Commit Graph

16413 Commits

Author SHA1 Message Date
Allen Byrne
38b1b534c9 HDFFV-10143 add missing javadoc param 2017-04-06 15:01:30 -05:00
Allen Byrne
388051ba2d Add missing test status 2017-04-06 14:33:09 -05:00
Larry Knox
fdcde1834d Merge pull request #398 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to hdf5_1_10
* commit '75d6ac058e71b3f46333e7f6c7566e4214ccd091':
  Fix CMake regex commands
2017-04-06 12:01:21 -05:00
Allen Byrne
75d6ac058e Fix CMake regex commands 2017-04-06 11:30:56 -05:00
Allen Byrne
5806dd2711 Merge pull request #378 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to hdf5_1_10
* commit 'a4038aed6e895b9d1e686073c135f8aaacc9adab': (21 commits)
  Fix typo deletion
  HDFFV-10143 Update new feature section.
  HDFFV-10143 clean up format and function return
  HDFFV-10143 Add plugin APIs to Java interface
  Update with checks for index bounds
  HDFFV-10143 fix use before set
  HDFFV-10143 surround will fail with try block
  HDFFV-10143 typo cleanup
  HDFFV-10143 typo removed
  Fix code error and use H5PL_MAX_PATH_NUM in test
  HDFFV-10143 Cleanup due to comments
  HDFFV-10143 remove debugging output
  HDFFV-10143 change h5PLget to use buffer like H5Iget_name
  HDFFV-10143 change put to replace and add const
  HDFFV-10143 Use Windows A version of ExpandEnvironmentStrings
  Remove redundant code
  HDFFV-10143 Fix initial issues from review
  HDFFV-10143 add APIs to manipulate plugin path table
  Remove duplicated paths, add new paths
  HDFFV-10143 add APIs to manipulate plugin path table
  ...
2017-04-06 11:28:33 -05:00
Allen Byrne
a4038aed6e Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)
* commit 'd6ea49f5cbcaa852cd0caf34278ec61108667bc3':
  Switch to using flag in signal handler, to trigger dropping out of main loop and shutdown cleanly, instead of calling leave() from the signal handler.
  Fix HDFFV-8089 Description:     Some code within an "ifdef H5D_CHUNK_DEBUG" block was using outdated     data structure but not caught because the case of H5D_CHUNK_DEBUG being     defined was never tested.  It was commented out.     I defined H5D_CHUNK_DEBUG, tested, and commented out again. Platforms tested:     Linux/32 2.6 (jam)     Linux/64 (platypus)     Darwin (osx1010test)
2017-04-04 12:15:32 -05:00
Allen Byrne
db9eeb9f6a Fix typo deletion 2017-04-04 10:16:30 -05:00
Allen Byrne
f17ce1b06e HDFFV-10143 Update new feature section. 2017-04-04 10:09:13 -05:00
Allen Byrne
ed98dc0419 HDFFV-10143 clean up format and function return 2017-04-04 09:54:23 -05:00
Larry Knox
d6ea49f5cb Merge pull request #390 in HDFFV/hdf5 from develop to hdf5_1_10
* commit 'd522632b9e1f1d88db2117e89f3caba0dc4cf38b':
  Switch to using flag in signal handler, to trigger dropping out of main loop and shutdown cleanly, instead of calling leave() from the signal handler.
  Fix HDFFV-8089 Description:     Some code within an "ifdef H5D_CHUNK_DEBUG" block was using outdated     data structure but not caught because the case of H5D_CHUNK_DEBUG being     defined was never tested.  It was commented out.     I defined H5D_CHUNK_DEBUG, tested, and commented out again. Platforms tested:     Linux/32 2.6 (jam)     Linux/64 (platypus)     Darwin (osx1010test)
2017-04-03 18:48:51 -05:00
Quincey Koziol
d522632b9e Merge pull request #389 in HDFFV/hdf5 from fix_h5watch_signal to develop
* commit '1e4b2588b671a2172827bb422aee9ba96c0320b6':
  Switch to using flag in signal handler, to trigger dropping out of main loop and shutdown cleanly, instead of calling leave() from the signal handler.
2017-04-03 14:26:36 -05:00
Allen Byrne
f9199536d0 HDFFV-10143 Add plugin APIs to Java interface 2017-04-03 14:12:54 -05:00
Quincey Koziol
1e4b2588b6 Switch to using flag in signal handler, to trigger dropping out of main loop
and shutdown cleanly, instead of calling leave() from the signal handler.
2017-04-03 11:56:52 -07:00
Allen Byrne
399060c17a Update with checks for index bounds 2017-04-03 12:35:38 -05:00
Allen Byrne
dd2749d1be Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)
* commit '6387f7099d22c66dab415c57f9fd547eb86e4ad5':
  Small corrections to DOPYING file.
  Add new file COPYING_LBNL_HDF5.
  Revert "Clear hdf5 1.10 entries from RELEASE.txt in the develop branch.  Entries"
  Add LBNL license file and modify COPYING file accordingly.
  Omnibus checkin for several relatively minor modifications:
2017-04-03 09:23:33 -05:00
Binh-Minh Ribler
2412158ed8 Merge pull request #374 in HDFFV/hdf5 from ~BMRIBLER/hdf5_bmr_cpp3:develop to develop
Fix HDFFV-8089

