Commit Graph

19704 Commits

Author SHA1 Message Date
Dana Robinson
0cf52525d5 H5A__free() was renamed to H5A__shared_free() and now requires
attr->shared to not be NULL.
2019-06-11 14:14:13 -07:00
M. Scot Breitenfeld
893641990a move the vol_info to an optional parameter 2019-06-11 14:28:10 -05:00
Dana Robinson
3fd4f270fd Merge branch 'h5dump_memory_bug' of https://bitbucket.hdfgroup.org/scm/~derobins/hdf5_der into h5dump_memory_bug 2019-06-11 11:03:04 -07:00
Dana Robinson
c4ee9ef7c0 Fixed a memory issue where unfreed shared attribute dataspace memory
tripped an assert in our memory sanity checks.

Fixes HDFFV-10774.
2019-06-11 10:59:41 -07:00
Dana Robinson
2bd041f878 Added H5Fdelete call and VOL support (but no VFD/native implementation). 2019-06-11 09:04:23 -07:00
Dana Robinson
5098894ffd Fixed a memory issue where unfreed shared attribute dataspace memory
tripped an assert in our memory sanity checks.

Fixes HDFFV-10774.
2019-06-11 04:09:27 -07:00
Dana Robinson
48b0ff7724 Merge pull request #1721 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:release_fixes to develop
* commit 'a668acfc6cb541cc6afa63f964af3d808d058883':
  Minor tweaks to the VOL function comments to bring them in line with the RM.
2019-06-06 14:37:07 -05:00
Dana Robinson
a668acfc6c Minor tweaks to the VOL function comments to bring them in line with the
RM.
2019-06-06 11:06:04 -07:00
Larry Knox
54a07f556c Add options to enable or disable building tools and tests. The default
is enabled for each.
2019-06-05 23:20:01 -05:00
Larry Knox
f6b15437dd Merge pull request #1720 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
* commit '931abe94244c94e106835250e2f723f634a61c8c':
  Move set (MAX_PROC_COUNT 8) back to HPC options files.
  Move check for MPI defined to enable parallel from options scripts in HPC to config/cmake/HDF5options.cmake.
2019-06-05 17:19:19 -05:00
Larry Knox
931abe9424 Move set (MAX_PROC_COUNT 8) back to HPC options files. 2019-06-05 16:44:10 -05:00
Larry Knox
c64bfbd8a0 Move check for MPI defined to enable parallel from options scripts in HPC to config/cmake/HDF5options.cmake. 2019-06-05 16:35:04 -05:00
Allen Byrne
d3a6a9ed8f Merge pull request #1715 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '1ecce0e9bbc07cb3eb6f6bc1fca9d42c9e9c8176':
  Fix minor issues
  Update macro
  Java formatting of args
2019-06-05 15:06:53 -05:00
Dana Robinson
b31a53bfcb Merge pull request #1719 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:vipl to develop
* commit 'a18727bc77c90a9925cabbde8d8ec46c757c6254':
  Added a VOL initialization property list type.
2019-06-05 15:04:06 -05:00
Dana Robinson
cb82b6c222 Merge pull request #1718 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:release_fixes to develop
* commit '9557087c0ed7811301610155654bf58d6583e38c':
  Minor warning fixes: * Fixed an error return value in H5Aint.c (NULL --> FAIL) * Added H5VL_FILE_GET_FILENO to H5trace.c
2019-06-05 11:26:12 -05:00
Dana Robinson
a18727bc77 Added a VOL initialization property list type. 2019-06-05 04:34:36 -07:00
Dana Robinson
9557087c0e Minor warning fixes:
* Fixed an error return value in H5Aint.c (NULL --> FAIL)
* Added H5VL_FILE_GET_FILENO to H5trace.c
2019-06-05 04:32:08 -07:00
Vailin Choi
82f656aed0 Merge pull request #5 in ~VCHOI/my_third_fork from develop to bugfix/new_shutdown_fsm
* commit '66699f2c7d889e725ced0fba579621ef97726b41': (49 commits)
  Minor fixes/improvements for VDS performance improvement (HDFFV-10693).
  Refactor H5S__hyper_project_intersection to operate directly on span trees, improving performance and removing the conditionn that the extents be equal.
  Refactor H5S__hyper_project_intersection to operate directly on span trees, improving performance and removing the conditionn that the extents be equal.
  Added code that disallows unregistering the native VOL connector.
  Rename H5VL_ID_GET_NAME to H5VL_OBJECT_GET_NAME
  Correct message command syntax
  Assign NULL to func_name/file_name/desc error entry pointers when clearing error stack
  Avoid clearing error stack when calling H5Eget_msg()
  Reorder lines in HDF5config.cmake so that additions to end of $HPC-HDF5options scripts will take precedence.
  updated -E option
  remove -M option
  added -M HPC to ctest command
  fixed missing paralle test
  Adding cross-compilation for theta (ANL) and qsub (COBALT) batch controls.
  Add note about CMake and spaces in paths
  Putting ctest command in variable CMD did not work for skipping failing tests.
  Code improvement Description:     Fixed potential division by zero occurrences and changed an assert to     if statement. Platforms tested:     Linux/64 (jelly)     Linux/64 (platypus)     Darwin (osx1011test)
  Combine "collective group and dataset write" and "independent group and dataset read" tests into one test.  The second test is dependent on the file created by the first test, and will not pass when run by itself.
  Add final list of single testphdf5 tests
  Pull a test from default testphdf5
  ...
2019-06-04 15:44:08 -05:00
Neil Fortner
66699f2c7d Merge pull request #1717 in HDFFV/hdf5 from ~NFORTNE2/hdf5_naf:develop to develop
Complete rework of H5S__hyper_project_intersection. Addresses VDS performance issues raised in HDFFV-10693.

