Commit Graph

498 Commits

Author SHA1 Message Date
Dana Robinson
8c40dab59e Untangle #ifdef mess in ROS3 code. 2019-08-19 18:02:47 -07:00
Dana Robinson
5b6bd7c922 Added the map (H5M) API 2019-08-13 01:36:42 -07:00
Larry Knox
8008294578 Squashed commit of the following:
Merge changes from update_merged_S3_HDFS branch into develop.

commit d5034315aea88629929ac0c9c59ebfafd5f21a31
Merge: 9c48823 d3fdcd8
Author: Larry Knox <lrknox@hdfgroup.org>
Date:   Thu Jul 25 08:24:53 2019 -0500

    Merge branch 'develop' into update_merged_S3_HDFS
2019-07-25 11:47:12 -05:00
Dhvanil Popat
18f65dcee9 Fixed libhdf5 settings file for both autotools & CMake 2019-06-25 07:32:32 +00:00
Larry Knox
3dfc80a28a Moved h5cc.in and h5redeploy.in from tools/misc to bin directory. They
should always be built and installed whether tools are enabled or
disabled.  Also added Makefile.am to bin to build h5redeploy and
to install and uninstall them.  h5cc is created from h5cc.in by
configure.
2019-06-14 10:47:09 -05:00
Larry Knox
5385f032dd Modified Makefile.ams for h5repack, h5watch and gif2h5 to allow
disabling tests.
Moved h5cc.in from tools/src/misc to src directory to always create h5cc
whether or not tools are enabled.
Added configuration status of tools and tests to libhdf5.settings.
2019-06-12 10:21:41 -05:00
Larry Knox
54a07f556c Add options to enable or disable building tools and tests. The default
is enabled for each.
2019-06-05 23:20:01 -05:00
hdftest
1cec61a775 Snapshot version 1.11 release 5.
Update version to 1.11.6.
2019-05-02 10:42:53 -05:00
Songyu Lu
5e7cccb5a2 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~songyulu/hdf5_ray into HDFFV-10658-performance-drop-from-1-8 2019-04-04 13:16:27 -05:00
Songyu Lu
50d9a397ab This commit basically has the following changes:
1. restored the datatype, dataspace, and LCPL of the dataset for VOL connector back to the properties.
2. splitted external.c and vds.c because they called HDsetenv in the program, instead using shell scripts to set the environment variables.
3. changed H5CX_get_vds_prefix and H5CX_get_ext_file_prefix to use H5P_peek instead of H5P_get.
2019-04-04 11:03:05 -05:00
hdftest
7a0ac416c9 Snapshot version 1.11 release 4.
Update version to 1.11.5.
2019-04-01 16:11:28 -05:00
Dana Robinson
f833001e39 Updated sec2, log, and core VFDs to use pread/pwrite when
available (can be controlled via a configure/CMake option)
2019-01-30 17:32:40 -08:00
Ray Lu
44a67451be Merge pull request #1450 in HDFFV/hdf5 from ~SONGYULU/hdf5_ray:TRILAB-98-dt_arith-and-cpp_testhdf5-tests to develop
* commit 'b02de315b93ac29d2483a91d526b110a25073505':
  NNSA Tri-LabsTRILAB-98: Another two test cases out.
  NNSA Tri-Labs TRILAB-98: Taking out a few more test cases.
  NNSA Tri-Labs TRILAB-98 dt_arith and cpp_testhdf5 tests fail on sierra.llnl.gov: According to the group decision, simply provide a macro to disable some failing test cases on sierra (IBM power9 cpu).  All failing cases involve long double data type.
2019-01-08 17:59:03 -06:00
Songyu Lu
2efc28cf63 NNSA Tri-Labs TRILAB-98: Taking out a few more test cases. 2019-01-08 12:45:01 -06:00
Scot Breitenfeld
b4d4d371a0 HDFFV-10443: Add "field" parameter to H5Oinfo* and H5Ovisit* APIs. 2019-01-08 11:24:00 -06:00
Songyu Lu
75c105a2a4 NNSA Tri-Labs TRILAB-98 dt_arith and cpp_testhdf5 tests fail on sierra.llnl.gov: According to the group decision, simply provide a macro to disable some failing test cases on sierra (IBM power9 cpu). All failing cases involve long double data type. 2019-01-07 20:28:37 -06:00
Vailin Choi
