Commit Graph

1154 Commits

Author SHA1 Message Date
Allen Byrne
5f4562b2ea [svn-r24954] HDFFV-8700: lowercase CMake commands 2014-04-03 10:34:08 -05:00
Scot Breitenfeld
e26b78a04b [svn-r24953] Fixed --enable-production compilation error using Sun compilers.
Tested (emu)
2014-04-03 10:18:42 -05:00
Scot Breitenfeld
b0bdd25417 [svn-r24952] Fixed -i8 -r8 error with optimization on jam using intel compiler.
Tested: jam (intel)
2014-04-03 10:01:21 -05:00
Scot Breitenfeld
b87b1c965d [svn-r24951] Changed ordering of initiation of variable to remove warnings using sun compilers.
Tested: emu
2014-04-03 09:35:54 -05:00
Allen Byrne
98bbf4a36a [svn-r24948] Group tests by Common name
Remove WIN32 AND NOT CYGWIN if blocks - should be just WIN32

Tested: local linux CMake
2014-04-02 13:35:01 -05:00
Scot Breitenfeld
5555f057ae [svn-r24945] Fixed failed test on jam with intel compilers and -i8 -r8
Tested: jam (intel)
2014-04-02 09:17:14 -05:00
Scot Breitenfeld
c86aedeba1 [svn-r24939] Fix for HDFFV-8309 Fortran wrappers for H5Pget/set_file_image functions
Tested: jam (gnu, intel, pgi)
2014-04-01 10:15:26 -05:00
Dana Robinson
d01ee66666 [svn-r24937] Adds an H5free_memory() function to the library for use with
functions that return library-allocated memory. The test and tool
code were modified to use this new function where it's appropriate.

Fixes HDFFV-7710, HDFFV-8519, and HDFFV-8551

Tested on:
    64-bit Windows 7 w/ VS2012
    32-bit LE linux w/ parallel and fortran (jam)
    32-bit LE linux w/ fortran and C++ (jam)
2014-03-31 18:35:09 -05:00
Allen Byrne
c6fe8c70b2 [svn-r24932] HDFFV-8290: Remove unnecessary $(srcdir) and use AM_CPPFLAGS instead of INCLUDES. Update automake to 1.14.1
h5committest
2014-03-31 12:07:05 -05:00
HDF Tester
d6cd6cabc2 [svn-r24924] Snapshot version 1.9 release 175 2014-03-30 04:18:22 -05:00
Allen Byrne
448e1e05f1 [svn-r24904] Revert includes move 2014-03-26 09:38:18 -05:00
Allen Byrne
1e1f754fb0 [svn-r24903] Correct mod install lists
Tested: local linux
2014-03-26 09:36:08 -05:00
Allen Byrne
9db0c02b96 [svn-r24899] Add msmpi fortran libs to FindMPI 2014-03-25 16:57:30 -05:00
Allen Byrne
425408b5a1 [svn-r24895] Add INTERFACE properties to libs 2014-03-25 13:25:53 -05:00
Scot Breitenfeld
8b27024edd [svn-r24888] Cleaned-up warning errors using --enable-fortran only and gcc 4.8.2
tested: gcc (4.8.2, jam)
2014-03-24 16:20:14 -05:00
Allen Byrne
63e1b32068 [svn-r24886] Fix fortran mod file handling and packing 2014-03-24 16:00:34 -05:00
Allen Byrne
810285be8e [svn-r24876] Move includes command up before all programs 2014-03-24 11:29:13 -05:00
Scot Breitenfeld
958a762dd1 [svn-r24866] Fixed compiler warnings using gnu 4.8.1
Tested: jam( intel, gnu, pgi)
2014-03-22 15:01:58 -05:00
Quincey Koziol
2e4302818a [svn-r24864] Description:
Remove all traces of MPI-POSIX VFD and GPFS detection/code.

    Remove remaining traces of stream VFD.

    Remove testpar/t_posix_compliant test (it's not actually verifying anything).

    Clean up H5D__mpio_opt_possible() further.

    Moved environment variable that disables MPI collective operations into
MPI-IO VFD (instead of it being in src/H5S.c).

    A few other small code cleanups.