* commit '52f8c2ed494ea1b89374981ecc6901abe8fd5fed':
  Fix HDFFV-8089 Description:     Some code within an "ifdef H5D_CHUNK_DEBUG" block was using outdated     data structure but not caught because the case of H5D_CHUNK_DEBUG being     defined was never tested.  It was commented out.     I defined H5D_CHUNK_DEBUG, tested, and commented out again. Platforms tested:     Linux/32 2.6 (jam)     Linux/64 (platypus)     Darwin (osx1010test)
2017-04-03 08:37:30 -05:00
Larry Knox
6387f7099d Merge pull request #385 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to hdf5_1_10
* commit '194f604ad04ec976a1d761090aa892f9f28514c3':
  Small corrections to DOPYING file.
  Add new file COPYING_LBNL_HDF5.
  Revert "Clear hdf5 1.10 entries from RELEASE.txt in the develop branch.  Entries"
  Add LBNL license file and modify COPYING file accordingly.
  Omnibus checkin for several relatively minor modifications:
2017-03-31 14:07:38 -05:00
lrknox
194f604ad0 Small corrections to DOPYING file. 2017-03-31 12:17:50 -05:00
lrknox
f4b64cd845 Merge branch 'develop' into hdf5_1_10 2017-03-31 11:59:20 -05:00
Allen Byrne
c99679337a HDFFV-10143 fix use before set 2017-03-30 17:41:35 -05:00
Allen Byrne
f1e64c512a HDFFV-10143 surround will fail with try block 2017-03-30 17:13:28 -05:00
Allen Byrne
037e7a4a72 HDFFV-10143 typo cleanup 2017-03-30 17:13:21 -05:00
Allen Byrne
fb6acd82a0 HDFFV-10143 typo removed 2017-03-30 17:13:12 -05:00
Allen Byrne
0f9e09a65d Fix code error and use H5PL_MAX_PATH_NUM in test 2017-03-30 17:12:53 -05:00
Larry Knox
349222225a Merge pull request #382 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
* commit '9afc2d1fc05c0ee87cb27ff1f6179e00b5eb6ac2':
  Add new file COPYING_LBNL_HDF5.
2017-03-30 17:01:52 -05:00
Allen Byrne
33ad855c6b HDFFV-10143 Cleanup due to comments 2017-03-30 15:03:56 -05:00
Allen Byrne
e245544ef2 HDFFV-10143 remove debugging output 2017-03-30 14:48:11 -05:00
Allen Byrne
09e76f7782 HDFFV-10143 change h5PLget to use buffer like H5Iget_name 2017-03-30 14:40:52 -05:00
Allen Byrne
cb222dded2 HDFFV-10143 change put to replace and add const 2017-03-30 14:40:44 -05:00
Allen Byrne
c25651fc5c HDFFV-10143 Use Windows A version of ExpandEnvironmentStrings 2017-03-30 13:04:19 -05:00
Allen Byrne
db3638b791 Remove redundant code 2017-03-30 12:37:05 -05:00
Allen Byrne
10ef22fcd6 HDFFV-10143 Fix initial issues from review 2017-03-30 12:20:59 -05:00
lrknox
9afc2d1fc0 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~lrknox/hdf5_lrk into develop 2017-03-30 10:34:48 -05:00
lrknox
8eef625ef4 Add new file COPYING_LBNL_HDF5. 2017-03-30 10:33:51 -05:00
John Mainzer
313fedfca1 Merge pull request #376 in HDFFV/hdf5 from ~MAINZER/hdf5_jrm:develop to develop
* commit 'afd8f64c29f7cffde895232406a3a388c6d77e77':
  Omnibus checkin for several relatively minor modifications:
2017-03-30 10:25:07 -05:00
Larry Knox
ab0b5149f6 Merge pull request #375 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
* commit 'c1f95b28caae290a7c0136537daca9004db055b8':
  Revert "Clear hdf5 1.10 entries from RELEASE.txt in the develop branch.  Entries"
  Add LBNL license file and modify COPYING file accordingly.
  Clear hdf5 1.10 entries from RELEASE.txt in the develop branch.  Entries in this branch version of RELEASE.txt should be intended for the future 1.12.0 release.
2017-03-29 23:06:05 -05:00
lrknox
c1f95b28ca Revert "Clear hdf5 1.10 entries from RELEASE.txt in the develop branch. Entries"
This reverts commit 1a114c191d.
2017-03-29 13:55:41 -05:00
lrknox
ef297238bd Add LBNL license file and modify COPYING file accordingly. 2017-03-29 13:36:52 -05:00
Allen Byrne
ebc0a62517 Merge branch 'develop' into hdf5_1_10 2017-03-29 09:14:42 -05:00
Allen Byrne
ac40086b72 Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)
* commit '3dbfc568d7717d0252a4c91c9883d02a5574b3c1':
  Resolve conflict missed in merge.
  Clear hdf5 1.10 entries from RELEASE.txt in the develop branch.  Entries in this branch version of RELEASE.txt should be intended for the future 1.12.0 release.
  Update with extra checks for reference
  Update cdash max test output and VS version matching
