" now refers to the threshold parameter for H5Pset_alignment
tested: linux
2008-08-29 15:06:10 -05:00
Pedro Vicente Nunes
cf05c2d762 [svn-r15556] Check options for H5Pset_alignment.
threshold is zero default (a valid value) but zero is not a valid alignment

tested: windows, linux
2008-08-29 14:54:21 -05:00
Pedro Vicente Nunes
f384b17625 [svn-r15551] 1) There are 2 new command line parameters for h5repack. Together they allow a call to H5Pset_alignment to be made
-t T, --threshold=T     Threshold value for H5Pset_alignment
   -a A, --alignment=A     Alignment value for H5Pset_alignment

2) bug fix
the printing of the dataset name was not done for references (verbose mode)

tested: windows, linux
2008-08-28 14:47:26 -05:00
Pedro Vicente Nunes
d78821d619 [svn-r15547] fix typos
tested: linux
2008-08-27 10:39:24 -05:00
Pedro Vicente Nunes
64842512fd [svn-r15527] turn off a debug print flag
tested: windows, linux
2008-08-25 11:05:00 -05:00
Pedro Vicente Nunes
0c8cee593f [svn-r15526] userblock options
only write the user block of a pre-existing file with user block in case there is no input user block file

tested: windows, linux
2008-08-25 10:57:14 -05:00
Pedro Vicente Nunes
a72dc6c92c [svn-r15521] #1184
Add a userblock to an HDF5 file during the repack.  The user gives  
give a filename and userblock size as command line parameters to  
h5repack and the contents of that file are stored in the  
userblock for the HDF5 file created by h5repack.

New flags to handle this -u and -b
Tested : windows, linux
2008-08-22 10:53:07 -05:00
Pedro Vicente Nunes
5f7de91688 [svn-r15509] bug fix
when comparing attributes, a type ID was not properly closed 

solution: close the Id on the iteration and continue instead of goto out of the cycle
2008-08-21 14:15:05 -05:00
Quincey Koziol
507a211257 [svn-r15462] Description:
Correct compiler warnings from Visual Studio.

Tested on:
    Mac OS X/32 10.5.4 (amazon) w/FORTRAN & C++
    (Too minor to require full h5committest)
2008-08-12 07:46:40 -05:00
Neil Fortner
4f61812180 [svn-r15458] Purpose: Modify the library to take the proper action when files with incorrect
datatype versions are encountered.

Description: The library now recognizes some problems with datatype versions in
H5O_decode_helper(), and, if not performing strict format checks, automatically
corrects them.  Framework added for other message decode routines to
automatically correct file errors.  Datatype version information added to
h5debug.

Tested: kagiso, smirom, linew (h5committest)
2008-08-11 10:16:34 -05:00
Pedro Vicente Nunes
a5de140500 [svn-r15446] bug fix
http://bugzilla.hdfgroup.uiuc.edu/show_bug.cgi?id=788
don't print array indices for regions

tested: windows, linux
2008-08-07 10:15:04 -05:00
Pedro Vicente Nunes
c3bdc28062 [svn-r15445] added some comments
tested: windows, linux
2008-08-07 08:09:35 -05:00
Peter Cao
2b3a491ee1 [svn-r15439] Add the following patch
===
The following patch to h5copy.c on or near line 173 makes the
tool substantially more useful...
     *flag = (*flag) | fla;
Because the command-line option parsing permits multiple '-f' arguments,
this will have the effect of or'ing the flags together so one can do
someting like....

~/tmp/hdf5-1.8.1/tools/h5copy/h5copy -i multi_ucd3d.h5 -s block5 -o gorfo -d foo -f shallow -f soft

Mark C. Miller, Lawrence Livermore National Laboratory
email: mailto:miller86@llnl.gov
===
2008-08-06 13:16:44 -05:00
Scott Wegner
e47c44c04a [svn-r15438] Purpose: Bring the Windows H5pubconf.h up-to-date
Description:
This commit is a major update to the Windows-maintained H5pubconf.h file.  This file is statically-distributed because Windows cannot generate it dynamically as other platforms do.  Previously, our Windows version contained a minimal subset of the macro definitions required.  To update, I've gone through each macro (based on kagiso's output), and tested for the correct value on Windows.  This allows us to better target code based on feature flags.  It should also be easier to update in the future as changes are made to the configure script.

This commit also contains one small bug fix in h5ls.c.  Some Windows-specific code was missing a local variable definition.  The bug went unnoticed because Windows didn't define the feature flag correctly.