Tested on:
    Mac OSX/64 10.9.2 (amazon) w/parallel & serial
2014-03-21 18:02:24 -05:00
Allen Byrne
c4f982abf1 [svn-r24859] Remove unnecessary use of $(srcdir).
Tested: local linux, h5committest
2014-03-21 13:50:30 -05:00
Scot Breitenfeld
6515a1f8ac [svn-r24856] added missing common statement 2014-03-21 09:34:05 -05:00
Scot Breitenfeld
6c13c99ce9 [svn-r24855] added missing dllexport 2014-03-21 09:28:03 -05:00
Scot Breitenfeld
34bfba14d5 [svn-r24846] Bug fix for HDFFV-8689 : Mix-match of type in H5D_CHUNK_CACHE_NBYTES_DEFAULT, Review HDF5-184
Tested with -i8 flag with intel compilers and --enable-production
2014-03-20 09:06:42 -05:00
Allen Byrne
03d10edd23 [svn-r24824] HDFFV-8700 -
KitWare recommendations: Change CMake commands to lower case.
Bump up CMake minimum versions.
Split test file into separate file for h5repack test.

Tested: local linux
2014-03-18 11:21:46 -05:00
Allen Byrne
f5689224b5 [svn-r24789] Bump up the minimum cmake version 2014-03-13 10:05:09 -05:00
Scot Breitenfeld
b17f3e4183 [svn-r24783] fixed typo 2014-03-12 09:20:47 -05:00
Allen Byrne
6c5e74942d [svn-r24782] HDFFV-8700 -
KitWare recommendations: Change CMake commands to lower case.
2014-03-11 17:07:13 -05:00
Allen Byrne
a3292a77ce [svn-r24781] HDFFV-8700 -
KitWare recommendations: Change CMake commands to lower case.
Remove INCLUDE_DIRECTORIES in src for target level includes.
Change ADD_DEFINITIONS package debug defines into CMake option.
Remove -DNDEBUG
2014-03-11 16:14:57 -05:00
HDF Tester
4a9ea60adc [svn-r24770] Snapshot version 1.9 release 174 2014-03-09 05:17:47 -05:00
HDF Tester
f683d9a035 [svn-r24753] Snapshot version 1.9 release 173 2014-03-02 04:16:37 -05:00
Quincey Koziol
1162465570 [svn-r24727] Description:
Revert change of sprintf -> snprintf, due to failures on Windows.  We'll
need to figure out the correct course of action in the future.

Tested on:
    MacOSX/64 10.9.1 (amazon) w/C++, FORTRAN
    (too minor to require h5committest)
2014-02-21 11:53:33 -05:00
Quincey Koziol
1e36b5a348 [svn-r24726] Description:
Revert some earlier usage of strncpy, which was incorrect.

    Bring Coverity changes from branch back to trunk:

r20821:
    Use HDstrncpy. --gh
    (Fixed already, with strdup)

r20822:
    (Not merged, incorrect use of HDstrncpy())

r20823:
    (Not merged, incorrect use of HDstrncpy())

r20824:
    Maintenance: Bug fix: addressed CID 666.
    Value stored at *expression_len should be used in the call to
        HD5packFstring to avoid overflow (and unnecessary arithmetic
        calculation and casting) 

r20825:
    Issue 642: Added check for error and handler with print to stderr and exit.

r20826:
    Undo revision 20818, as that issue has already been fixed in the 1.8 branch
        and trunk (but not coverity branch)

r20827:
    (Not merged, incorrect use of HDstrncpy())
    
r20828:
    Use HDstrncpy. --gh
    (Corrected use of strncpy())

r20829:
    Check return of H5Lget_val(print_udata->fid, path, targbuf,
        linfo->u.val_size + 1, H5P_DEFAULT) and if error set trgbuf[0] to 0.
        Check if  H5Lunpack_elink_val(targbuf, linfo->u.val_size, NULL,
        &filename, &objname) was successful and allow print. Otherwise filename
        and objname are not created. (init those to NULL)

r20830:
    resolved coverity issues 939, 940, 941, 944, and 947.

    all were complaints about use of sprintf, and in all cases, the
    buffers used were large enough for all eventualities.

    Resolved issue by replacing calls to sprintf with calls
    to snprintf.

r20831:
    Maintenance: Addressed CID 852
    Replaced sprintf with snprintf

r20832:
    Purpose: Fix valgrind issues with hl/examples/ex_image2

    Description:
    Modified hl/examples/ex_image2 to free global "gbuf" before exit.

