Updated.
configure.in:
Removed the test for -lxnet in the GASS-driver part. There is
no need for it and it does not exist in other machines like IRIX64.
configure:
Deriverd from configure.in.
----------------------
./configure.in
./src/H5config.h.in [REGENERATED]
The /usr/ncsa/{include,lib} directories are only added if they
actually exist. This fixes a warning on some systems.
Checks for the <pdb.h> header file and also for either the PDB or Silo
library, and if found prepares to compile the pdb2hdf program.
./config/distdep
Relative path names for include files are changed to base names since
the makefile contains the logic for searching and since it's likely
that building the .distdep files happed from a location other than
where they would be used in the file system.
./config/conclude.in
Fixed shell errors when `for' loops iterate over nothing for the
`uninstall' target.
./src/H5D.c
./src/H5Oefl.c
File names for the external files are added to the heap when the
dataset is created instead of when the object header is written. This
fixes a rare infinite recursion bug.
./src/H5FD.c
./src/H5FDpublic.h
Optimization to the free list causes H5FD_alloc() usage to go from >10
seconds to <0.4 second for one example (converting a 30MB equation of
state file from PDB to HDF5 format). The optimization is to simply
keep track of the largest item in the free list and not search the
free list when the largest item is not big enough to satisfy the
request.
./src/H5FDcore.c
./src/H5FDcore.h
./test/h5test.c
If the `backing_store' property is true then a flush causes the entire
contents of memory to be written to the specified file. This is in
preparation for the ASCI/red optimizations and is currently tested by
the pdb2hdf `--cached' switch.
./src/H5Odtypes.c
Wrapped three long lines.
./tools/Makefile.in
./tools/pdb2hdf.c [NEW]
A PDB-to-HDF5 translator. It only translates meta data -- the
resulting HDF5 points into the PDB file for the raw data.
----------------------
./src/H5FDcore.c
Includes private headers instead of public in order to use the
`UNUSED' macro.
./src/H5FDpublic.h
Includes H5public.h just in case.
./src/H5P.c
Removed two unused variables in H5P_copy()
./src/H5FDgass.h
Fixed a C++ comment after a `#endif'
./src/Makefile.in
The H5FDgass.h file is public and must be installed in order for
applications to be able to use HDF5.
./tools/h5tools.c
Removed an unused variable.
----------------------
./src/H5public.h
We undefine a bunch of things that could get redefined in the config
file because some customers have applications that include headers
from multiple packages, all of which might be using autoconf.
Include <stdint.h> for the C9x types.
./test/h5test.h
More flushing of stdout for when testing is redirected down a pipe.
./tools/h5ls.c
Added a `-S' or `--simple' switch which causes the output to be
simplified somewhat for easier parsing by other scripts. For instance,
characters are escaped using a very simple mechanism instead of C's
more complicated backslash notation, data doesn't have `{}' or `[]'
characters interspersed for compound and array types, and data is
printed with exactly one element per line. This switch is now used by
an HDF5-to-HTML CGI script being developed for the DMF people.
./tools/h5tools.c
./tools/h5tools.h
The repeat threshold which controls how strings are printed when a
character repeats a bunch of times is now settable at runtime instead
of compile time. The default is to show all characters, like
"abceeeeeeeeeeeeeeeeeeeeeeeeeeeeeefgh"
But if you set it to something like 5 then any sequence of 5 or more
characters is replaced by something shorter, like:
"abc" 'e'x30 "fgh" or
Added an `str_locale' property which describes how to escape special
characters in strings. The default is C-like escapes but an
alternative is ESCAPE_HTML which replaces all non-alphanumeric
characters with a 3-character HTML escape of the form `%XX'
Fixed a bug where empty strings didn't even have the quote characters
printed. Now empty strings show up as `""' instead of absolutely
nothing.
Added a `per_line' property which controls the maximum number of
elements which will appear per line of output. The default is infinity
but in practice the right margin causes line breaks. By setting the
`per_line' value to one and the right margin to a very large value one
can achieve output with exactly one element per line.