d3dff6efe6 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into develop
Resolve conflicts:
Conflicts:
	test/Makefile.am
2019-01-02 13:23:54 -06:00
Dana Robinson
b30a1fe44a Merge pull request #1400 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:openmpi_tweaks to develop
* commit 'd6c2a96ac2f103d90b96d5b39814810e6a31ef99':
  Updated the parallel install docs.
  Eliminated the need for a separate script variable.
  Added a helpful message to the flush script.
  Added a shell script so we can run the parallel flush test on OpenMPI.
2018-12-31 13:33:31 -06:00
Dana Robinson
4faca62679 Eliminated the need for a separate script variable. 2018-12-31 05:04:30 -08:00
Dana Robinson
a3faa92653 Merge branch 'develop' into openmpi_tweaks 2018-12-30 22:24:42 -08:00
Vailin Choi
e035c7abdd Changes based on feedback from pull request. 2018-12-31 00:11:45 -06:00
Vailin Choi
f808c108ed Fix for HDFFV-10659: The library abort with "infinite loop closing library"
after deleting attributes in densed storage.
The fix: When deleting attribute nodes from the name index v2 B-tree,
if an attribute is found in the intermediate B-tree nodes, which may be
merged/redistributed in the process, we need to free the dynamically
allocated spaces for the intermediate decoded attribute.
2018-12-28 16:49:11 -06:00
Dana Robinson
dac76c579b Merge branch 'develop' into yay_plugins 2018-12-28 12:55:15 -08:00
Dana Robinson
621014be28 Added a simple test for registration of VOL connector plugins.
Autotools only for right now, but this will be fleshed out in future
work.
2018-12-27 15:50:04 -08:00
Dana Robinson
18e6ec82d0 Squash merge of MDC logging changes. 2018-12-20 20:41:42 -08:00
Dana Robinson
fe1a5b4279 Added a shell script so we can run the parallel flush test
on OpenMPI.
2018-12-20 03:03:16 -08:00
hdftest
db48399bd8 Snapshot version 1.11 release 3. 2018-11-05 12:21:13 -06:00
Allen Byrne
d8aa676175 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit 'f03758613a6ec83e5ddd664590d162ccc888f13e':
  Snapshot version 1.11 release 2.
  Normalization with vol_integration (test code and H5Xtest.c)
2018-09-21 12:17:19 -05:00
hdftest
e2f6e6f62f Snapshot version 1.11 release 2. 2018-09-20 14:54:10 -05:00
Allen Byrne
2862c93a2b Correct $withval usage in configure 2018-09-20 10:15:33 -05:00
Larry Knox
e6f8a55d8c Correct default API version for develop to 112. 2018-08-29 23:06:50 -05:00
Allen Byrne
ae7da889ec HDFFV-10552 Add missing HDF5_USE_110[2]_API_DEFAULT option 2018-08-17 14:48:43 -05:00
Jordan Henderson
70de0b18e3 Merge pull request #1167 in HDFFV/hdf5 from ~JHENDERSON/hdf5:bugfix/MPI2_only_fixes to develop
* commit '9aa2eaeb9ed9c94f63973cb55f13de256558497c':
  Add Autotools and CMake checks for big I/O MPI-3 functions
  Add hdf5settings section for parallel compression status in CMake builds
  Switch to CheckSymbolExists in CMake
  Add configure check for MPI_Mprobe and MPI_Imrecv functions
2018-08-02 09:25:00 -05:00
Jordan Henderson
9aa2eaeb9e Add Autotools and CMake checks for big I/O MPI-3 functions 2018-07-31 13:42:19 -05:00
M. Scot Breitenfeld
d105690263 Removed FORTRAN_SIZEOF_LONG_DOUBLE from public .h files 2018-07-30 17:01:44 -05:00
Jordan Henderson
e1e10743cf Add configure check for MPI_Mprobe and MPI_Imrecv functions
Add line to libhdf5settings file for status of Parallel writes to
filtered datasets status

Surround Parallel Compression code in MPI_VERSION >= 3 checks

Add disabled message for Parallel Compression built w/ MPI-2

Modify Parallel Compression tests to only run the parallel filtered read
tests when parallel filtered writes are disabled

