* fixed missed closing of a dataset
* fixed missed closing of a dataset
* fixed typo in error return
* Committing clang-format changes
* minor edits
* code format
* Committing clang-format changes
* code format
* minor edit
* added H5fortkit dependency for H5VLff.F90, HDFFV-11232
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* OESS-98 convert plugin option to FetchContent, add tests
* Fixes for pkcfg files because of plugin option
* OESS-98 fix tools test for plugins
* Keep doxygen comments under 100 chars long - format hint
* Whitespace
* HDFFV-11144 - Reclassify CMake messages
* HDFFV-11099/11100 added help text
* Reworked switch statement to compare string instead
* Fix typo
* Update CDash mode
* Correct name of threadsafe
* Correct option name
* Undo accidental commit
* Note LLVM 10 to 11 format default changes
* Update format plugin
* Undo clang-format version 11 changes
* One more correction
* Update supported platforms
* Revert whitespace changes
* Correct whitespace
* Changes from PR#3
* HDFFV-11213 added option to control gcc10 warnings diagnostics
* HDFFV-11212 Use the new references correctly in JNI utility and tests
* format source
* Fix typo
* Add new test file
* HDFFV-11212 - update test and remove unused arg
* Minor non-space formatting changes
* Use H5I_INVALID_ID instead of "-1"
* source formatting
* add missing testfile, update jni function
* Undo commit of debug code
* remove mislocated file
* Fix h5repack test for handling of fapls and id close
* Update h5diff test files usage text
* HDFFV-11212 add new ref tests for JNI export dataset
* src format update
* Remove blank line typo
* src format typo
* long double requires %Lg
* Another long double foramt specifer S.B. %Lg
* issue with t128bit test
* Windows issue with h5dump and type.
* Fix review issues
* refactor function nesting and fix error checks
* format fixes
* Remove untested functions and javadoc quiet comments
* Restore TRY block.
* Change string append errors to memory exception
* revert to H5_JNI_FATAL_ERROR - support functions need work
* Add assertion error for h5util functions
* remove duplicate function
* format fix
* Revert HD function error handling
* Update copyright comments
* GH #386 java folder copyright corrections
* Whitespace
* GH #359 implement and fix tools 1.6 API usage
* remove excessive comments
* Flip inits to correct ifdef section
* rework ifdef to be simpler
* format issue
* Reformat ifdef inits
* remove static attribute
* format compliance
* Update names
* Revert because logic relies on float not being int
* Changes noticed from creating merge of #412
* Double underscore change
* Correct compiler version variable used
* Remove header guard underscores
* Whitespace cleanup
* Fixed many -Wreserved-id-macro warnings by fixing header guard spelling
Removed leading underscore(s) from header guard spelling. Used 2 regexes:
` _H5(.*)_H`
` __H5(.*)_H`
Applied case-insensitively to only .h files.
* Modified scripts that generate header files to not use underscore prefix
Interestingly, there was already no leading underscore in the trailing comment at the end of the file
* Fixed remaining -Wreserved-id-macro warning not caught by regex
* Modify temporary rpath for testing in java example scripts.
* Update URL in source file Copyright headers for web copy of COPYING
file - files not in src or test.
* OESS-98 convert plugin option to FetchContent, add tests
* Fixes for pkcfg files because of plugin option
* OESS-98 fix tools test for plugins
* Keep doxygen comments under 100 chars long - format hint
* Whitespace
* HDFFV-11144 - Reclassify CMake messages
* HDFFV-11099/11100 added help text
* Reworked switch statement to compare string instead
* Fix typo
* Update CDash mode
* Correct name of threadsafe
* Correct option name
* Undo accidental commit
* Note LLVM 10 to 11 format default changes
* Update format plugin
* Undo clang-format version 11 changes
* One more correction
* OESS-98 convert plugin option to FetchContent, add tests
* Fixes for pkcfg files because of plugin option
* OESS-98 fix tools test for plugins
* Keep doxygen comments under 100 chars long - format hint
* Whitespace
* HDFFV-11144 - Reclassify CMake messages
* OESS-98 convert plugin option to FetchContent, add tests
* Fixes for pkcfg files because of plugin option
* OESS-98 fix tools test for plugins
* Pkgconfig fix - #218
* Update all pkgconfig settings with version
* OESS-98 convert plugin option to FetchContent, add tests
* Fixes for pkcfg files because of plugin option
* Update other test machines
* OESS-98 fix tools test for plugins
* HDFFV-10865 performance improvement for java array
The VOL_LIST variable used in the Autotools was duplicated in many
subdirectories. It's been moved to config/conclude.am to avoid
duplication. VFD_LIST was also moved to conclude.am.
* Basic alignment with async branch - trivial changes to reduce clutter in overall diff.