Tested on:
    Mac OSX/64 10.9.1 (amaon) w/C++, FORTRAN & Threadsafety
    (too minor to require h5committest)
2014-02-20 16:29:26 -05:00
HDF Tester
d7f00b8002 [svn-r24716] Snapshot version 1.9 release 172 2014-02-16 03:32:48 -05:00
HDF Tester
1b6683e58f [svn-r24698] Snapshot version 1.9 release 171 2014-02-09 03:36:37 -05:00
Scot Breitenfeld
ecc60884a8 [svn-r24697] Fix for:
HDFFV-8651: H5F_Provisional missing from HDF5mpio.f90

Tested: jam (mpi 3.0.4/gnu)
2014-02-07 16:45:23 -05:00
Allen Byrne
6569d7437a [svn-r24682] Add IF SHARED block around Windows PDB file generation command. 2014-02-04 10:11:36 -05:00
HDF Tester
ddf75b10f6 [svn-r24676] Snapshot version 1.9 release 170 2014-02-02 03:34:20 -05:00
Scot Breitenfeld
4a428e25b8 [svn-r24636] typesetting changes for documentation 2014-01-17 16:10:29 -05:00
Scot Breitenfeld
d4d0407a87 [svn-r24623] Enabled test for
HDFFV-8268 Fortran wrapper for H5Fget_file_image function

Tested: jam (pgi compilers)
        h5committest
2014-01-08 15:21:32 -05:00
Scot Breitenfeld
1febc8a453 [svn-r24611] This is a partial fix for HDFFV-8634. It fixes the problem without --enable-fortran2003, where the optional parameter should not be given as an option for an interface to a C function. --enable-fortran2003 does not work due to a compiler bug in intel 14.0
Tested: kite (intel 14.0 with --enable-fortran)
2014-01-06 10:53:56 -05:00
HDF Tester
bc09cdc302 [svn-r24465] Snapshot version 1.9 release 169 2013-11-24 22:31:26 -05:00
Allen Byrne
819b8099e2 [svn-r24392] Cleanup testfiles from scripts. Update lists of files to be cleaned. CMake update to clean testfiles.
Tested: local cmake, autools, and h5committest
2013-11-01 16:15:37 -05:00
Dana Robinson
e6cace9ee4 [svn-r24376] Updated all code to use HDmalloc, HDcalloc, and HDfree.
Prep work for adding a memory free function, part of HDFFV-8551.

Tested on:
    32-bit LE linux (jam) 
        * with C++, Fortran
        * with thread safety on

    These are minor changes (almost entirely renaming foo functions
    to HDfoo) that don't change functionality.  This should not
    require a full commit test.
2013-10-30 23:20:36 -05:00
HDF Tester
56803a1970 [svn-r24362] Snapshot version 1.9 release 168 2013-10-27 04:33:34 -05:00
HDF Tester
8538cf61f9 [svn-r24334] Snapshot version 1.9 release 167 2013-10-20 04:21:31 -05:00
HDF Tester
5092f5a30e [svn-r24287] Snapshot version 1.9 release 166 2013-10-13 03:43:04 -05:00
HDF Tester
a4ab8b0e1d [svn-r24218] Snapshot version 1.9 release 165 2013-09-29 03:41:59 -05:00
Larry Knox
ab239810e1 [svn-r24194] Don't add hdf5 library dependencies to lib files when --disable-sharedlib-rpath configure option is invoked. Fix for HDFFV-8276.
Tested with h5committest and on hdf-duck.
2013-09-23 20:14:24 -05:00
HDF Tester
f9a758f442 [svn-r24186] Snapshot version 1.9 release 164 2013-09-22 04:17:20 -05:00
Larry Knox
2c6fc585fd [svn-r24114] Reverting the changes in r24113 for now because they break parallel make fortran. The changes aren't incorrect, but more work in needed on dependencies and also for enable-parallel.
Reverted to r24112.
2013-09-06 17:42:10 -05:00
Quincey Koziol
f825256c87 [svn-r24113] Description:
Reduce warnings w/gfortran in FORTRAN build by declaring interface for
utility test routines.