I've also made changes to the h5vers script.  Whenever the version string is incremented (automatically by h5test after a snapshot), the strings in H5pubconf.h will also be updated.

Tested:
VS2005 on WinXP (32- and 64-bit)
VS.NET on WinXP 32-bit
h5vers tested under Cygwin
2008-08-06 12:18:47 -05:00
Pedro Vicente Nunes
8ee8a3fde6 [svn-r15432] bug fix
the compression ratio was being printed for cases where a layout was requested and not a filter

tested: windows, linux
2008-08-05 10:34:12 -05:00
Pedro Vicente Nunes
422ac99509 [svn-r15431] added the h5diff "contents" mode to the h5diff calls in the h5repack test
tested: windows, linux
2008-08-05 10:07:12 -05:00
Pedro Vicente Nunes
6787ef71a2 [svn-r15428] http://bugzilla.hdfgroup.uiuc.edu/show_bug.cgi?id=1170
Summary: when using h5diff to compare the results of h5repack (or other tools that copy one HDF5 file to another), a new option is needed to allow h5diff to make an "absolute" comparison of the 2 files. This is the "contents" mode explained in the usage below.

If this mode is present, objects in both files must match (must be exactly the same). If this does not happen, the tool returns an error code of 1 (instead of the success code of 0)

Changes to the h5repack test script: the call to h5diff was changed to include -c (maintaining the previous -q). 

tested: windows, linux, solaris
2008-08-04 16:13:16 -05:00
Pedro Vicente Nunes
5a752d6e90 [svn-r15421] bug fix
the parsing of the command line strings for the shared object header message type was not being done correctly (strcmp)
fix: substituted by strncmp

tested: windows, linux
2008-07-28 16:08:34 -05:00
Neil Fortner
9139c12ea0 [svn-r15337] Unintended change to h5dump.c. Reverted. 2008-07-08 11:49:17 -05:00
Neil Fortner
78d22e2c44 [svn-r15335] Fixed incorrect error message in H5Pset_fletcher32:
"unable to add deflate filter to pipeline"
->
"unable to add fletcher32 filter to pipeline"

Tested: kagiso
2008-07-08 11:19:52 -05:00
Vailin Choi
1501afca83 [svn-r15320] Update the test files for h5stat.
h5committested.
2008-07-03 16:51:28 -05:00
Pedro Vicente Nunes
5bf91156a7 [svn-r15315] remove h5jam files 2008-07-03 08:37:46 -05:00
Pedro Vicente Nunes
89bb6df86e [svn-r15314] moved h5jam test files to tools/h5jam/testfiles
tested: linux
2008-07-03 08:32:39 -05:00
Pedro Vicente Nunes
cb7a01f5ce [svn-r15292] moved h52jpeg to /hl/tools/h52jpeg
tested: linux
2008-06-28 16:06:35 -05:00
Pedro Vicente Nunes
e31678c3a2 [svn-r15291] Implementation of generating more use cases (datasets of several types) for the test generator program and file
Implementation of transforming 2D datasets with integer and float classes to 8bit acceptable by the jpeg library.

tested: windows, linux
2008-06-27 14:15:53 -05:00
Pedro Vicente Nunes
a0dbf6ec46 [svn-r15280] code cleaning (for some reason svn has been duplicating blocks of code) 2008-06-25 16:12:17 -05:00
Pedro Vicente Nunes
88982c9301 [svn-r15279] more code cleaning 2008-06-25 16:08:48 -05:00
Pedro Vicente Nunes
604810e35c [svn-r15278] code cleaning and comments 2008-06-25 16:02:02 -05:00
Pedro Vicente Nunes
301c5fd218 [svn-r15277] added code for reading an image type from the command line
added a new test run for the shell script with image name specified

tested: windows, linux
2008-06-25 15:44:51 -05:00
Pedro Vicente Nunes
640e7a9bab [svn-r15276] added the code for using an image name from the command line
tested: windows, linux
2008-06-25 14:49:31 -05:00
Pedro Vicente Nunes
efc8bb49b3 [svn-r15251] Moved all h5copy testfiles from /tools/testfiles to tools/h5copy/testfiles
tested: linux
2008-06-20 10:44:45 -05:00
Pedro Vicente Nunes
91a0ec7b08 [svn-r15247] Moved all h5repack testfiles from /tools/testfiles to tools/h5repack/testfiles
tested: linux
2008-06-20 09:17:16 -05:00