* commit 'd3e242eba1ba98726ed64b14e75f6adee724bea7':
  Minor fixes/improvements for VDS performance improvement (HDFFV-10693).
  Refactor H5S__hyper_project_intersection to operate directly on span trees, improving performance and removing the conditionn that the extents be equal.
  Refactor H5S__hyper_project_intersection to operate directly on span trees, improving performance and removing the conditionn that the extents be equal.
2019-06-04 11:06:23 -05:00
Binh-Minh Ribler
c9ae1cf557 Merge pull request #1693 in HDFFV/hdf5 from ~BMRIBLER/hdf5-bmr:develop to develop
* commit '8a57a683391eed79aca80a7325ef152bb76ad0a6':
  Code improvement Description:     Fixed potential division by zero occurrences and changed an assert to     if statement. Platforms tested:     Linux/64 (jelly)     Linux/64 (platypus)     Darwin (osx1011test)
2019-06-03 13:16:02 -05:00
Neil Fortner
d3e242eba1 Merge branch 'develop' of ssh://bitbucket.hdfgroup.org:7999/~nfortne2/hdf5_naf into develop 2019-06-03 12:48:02 -05:00
Neil Fortner
45daa3d168 Minor fixes/improvements for VDS performance improvement (HDFFV-10693). 2019-06-03 12:42:22 -05:00
Allen Byrne
1ecce0e9bb Fix minor issues 2019-06-03 10:45:20 -05:00
Neil Fortner
988d6d0844 Refactor H5S__hyper_project_intersection to operate directly on span trees, improving performance and removing the conditionn that the extents be equal. 2019-05-31 19:32:35 -05:00
Neil Fortner
35a8a549f6 Refactor H5S__hyper_project_intersection to operate directly on span
trees, improving performance and removing the conditionn that the
extents be equal.
2019-05-31 19:26:56 -05:00
Allen Byrne
94d3aa7166 Update macro 2019-05-31 12:33:50 -05:00
Allen Byrne
748da4d3e2 Java formatting of args 2019-05-30 15:56:02 -05:00
Dana Robinson
4af633d1c4 Merge pull request #1714 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:H5VLunregister_native to develop
* commit '0afb76228e16e63d72a7dbacdbb894d34fe29722':
  Added code that disallows unregistering the native VOL connector.
2019-05-24 16:04:47 -05:00
Dana Robinson
0afb76228e Added code that disallows unregistering the native VOL connector. 2019-05-24 13:39:45 -07:00
Dana Robinson
d5a8b2a80c Split VOL connector routines into separate headers:
* H5VLconnector.h for terminal connector things
* H5VLconnector_passthru.h for passthrough connector things

