Commit Graph

10457 Commits

Author SHA1 Message Date
Quincey Koziol
7fc10c0ea7 [svn-r14413] Description:
Change H5P[gs]et_format_bounds() => H5P[gs]et_libver_bounds() and also
enumerated values H5F_FORMAT_{EARLIEST, LATEST} => H5F_LIBVER_{EARLIEST, LATEST}

Tested on:
        FreeBSD/32 6.2 (duty) in debug mode
        FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Mac OS X/32 10.4.10 (amazon) in debug mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2008-01-14 18:49:12 -05:00
Pedro Vicente Nunes
a6605796b3 [svn-r14412] more progress on the block hyperslab bug, clean code
modified the 3D test case for subsetting with block and stride factors

tested: windows, linux
2008-01-14 16:57:19 -05:00
Pedro Vicente Nunes
1c3e5859d1 [svn-r14411] more progress on the block hyperslab bug, clean code
modified the 2D test case for subsetting with block and stride factors


tested: windows, linux
2008-01-14 16:29:09 -05:00
Pedro Vicente Nunes
4c2256e946 [svn-r14410] code cleaning 2008-01-14 16:12:51 -05:00
Pedro Vicente Nunes
b8b215b34a [svn-r14409] more progress on the block hyperslab bug, clean code
modified the 1D test case for subsetting with block and stride factors

tested: windows, linux
2008-01-14 16:08:55 -05:00
Pedro Vicente Nunes
e8bd4e7e4c [svn-r14408]
more progress on the block hyperslab bug, clean code 


tested: windows, linux
2008-01-14 15:16:40 -05:00
Pedro Vicente Nunes
cdc33803ee [svn-r14407] more progress on the block hyperslab bug, clean code
tested: windows, linux
2008-01-14 13:47:50 -05:00
Pedro Vicente Nunes
fd031dd713 [svn-r14406] bug fix: a type ID was not closed
not tested, since /examples has several compiling errors due to new APIs
this check in should have no problems
2008-01-14 12:55:45 -05:00
Quincey Koziol
d6e767c21d [svn-r14402] Description:
Add work-around to allow reading files that were produced with a buggy
earlier version of the library, which could create objects with the wrong
object header message count.  There is now a configure flag
"--enable-strict-format-checks" which triggers a failure on reading a file
with this sort of corruption (when enabled) and allows the object to be read
(when disabled).  The default value for the "strict-format-checks" flag is
yes when the "debug" flag is enabled and no when the "debug" flag is disabled.

	Note that if strict format checks are disabled (allowing objects with
this particular kind of corruption to be read) and the file is opened with
write access, the library will re-write the object header for the corrupt
object with the correct # of object header messages.

	This closes bugzilla bug #1010.

Tested on:
        FreeBSD/32 6.2 (duty) in debug mode
        FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Mac OS X/32 10.4.10 (amazon) in debug mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2008-01-13 00:37:00 -05:00
Elena Pourmal
d9bc27b535 [svn-r14399] Maintenance: fixed some typos. 2008-01-11 08:35:44 -05:00
Elena Pourmal
630087626e [svn-r14398] Bug fix: Fixed installation instructions for the OpenVMS system 2008-01-10 23:13:01 -05:00
Pedro Vicente Nunes
d89234baaa [svn-r14397] partial fix for the block selection subsetting bug (2D case ok)
tested: windows, linux
2008-01-10 16:31:28 -05:00
Elena Pourmal
3882c2f9b4 [svn-r14396] Maintenance: VMS doesn't like multiple "." in the file names; we will need to rename tar ball for the
VMS user; used generic name <source> to specify the tar ball and top directory names for now.
2008-01-10 15:56:39 -05:00
Elena Pourmal
7b50bea4c3 [svn-r14395] Maintenance: Updated installation instructions for VMS system. 2008-01-10 15:35:43 -05:00
Elena Pourmal
3c27797b21 [svn-r14394] Maintenance on VMS: cleaned up the scripts to avoid the annoying warning messages
and to delete temporary files

Platforms tested: VMS server
2008-01-10 12:59:00 -05:00
Raymond Lu
905ff444f4 [svn-r14393] Changed the way that the file name string is represented.
Tested on smirom.
2008-01-10 11:48:52 -05:00
Elena Pourmal
e982a364fe [svn-r14390] Maintenance for VMS system before the final release:
Updated utilities test scripts to make output more legible; fixed some typos.
	Added four new expected output files to avoid false negative reports
	for the h5dump tests (for ones that expect to have error report in them).
        Updated MANIFEST to reflect the changes.
Platforms tested: 
	VMS server (more testing is on the way)
2008-01-09 17:27:55 -05:00
Raymond Lu
0545c915c3 [svn-r14389] Changed some test cases to use H5Sselect_elements instead of H5Sselect_hyperslab for test
purpose.