Tested on:
    Mac OSX/64 10.8.4 (amazon) w/gcc/g++/gfortran 4.8
2013-09-06 15:27:13 -05:00
Quincey Koziol
5b876c929f [svn-r24101] Description:
Clean up warnings, enable new compiler warning flag(s) and bring back
changes from Coverity branch:

r20813:
Remove the dead code as listed for coverity bug #1722. h5committested.

r20814:
Issue 69: Check return value and throw error if negative return. Also free datatype id on error

r20815:
Use HDstrncpy. --gh

r20816:
Replaced one last HDstrcat call with HDstrncat to resolve coverity issue 832.

r20817:
Use HDstrncpy and HDstrncat. --gh

r20818:
Purpose: Fix valgrind issues with h5jam

Description:
Modified h5jam to free strings strdup'd in parse_command_line before exit. Note
that they may still not be freed in case of error, due to the widespread use of
exit().

r20819:
Issue 80: change loop to use int as loop index.

r20820:
Maintenance: Fixed the bug found by coverity CID 788
There were two problems with this function:
    1) it tried to unnecessary free NULL pointer
    2) it tried to allocate c_name buffer that is done by H5Pget_class_name


Tested on:
    Mac OSX 10.8.4 (amazon) w/gcc 4.8.1, C++ & FORTRAN
    (too minor to require h5committest)
2013-09-05 15:44:14 -05:00
HDF Tester
a4294ab3cc [svn-r24092] Snapshot version 1.9 release 163 2013-09-01 03:37:42 -05:00
Larry Knox
d24404ae83 [svn-r24077] Updated -help output for compile scripts for changing default from -noshlib to -shlib when hdf5 is built without static libraries (--disable-static).
Tested with h5committest on jam, koala, ostrich and platypus.
2013-08-27 08:26:37 -05:00
HDF Tester
ca60bda9fb [svn-r24068] Snapshot version 1.9 release 162 2013-08-25 03:44:51 -05:00
Allen Byrne
c502d81a8c [svn-r24029] Move TESTS to seperate file to allow easier editing by all developers.
Tested: local linux
2013-08-19 16:49:44 -05:00
Quincey Koziol
308c378ccd [svn-r24020] Description:
Clean up compiler warnings

Tested on:
    Mac OSX/64 10.8.4 (amazon) w/C++ & FORTRAN
    (too minor to require h5committest)
2013-08-17 15:05:27 -05:00
Allen Byrne
33d5f5d1e8 [svn-r24004] HDFFV-8319 and -8321: Cleanup autotools code.
Also remove GetConsoleScreenInfo check from cygwin configure.

Tested: h5committest
2013-08-13 12:53:23 -05:00
HDF Tester
407d3db6a4 [svn-r23989] Snapshot version 1.9 release 161 2013-08-11 03:37:02 -05:00
HDF Tester
f1b5d46cd0 [svn-r23968] Snapshot version 1.9 release 160 2013-08-04 03:35:17 -05:00
HDF Tester
f26b04712e [svn-r23926] Snapshot version 1.9 release 159 2013-07-21 03:38:01 -05:00
HDF Tester
4e12ec74ae [svn-r23895] Snapshot version 1.9 release 158 2013-07-14 03:31:23 -05:00
HDF Tester
3cb8efae13 [svn-r23865] Snapshot version 1.9 release 157 2013-07-07 03:33:31 -05:00
HDF Tester
a157eb2f68 [svn-r23849] Snapshot version 1.9 release 156 2013-06-30 03:35:12 -05:00
HDF Tester
6fedfb6124 [svn-r23806] Snapshot version 1.9 release 155 2013-06-23 03:36:24 -05:00
HDF Tester
bdbd06d85d [svn-r23778] Snapshot version 1.9 release 154 2013-06-16 03:34:51 -05:00
Allen Byrne
feb14ea872 [svn-r23745] HDFFV-8461: Add Windows /MT support
This adds the UserMacros.cmake support needed.
2013-06-10 12:46:48 -05:00
HDF Tester
70d440330d [svn-r23741] Snapshot version 1.9 release 153 2013-06-09 03:39:22 -05:00
HDF Tester
177a90f97a [svn-r23718] Snapshot version 1.9 release 152 2013-05-26 03:56:00 -05:00
HDF Tester
c09748b14e [svn-r23708] Snapshot version 1.9 release 151 2013-05-19 03:39:09 -05:00
HDF Tester
8f3aee85de [svn-r23669] Snapshot version 1.9 release 150 2013-05-05 03:32:05 -05:00
HDF Tester
1f09e9d19e [svn-r23642] Snapshot version 1.9 release 149 2013-04-28 03:37:26 -05:00
Allen Byrne
ed5a2bc1c1 [svn-r23614] Remove subfolders for includes 2013-04-23 12:50:15 -05:00
Scot Breitenfeld
c61fb7260a [svn-r23585] changed the integer kind in the enum to satisfy g95.
Tested: jam (g95, gfortran)
2013-04-14 16:19:40 -05:00
Scot Breitenfeld
337242feea [svn-r23576] added missing argument in check call.
tested: jam (g95,gcc))
2013-04-11 14:40:57 -05:00
Larry Knox
0b16cecb99 [svn-r23527] Revised usage to reflect change to use -shlib as default when no static libraries were built.
No test - text only revision of compile scripts.
2013-04-02 17:54:20 -05:00
Scot Breitenfeld
1b6963230b [svn-r23516] Updated documentation. 2013-04-01 19:58:44 -05:00
Raymond Lu
6c974c824d [svn-r23495] ported revisions 23433:23494 from the trunk 2013-03-29 18:13:05 -05:00
Larry Knox
99b1524474 [svn-r23431] Fix for HDFFV-8141.
Changes default value for USE_SHARED_LIB in compile scripts to yes when static is disabled.
Comments in scripts about the order of flag variables containing library paths was also corrected.