* Update minor error code to reflect change within library
* Update the error output to match library
* commit 'f19e06b59ee53f17465a7b5974c25c3245a40d9a':
testpar/t_2Gio.c: Fix a typo that I think was introduced by a previous warnings PR. An array element was assigned to itself---shape[2]Â =Â shape[2];---instead of being assigned to chunk[2].
previous warnings PR. An array element was assigned to
itself---shape[2]Â =Â shape[2];---instead of being assigned to
chunk[2].
fortran/src/H5Pf.c: move conditional compilation controlled by
H5_NO_DEPRECATED_SYMBOLS outside of a function for readability.
fortran/src/H5match_types.c: put a variable's declaration under the same
conditional compilation (H5_FORTRAN_HAVE_C_LONG_DOUBLE) as its
use.
For now, skip compilation of some unused debug dump routines in the JNI.
While I'm in the JNI, delete a set-but-unused variable.
src/H5Z.c: condition a variable declaration on H5_NO_DEPRECATED_SYMBOLS
so that it's not declared but unused or vice versa.
test/cache_common.h: add an #include in to get some symbols we need to
avoid implicit declaration warnings.
test/dsets.c: use a more conventional conditional-compilation syntax.
test/dt_arith.c, test/fillval.c: initialize a bunch of uninitialized
variables before use.
test/vfd.c: pass the expected type of `void **` to posix_memalign(3)
instead of `int **`.
testpar/t_bigio.c: explicitly compare with 0 instead of using ! when
"equal to 0?" is the question not "is false?" Repair some
indentation while I'm here.
testpar/testpar.h: repair misaligned line-continuation backslashes in a
macro that probably should be a function so that we don't have
to fiddle with the line continuation to begin with.
tools/src/h5repack/h5repack_main.c: fix some compiler fussing about
enums.
tools/test/perform/pio_engine.c: the compiler fusses if you cast a
function call returning double directly to off_t. It's ok if
you cast a variable that's a double to off_t, however. Write
and use a new function, sqrto(), to avoid the cast warnings.
"obsolete" / POSIX "basic" regular expressions. Also, not every version of
`sed` out there supports the `-E` option. So delete the -E flag and use
the regex `[^/][^/]*` instead of `[^/]+`.
Add config/netbsd to the MANIFEST.
* commit '0b721858e46a317c370a24115032d5be41688f67':
Make these scripts relocatable again: derive a relative path for the original installation prefix from the examples prefix. Use that relative path to locate the current installation prefix, always. Fall back to an absolute installation prefix if the relative path cannot be derived.
Get the path to prefix right: needs a ../ to back out of subdirectory c/.
Make this script relocatable again: derive a relative path for the original installation prefix from the examples prefix. Use that relative path to locate the current installation prefix, always. Fall back to an absolute installation prefix if the relative path cannot be derived.
Let us override the examples directory using --with-examplesdir=DIR. This is handy for NetBSD where HDF5 examples are installed by convention in $prefix/share/examples/hdf5/ rather than in ${prefix}/share/hdf5_examples/, which is the HDF5 default.
Follow longstanding execv convention for compatibility with NetBSD.
Under the examples directories, always find the installed HDF5 executables and scripts using @prefix@ instead of a relative path, because the number of ../ in the relative path will be different on NetBSD than on other systems.
Make the HDF5 configure script grok NetBSD.
For portability, insulate the HDF5 library from some system macros.
Not every system has perl installed in /usr/bin/, so change the shebang (#!) line to `/usr/bin/env perl` to locate perl on the PATH.
For portability, use the POSIX sh(1) string-comparison operator `=` instead of `==`.
original installation prefix from the examples prefix. Use that
relative path to locate the current installation prefix, always. Fall
back to an absolute installation prefix if the relative path cannot be
derived.
This is handy for NetBSD where HDF5 examples are installed
by convention in $prefix/share/examples/hdf5/ rather than in
${prefix}/share/hdf5_examples/, which is the HDF5 default.
Place hdf5_examples/ under ${datarootdir} which on most systems will be
${prefix}/share/, anyway.
executables and scripts using @prefix@ instead of a relative
path, because the number of ../ in the relative path will be
different on NetBSD than on other systems.
Examples on NetBSD are installed at ${prefix}/share/examples/hdf5/
instead of at ${prefix}/share/hdf5_examples/, by convention. It may be
the same on other BSDs, I'm not sure.
* commit '4227b8948d7091205b4f8dc1271d7dcae01bb0fb':
Reverts the removal of config/conclude_fc.am while keeping the changes to config/gnu-fflags.
Fixed a couple of typos.
* commit 'd169391529f253a9903b8e6cacf38c59ceefab07':
Parallel Fortran tests now use the MPI module instead of including mpif.h.
First stab at gfortran versions. Tested on gfortran 7-9 so far.
Moved the -std=f2008 option to gfortran 9 for now.
Updated gfortran options. * Removed conclude_fc.am, which was causing verbose builds. Need to investigate more, though. * Added gfortran 9 warnings and flags. This will need to be separated into other version blocks based on when the options first appeared. * The standard is now explicitly set at 2008.
* commit '7d291d059da6287f769951c4854c566da0b93ce8':
Parallel Fortran tests now use the MPI module instead of including mpif.h.