Update big I/O code to handle being built with MPI-2

Add checks to CMakeLists.txt for MPI_Mprobe and MPI_Imrecv
2018-07-26 12:50:26 -05:00
Larry Knox
3c66549210 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~lrknox/hdf5_lrk into develop 2018-07-18 17:06:59 -05:00
Larry Knox
892252106a Apply Cygwin pathches from Marco Atzeri.
Commit Joe Lee's typo corrections for src/H5MF.c.
2018-07-18 17:01:53 -05:00
Binh-Minh Ribler
ec31438afd Fixed HDFFV-10404
Description:
    Applied the typo fixes from user's report.
    The previous pull request couldn't be merged because it was too old,
    and it was too complicated for me to resolve conflicts.
Platform tested:
    Linux/64 (jelly) - very minor
2018-07-13 13:40:22 -05:00
hdftest
b193bc11c9 Revert "Merge pull request #1116 in HDFFV/hdf5 from ~HDFTEST/hdf5_hft:hdf5_1_10 to develop"
This reverts commit e9f476dad4, reversing
changes made to 2ff00b1b93.
2018-06-24 18:04:23 -05:00
hdftest
25f80cbbec Snapshot version 1.10 release 3 (snap3) 2018-06-24 17:35:05 -05:00
hdftest
67d6f8d405 Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)
* commit '87829e06189cd9b29583b5ca8065b52b1f4cd523': (30 commits)
  HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
  HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
  HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
  Cleaned up H5Fmount/unmount code.
  Normalization with vol_integration branch.
  Add fortran MPI to test and example
  Add mpi include folders for fortran C objects
  Normalization with the vol_integration branch.
  Fixed MANIFEST
  Fix usage of compression lib in shared tests
  Fix jni function call version
  Fix the error found after earlier checkin.
  H5O_info fixes for java and examples
  Added a RELASE.txt entry for HDFFV-10505.
  Changed 'deprecated' to indicate 'no longer supported' in the --enable-debug/production configure flags.
  (1) Made the change according to the pull request feedback. (2) Removed the performance test form test/th5o.c: will decide on what needs to be done to show speedup via HDFFV-10463.
  Normalize with vol_integration.
  Removed unused H5MF functions and updated FUNC_ENTER macros and naming in H5MFsection.c.
  Restored some unused #defines to the deprecated section of H5Dpublic.h.
  Changes made based on feedback from pull request #1039.
  ...
2018-06-16 17:47:39 -05:00
Scot Breitenfeld
87829e0618 Merge pull request #1111 in HDFFV/hdf5 from hdf5_1_10.sync to hdf5_1_10
* commit '57f64b92d19fed2879ee9bafe1d29bfac865d54c': (30 commits)
  HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
  HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
  HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
  Cleaned up H5Fmount/unmount code.
  Normalization with vol_integration branch.
  Add fortran MPI to test and example
  Add mpi include folders for fortran C objects
  Normalization with the vol_integration branch.
  Fixed MANIFEST
  Fix usage of compression lib in shared tests
  Fix jni function call version
  Fix the error found after earlier checkin.
  H5O_info fixes for java and examples
  Added a RELASE.txt entry for HDFFV-10505.
  Changed 'deprecated' to indicate 'no longer supported' in the --enable-debug/production configure flags.
  (1) Made the change according to the pull request feedback. (2) Removed the performance test form test/th5o.c: will decide on what needs to be done to show speedup via HDFFV-10463.
  Normalize with vol_integration.
  Removed unused H5MF functions and updated FUNC_ENTER macros and naming in H5MFsection.c.
  Restored some unused #defines to the deprecated section of H5Dpublic.h.
  Changes made based on feedback from pull request #1039.
  ...
2018-06-15 13:53:36 -05:00
M. Scot Breitenfeld
f484649347 Merge branch 'develop' into hdf5_1_10.sync 2018-06-04 14:41:12 -05:00
hdftest
afe28b7607 Snapshot version 1.10 release 3 (snap2) 2018-06-03 21:53:30 -05:00
Dana Robinson
890203482a Changed 'deprecated' to indicate 'no longer supported' in the
--enable-debug/production configure flags.
2018-05-31 13:17:18 -07:00
hdftest
f8690c40b9 Updated version to 1.10.3-snap2 2018-05-29 15:16:31 -05:00
M. Scot Breitenfeld
b69bd0771e Merge branch 'develop' into hdf5_1_10.sync 2018-05-08 17:17:45 -05:00
hdftest
0c91e6b922 Updated version to 1.10.3-snap1 2018-04-30 08:16:49 -05:00
Quincey Koziol
62b4200f58 Remove vestiges of H5_DEBUG_BUILD macro, switching it to the more
standard H5CX_DEBUG form.
2018-04-06 17:19:29 -05:00