  Stop skipping h5watch tests.
  Add H5_DLL to H5AC_get_mdc_image_info() prototype
  Update RELEASE.txt based on review comments from pull request.
  Description:     Removed notes about the C++ API in develop.  Only keep in 1.10 branch.
  Add prototype for H5AC_get_mdc_image_info
  Minor style cleanups
  Revert "Switch h5clear for cache images to use existing H5Pget_cache_image_config()"
  Update RELEASE.txt to reflect changes for new features and bug fixes since 1.10.0-patch1.
  Run all scripts using signal files between processes in their own directories to avoid accidental deletion of the signal files.
  Remove extra space added by h5vers to version string in H5.java, which then failed to match the pattern after the first run.
  Remove incorrect " marks added to java files by bin/h5vers. Pull version from configure for version test in h5repack_plugin.sh.in
  Description:     Fixed typos and missing items in function headers, that were revealed     by Doxygen, and revised various comments. Platforms tested:     Linux/32 2.6 (jam)     Linux/64 (platypus)     Darwin (osx1010test)
  Description:     Updated the C++ API sections.
  Extend h5vers to update version strings in java files and h5repack version test expected output file.
  Run swmr tests in their own subdirectory of test to avoid signal file deletion by other tests.
2017-03-29 09:08:06 -05:00
Larry Knox
3dbfc568d7 Merge pull request #377 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to hdf5_1_10
* commit 'a1dc1a5f28b99d30b7870f764c288995cabc7ad0':
  Resolve conflict missed in merge.
  Clear hdf5 1.10 entries from RELEASE.txt in the develop branch.  Entries in this branch version of RELEASE.txt should be intended for the future 1.12.0 release.
  Update with extra checks for reference
  Update cdash max test output and VS version matching
  Stop skipping h5watch tests.
  Add H5_DLL to H5AC_get_mdc_image_info() prototype
  Update RELEASE.txt based on review comments from pull request.
  Description:     Removed notes about the C++ API in develop.  Only keep in 1.10 branch.
  Add prototype for H5AC_get_mdc_image_info
  Minor style cleanups
  Revert "Switch h5clear for cache images to use existing H5Pget_cache_image_config()"
  Update RELEASE.txt to reflect changes for new features and bug fixes since 1.10.0-patch1.
  Run all scripts using signal files between processes in their own directories to avoid accidental deletion of the signal files.
  Remove extra space added by h5vers to version string in H5.java, which then failed to match the pattern after the first run.
  Remove incorrect " marks added to java files by bin/h5vers. Pull version from configure for version test in h5repack_plugin.sh.in
  Description:     Fixed typos and missing items in function headers, that were revealed     by Doxygen, and revised various comments. Platforms tested:     Linux/32 2.6 (jam)     Linux/64 (platypus)     Darwin (osx1010test)
  Description:     Updated the C++ API sections.
  Extend h5vers to update version strings in java files and h5repack version test expected output file.
  Run swmr tests in their own subdirectory of test to avoid signal file deletion by other tests.
2017-03-28 16:55:26 -05:00
lrknox
a1dc1a5f28 Resolve conflict missed in merge. 2017-03-28 16:36:30 -05:00
lrknox
c7f3365015 Merge branch 'develop' into hdf5_1_10 2017-03-28 16:29:11 -05:00
Allen Byrne
77e1f1e491 HDFFV-10143 add APIs to manipulate plugin path table 2017-03-28 14:15:13 -05:00
Allen Byrne
7fd79abc0c Remove duplicated paths, add new paths 2017-03-28 13:42:00 -05:00
Allen Byrne
98e4bfec5a Merge pull request #5 in ~BYRN/hdf5_adb from bugfix/HDFFV-10143-programmatic-setting-plugin-path to develop
* commit 'bb80ae98543f80779ef726a20460b9b180b5cd2b':
  HDFFV-10143 add APIs to manipulate plugin path table
2017-03-28 13:36:52 -05:00
Allen Byrne
bb80ae9854 HDFFV-10143 add APIs to manipulate plugin path table 2017-03-28 13:35:49 -05:00
mainzer
afd8f64c29 Omnibus checkin for several relatively minor modifications:
1) Added code test/page_buffer.c to verify that page buffering is
   disabled in parallel builds.