Tested on smirom only.  Simple changes.
2008-01-09 17:18:47 -05:00
Raymond Lu
b58ac6c8ee [svn-r14385] This checkin completely modified the test for the coordinate calculation of dataspace selection.
It covers many cases.

Tested on smirom, kagiso, and linew.
2008-01-09 09:16:57 -05:00
Pedro Vicente Nunes
7e80ad2af2 [svn-r14384] new file with output regarding the new binary file 2008-01-08 16:09:19 -05:00
Pedro Vicente Nunes
91b0b68167 [svn-r14383] new binary file: with double dataset with NaN values 2008-01-08 16:01:51 -05:00
Pedro Vicente Nunes
28b47d461f [svn-r14382] bug fix: enable NaN detection for double type
note: RFC at http://www.hdfgroup.uiuc.edu/RFC/HDF5/NaNs_and_HDF5/

tested: windows, linux, solaris
2008-01-08 15:14:59 -05:00
Pedro Vicente Nunes
95a801714b [svn-r14381] comment typo fix 2008-01-07 15:45:09 -05:00
Pedro Vicente Nunes
8ba92cda45 [svn-r14380] Eliminate old code not used and that was replaced (command line)
tested: windows, linux
2008-01-07 15:36:32 -05:00
Pedro Vicente Nunes
20c5484440 [svn-r14379] add check of some values for the nbit and scale offest filters on the h5repack verify function
note: some sybols were made public

tested: windows, linux
2008-01-07 14:16:29 -05:00
Elena Pourmal
dfbeb73b48 [svn-r14378] Maintenance: Cleaned up the test script and add reporting of false negative tests.
Platforms tested: VMS server
2008-01-06 19:15:44 -05:00
Elena Pourmal
5808f6c3c8 [svn-r14377] Maintenance: Added Ray's new test tcoords.c to the build script;
modified h5import test script to cleanup the files after the test; 
             modified "master" building script to run tools tests.
Platforms tested: VMS server (not quite done yet)
2008-01-05 21:42:01 -05:00
Pedro Vicente Nunes
6d53c1882b [svn-r14376] moved a couple more private filter symbols to the public side, needed by h5repack
tested: windows, linux
2008-01-04 14:52:19 -05:00
Frank Baker
f185554814 [svn-r14375] Update copyright to 2008. 2008-01-04 14:03:16 -05:00
Quincey Koziol
c0b966ba1b [svn-r14374] Description:
Updates from running bin/reconfigure on recent changes, in preparation for
making private snapshot.  Also updated tracing information for recent types
added to public API routines.

Tested on:
    Linux/32 2.6.x (kagiso)
2008-01-04 12:43:56 -05:00
Elena Pourmal
da95bdb88f [svn-r14373] Maintenance: Fixed the script to use the correct VMS file name when file doesn't have
an extension.

Platforms tested: VMS server
2008-01-03 20:38:17 -05:00
Quincey Koziol
1831bc1d13 [svn-r14372] Description:
Further cleanups & simplifications to prepare for next phase of work.

Tested on:
	FreeBSD/32 6.2 (duty)
	Mac OS X/32 10.5.1 (amazon)
2008-01-03 18:05:04 -05:00
Quincey Koziol
6237d44a08 [svn-r14371] Description:
Code cleanups in preparation for larger changes.

Tested on:
	Mac OS X/32 (amazon)
2008-01-03 16:57:47 -05:00
Elena Pourmal
f6218c4843 [svn-r14370] Maintenance: more cleanup of the h5import script 2008-01-03 16:18:14 -05:00
Elena Pourmal
bedd5c4395 [svn-r14369] Maintenance: Cleaned up the h5import script and fixed some potential errors.
Platforms tested: not yet, waiting for the server to come back
2008-01-03 16:04:12 -05:00
Pedro Vicente Nunes
6f820c0a24 [svn-r14368] clean code and reshufle functions between modules, remove unused functions
tested: windows, linux
2008-01-03 15:45:18 -05:00
Elena Pourmal
0402a2a030 [svn-r14367] Maintenance for VMS system: updated testscript for h5import (need more work) and
added new source file to the librray compilation script.
Platforms tested: not yet since VMS server went down; this change doesn't affect any other platform
2008-01-03 15:09:00 -05:00
Pedro Vicente Nunes
ba709fe871 [svn-r14366] comments grammar correction 2008-01-03 15:03:38 -05:00
Pedro Vicente Nunes
5aab9089de [svn-r14365] Add szip filter check of client data values for has_filters.
NOTE: szip client symbols were made public