First stab at gfortran versions. Tested on gfortran 7-9 so far.
Moved the -std=f2008 option to gfortran 9 for now.
Updated gfortran options. * Removed conclude_fc.am, which was causing verbose builds. Need to investigate more, though. * Added gfortran 9 warnings and flags. This will need to be separated into other version blocks based on when the options first appeared. * The standard is now explicitly set at 2008.
* Removed conclude_fc.am, which was causing verbose builds. Need to
investigate more, though.
* Added gfortran 9 warnings and flags. This will need to be separated
into other version blocks based on when the options first appeared.
* The standard is now explicitly set at 2008.
* commit '712a2a13d8add828d053135a172abb2e819d59ad':
Fixed a warning in H5CX.c concerning incorrect use of freeing VOL connector info.
Add H5S_SEL_ITER_SHARE_WITH_DATASPACE selection iterator creation flag, to share dataspace's selection with iterator (and with caution about not modifying or closing the dataspace while the iterator is open).
Fix misc. typos, etc. from code review
New hyperslab selection routines and new public selection iterator routines.
* commit '0742c15fca95965ed4eb87c6d54f41bb07bd4526':
makefile clean-up
move the vol_info to an optional parameter
added H5Pset_vol
added vol connector
added test for vol_connector
removed H5VL constants
removed VOLL NULL connector and replaced it with native VOL
added connector_name test
added missing files
add tests
added more tests
added missing files
Implemented VOL APIs and C constants, no tests
Implemented VOL APIs and C constants, no tests
initial API impl.
This implicitly adds support for changing the VOL connector for command-line
tools or any application linked with the library.
Also, add 'make check-vol' support for all directories, clearing up necessary
issues in testing scripts, etc.
* commit '5ad3891d9b861593ebe25d540bed2d913eb83aba':
Remove ' ' (typo).
Code improvement
Removed an extra "using" statement
Adding documentation
More changes to align with incoming selection improvements.
Added C++ wrapper for H5Ovisit2
Adding a C++ wrapper
* commit 'b4d4d371a03158c39f120b1bde6c4bd51f1b2eb6':
HDFFV-10443: Add "field" parameter to H5Oinfo* and H5Ovisit* APIs.
Added chunked dataset, H5S_ALL test
typo
typo
updated defined constants
Documented HDFFV-10652
HDFFV-10652 Implemented a process-0 read and then broadcast for collective read of full datasets (H5S_ALL) by all the processes in the file communicator.
Removed reason for breaking read-proc0-and-bcast
switched to using CX instead of a global var.
HDFFV-10652 Implemented a process-0 read and then broadcast for collective read of full datasets (H5S_ALL) by all the processes in the file communicator.
h5fget_obj_count_f with H5F_OBJ_ALL_F counted objects created in h5open_f, which should not be included in the count. The function now returns the correct number of objects (i.e., objects created in h5open are not included in the total).
* commit 'd184e6db94163dcc8761182744a6c524a4850887':
Removed unused H5MF functions and updated FUNC_ENTER macros and naming in H5MFsection.c.
Correct script names
Fix typo
Minor H5FS tweaks.
Put back CTRL-L chars
Update support link
Update text
Valgrind fixed by checking for prefix_len of 0
* commit '2b0fb7e3f1f7da5b23d430702493ed4fb7f87166': (21 commits)
HDFFV-9739 only executes H5E tests in production
Remove link flag from compile command
fix typo
Add release note
Correct attribute location
HDFFV-9739 fix copy testfiles command
HDFFV-9739 remove obsolete test files
HDFFV-9739 dup test file for concurrent tests
HDFFV-9739 Fix autotools script
HDFFV-9739 Change autotools test scripts
Fix typo
HDFFV-9739 Update test reference
Update current windows test machines
HDFFV-9739 Grab err number before API call
HDFFV-9739 Add release note
Adjust test names for concurrent tests
Fix soversion
HDFFV-9739 Fix copy name
HDFFV-9739 factor out tests into separate JUnit
Updated the threadsafety test to use error macros instead of asserts.
...
* commit 'dcc66a4f157ace0858b788228550f3e104df3242': (35 commits)
GGC requires attribute before function
Correct COMPILE defs usage
Add missing module_dir property
Text cleanup
Correct sentence punctuation.
Add release note.
Use set_property for MT flag
Correct command usage
Remove APPEND
Fix typo
Add missing test lib
add missing folder to path
Fix another command revert
Missed a command revert
Revert to old style for LINK_FLAGS gen expr not working
LINK_FLAGS must be separate property sets
Fix link flags syntax
Revert refactor link flags
refactor link flags to interface
Refactor link flags
...
* commit '34e3e3ef17f29b721780941866a3ad4c261b7c05':
Whitespace changes
Whitespace and test reclassify
Move two more functions from unit tests
Reorder of tests for debug APIs option
HDFFV-10444 fix soversion numbers for libraries
Fix Java test for DEBUG_APIS
Use var instead of absolute number