Note that these headers are arranged such that they are included in
hdf5.h so VOL connectors only need to include that. The separation into
multiple headers is mainly for readability.
2019-05-24 02:22:08 -07:00
Jerome Soumagne
e1879a23ae Merge pull request #1706 in HDFFV/hdf5 from ~JSOUMAGNE/hdf5:topic_getloc to develop
* commit '982ed75720d7dece10623868cda22c46908baebe':
  Rename H5VL_ID_GET_NAME to H5VL_OBJECT_GET_NAME
2019-05-23 13:51:56 -05:00
Jerome Soumagne
982ed75720 Rename H5VL_ID_GET_NAME to H5VL_OBJECT_GET_NAME
Implement native H5VL_OBJECT_GET_NAME by addr
2019-05-23 13:48:04 -05:00
M. Scot Breitenfeld
2c79243111 added H5Pset_vol 2019-05-22 14:09:17 -05:00
Jordan Henderson
f37a17a6ce Merge pull request #1709 in HDFFV/hdf5 from ~JHENDERSON/hdf5:develop to develop
* commit '802b2927254b1de163589b1e4eaced47ee81ad07':
  Assign NULL to func_name/file_name/desc error entry pointers when clearing error stack
  Avoid clearing error stack when calling H5Eget_msg()
2019-05-21 09:51:36 -05:00
Allen Byrne
2717a0da8b Merge pull request #1710 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '0b086c3db2c6cd376b7bffb3236df1ef158ae80d':
  Correct message command syntax
  Add note about CMake and spaces in paths
2019-05-19 10:59:14 -05:00
Allen Byrne
0b086c3db2 Correct message command syntax 2019-05-17 15:14:20 -05:00
Jordan Henderson
802b292725 Assign NULL to func_name/file_name/desc error entry pointers when clearing error stack 2019-05-17 10:49:27 -05:00
Jordan Henderson
04f171d0cb Avoid clearing error stack when calling H5Eget_msg() 2019-05-17 10:48:04 -05:00
M. Scot Breitenfeld
4673a34825 added vol connector 2019-05-16 16:22:05 -05:00
M. Scot Breitenfeld
5e3dfa8bbe added test for vol_connector 2019-05-16 15:33:16 -05:00
M. Scot Breitenfeld
1f505e5ab2 removed H5VL constants 2019-05-16 15:20:32 -05:00
M. Scot Breitenfeld
32c4900e89 removed VOLL NULL connector and replaced it with native VOL 2019-05-16 15:05:12 -05:00
Allen Byrne
03da97d792 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '6eaef5ebd61b8019f66f51d3fe74ec3c1b1d4f0f':
  Reorder lines in HDF5config.cmake so that additions to end of $HPC-HDF5options scripts will take precedence.
  updated -E option
  remove -M option
  added -M HPC to ctest command
  fixed missing paralle test
  Adding cross-compilation for theta (ANL) and qsub (COBALT) batch controls.
2019-05-14 14:55:12 -05:00
Allen Byrne
6eaef5ebd6 Merge pull request #1705 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
* commit '9406278103a7b72d3eacea9fbeaadbf34bf7e43a':
  Reorder lines in HDF5config.cmake so that additions to end of $HPC-HDF5options scripts will take precedence.
2019-05-14 14:51:21 -05:00
Larry Knox
9406278103 Reorder lines in HDF5config.cmake so that additions to end of $HPC-HDF5options scripts will take precedence. 2019-05-14 13:52:25 -05:00
Scot Breitenfeld
ef20b65be7 Merge pull request #1703 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:develop to develop
* commit '6546c764d3d39028d2ec61da236cc69b44414127':
  updated -E option
  remove -M option
2019-05-10 16:07:27 -05:00
M. Scot Breitenfeld
6546c764d3 updated -E option 2019-05-10 16:07:12 -05:00
M. Scot Breitenfeld
b4b83f6733 Merge branch 'develop' of ssh://bitbucket.hdfgroup.org:7999/~brtnfld/hdf5_msb into develop 2019-05-10 15:51:27 -05:00
M. Scot Breitenfeld
44fdc3bf96 remove -M option 2019-05-10 15:45:47 -05:00
Scot Breitenfeld
5c5f6d9942 Merge pull request #1701 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:develop to develop
* commit '19d2cea9aec648eb3c609dee4d2dc9baa101c967':
  added -M HPC to ctest command
2019-05-10 14:41:23 -05:00