Tested: windows, linux, solaris
2008-01-03 14:59:25 -05:00
Quincey Koziol
136cefdf91 [svn-r14364] Description:
Avoid creating free space manager for fractal heap when just performing
queries.

Tested on:
        FreeBSD/32 6.2 (duty) in debug mode
        FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Mac OS X/32 10.4.10 (amazon) in debug mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2008-01-03 14:01:17 -05:00
Quincey Koziol
04d73e7a0c [svn-r14363] Description:
Refactor file space allocation routines into separate source module.

Tested on:
        FreeBSD/32 6.2 (duty) in debug mode
        Mac OS X/32 10.4.10 (amazon) in debug mode
2008-01-03 13:24:01 -05:00
Quincey Koziol
35694d44ae [svn-r14362] Description:
Switched from "H5P[gs]et_latest_format" to "H5P[gs]et_format_bounds".

Tested on:
        FreeBSD/32 6.2 (duty) in debug mode
        FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Mac OS X/32 10.4.10 (amazon) in debug mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2008-01-03 08:55:39 -05:00
Pedro Vicente Nunes
23c1eb4a6c [svn-r14361] add a warning message in case a dataset cannot be created with modified DCPL
tested: linux
2008-01-02 15:45:33 -05:00
Pedro Vicente Nunes
7e1d390491 [svn-r14360] New function has_filters (replace has_filters for each object and for global filters): verify if all requested filters in the array FILTER obtained from user input are present in the property list PID obtained from the output file. All the filter comparison of client data values is done here instead of the previous filtcmp
TO DO: szip, nbit and scale offset
NOTE: the symbol H5Z_SHUFFLE_TOTAL_NPARMS was made public

Tested: windows, teragrid with icc 8.1, linux (kagiso), solaris (linew)
2008-01-02 14:40:20 -05:00
Quincey Koziol
8a2c76ed69 [svn-r14359] Description:
Corrected a compiler warning in the local heap code.

	Fixed the shared message flag symbols from the recent switchover.

Tested on:
	FreeBSD 6.2/32 (duty)
2007-12-23 22:38:00 -05:00
Quincey Koziol
02a90afcdc [svn-r14358] Description:
Tweak the constants for the shared message flags to be equal to the
other flags useds for the underlying messages.

Tested on:
        FreeBSD/32 6.2 (duty) in debug mode
        FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Mac OS X/32 10.4.10 (amazon) in debug mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2007-12-22 22:28:37 -05:00
Quincey Koziol
a0e70a08ba [svn-r14357] Description:
Add a hack to the local heap code to resize the metadata cache when
the heap block will be too large for the cache.  This should be removed when
the metadata cache handles "too large" object insertions (or resizes) correctly.

Tested on:
        FreeBSD/32 6.2 (duty) in debug mode
        FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Mac OS X/32 10.4.10 (amazon) in debug mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2007-12-22 14:32:11 -05:00
Quincey Koziol
bffc42f6ac [svn-r14356] Description:
Refactor work for bug #956 to simplify a bit and to cover some corner
cases.

Tested on:
        FreeBSD/32 6.2 (duty) in debug mode
        FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Mac OS X/32 10.4.10 (amazon) in debug mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2007-12-20 17:37:21 -05:00
Pedro Vicente Nunes
491971980d [svn-r14355] uncomment previously commented code regarding nbit and scale-offset filter adding
changed the logic of the filter compare function to first compare filter type, then filter client data values (separate here in each individual case, since some filters return private filter values. Todo: handle the nbit and scale-offest cases)

tested: windows, linux
2007-12-20 16:31:34 -05:00
Raymond Lu
8377804436 [svn-r14354] Bug fix for #956 where the element coordinates went wrong for dataspace selection. Added a test
for it, too.  This round of checkin isn't well tarnished yet.  I'll come back to work on Jan. 8. I'll revise it then. 

Tested it on kagiso, smirom, linew.
2007-12-20 16:09:58 -05:00