2) Added code to test/cache_image.c to verify correct interaction
   between evict on close and cache image -- in particular management
   of a file containing a cache image containing dirty metadata that
   has been opened R/O.  Also fix for the bug exposed.

3) Added code to testpar/t_cache_image.c to verify expected procedure
   for reading cache images, and also supporting stats collection code
   needed for the test.

4) Repair of an overactive sanity check in H5C__reconstruct_cache_contents().

5) Other minor tidies in passing.

Tested serial and parallel, debug and production on Jelly.
2017-03-28 11:21:40 -05:00
lrknox
1a114c191d Clear hdf5 1.10 entries from RELEASE.txt in the develop branch. Entries
in this branch version of RELEASE.txt should be intended for the future
1.12.0 release.
2017-03-28 10:06:18 -05:00
Allen Byrne
09f8d2f37e Merge pull request #4 in ~BYRN/hdf5_adb from develop to bugfix/HDFFV-10143-programmatic-setting-plugin-path
* commit 'be028580c8789301e4106d8d6e79a8fc8300e706':
  Update with extra checks for reference
  Update cdash max test output and VS version matching
  Stop skipping h5watch tests.
  Add H5_DLL to H5AC_get_mdc_image_info() prototype
  Update RELEASE.txt based on review comments from pull request.
  Description:     Removed notes about the C++ API in develop.  Only keep in 1.10 branch.
  Add prototype for H5AC_get_mdc_image_info
  Minor style cleanups
  Revert "Switch h5clear for cache images to use existing H5Pget_cache_image_config()"
  Update RELEASE.txt to reflect changes for new features and bug fixes since 1.10.0-patch1.
  Run all scripts using signal files between processes in their own directories to avoid accidental deletion of the signal files.
  Remove extra space added by h5vers to version string in H5.java, which then failed to match the pattern after the first run.
  Remove incorrect " marks added to java files by bin/h5vers. Pull version from configure for version test in h5repack_plugin.sh.in
  Description:     Fixed typos and missing items in function headers, that were revealed     by Doxygen, and revised various comments. Platforms tested:     Linux/32 2.6 (jam)     Linux/64 (platypus)     Darwin (osx1010test)
  Description:     Updated the C++ API sections.
  Extend h5vers to update version strings in java files and h5repack version test expected output file.
  Add reference to CMake application framwork
  Whitespace changes
  Update notes
  Run swmr tests in their own subdirectory of test to avoid signal file deletion by other tests.
2017-03-28 09:36:31 -05:00