Tested with h5committest on duck, jam, koala, and ostrich in addition to specific testing for the 
compile script change.
2013-03-22 16:02:07 -05:00
Scot Breitenfeld
626fb1b02f [svn-r23379] HDFFV-8297 h5fc does not recognize files ending in .f95, .f03, and .f08 as source files
added missing extensions.

Tested: jam (gnu)
2013-03-18 23:14:59 -05:00
HDF Tester
e188e7797b [svn-r23361] Snapshot version 1.9 release 148 2013-03-17 03:28:21 -05:00
HDF Tester
c896a5b7eb [svn-r23341] Snapshot version 1.9 release 147 2013-03-10 04:34:50 -05:00
Scot Breitenfeld
ebb18c5186 [svn-r23325] Description
------------

Fix for:
HDFFV-8149: h5pset_external_f API - the offset is declared integer which can cause problem if use 64-bit integer  

Added new type off_t, modified source files and added a new test.

Tested (jam, intel, gnu)
2013-03-05 00:06:59 -05:00
HDF Tester
1cffcb401a [svn-r23323] Snapshot version 1.9 release 146 2013-03-03 11:20:00 -05:00
HDF Tester
66ba0b4f33 [svn-r23311] Snapshot version 1.9 release 145 2013-02-24 11:26:03 -05:00
Allen Byrne
aff5c20a6a [svn-r23305] HDFFV-8257: szip still used even if headers are not found. Change configure to test the result of the CHECK HEADERS call before checking for the library.
Tested: local linux, h5committest
2013-02-18 15:56:21 -05:00
Scot Breitenfeld
f3da4919c4 [svn-r23297] Temporary fix: PGI COMPILERS seem to have a bug in the INQUIRE function,
waiting for an answer from PGI how to resolve the problem.

Tested: jam (pgi compiler)
2013-02-18 10:28:36 -05:00
Scot Breitenfeld
2ec529c035 [svn-r23296] Fix HDFFV-8312: Problem using NAG compiler and F2003 interface
added character bounds for C_LOC arguments.

Tested: jam (gnu)
2013-02-17 22:46:06 -05:00
Scot Breitenfeld
4e08487549 [svn-r23295] Did not intend to check in this file with the previous ci.
reverted check in.
2013-02-17 22:10:17 -05:00
Scot Breitenfeld
a4521b7901 [svn-r23294] Related to: HDFFV-8265
Fortran2003 option does not work under windows; Need to manage .def files more efficiently

Changed the comment notes from adding to the 'hdf5_fortrandll.def' to instead adding
to the 'hdf5_fortrandll.def.in' file.
2013-02-17 21:22:29 -05:00
Scot Breitenfeld
a976ca99a9 [svn-r23293] Fix for HDFFV-8268: Fortran wrapper for H5Fget_file_image function.
Tested: (jam, gnu,intel compilers)
2013-02-17 21:01:18 -05:00
HDF Tester
32da9c96ae [svn-r23290] Snapshot version 1.9 release 144 2013-02-17 11:30:06 -05:00
Scot Breitenfeld
9d07161dd9 [svn-r23248] Made modification of comments for h5rget_name_*f for the loc_id identifier.
Cleaned up comments.
2013-02-11 20:28:08 -05:00
HDF Tester
944f0399ac [svn-r23240] Snapshot version 1.9 release 143 2013-02-10 11:25:10 -05:00
Scot Breitenfeld
386f73823a [svn-r23236] Fix for: HDFFV-8223
Write a Fortran test for conversion fron enum to numeric type 

Tested (jam, gnu, intel)
2013-02-07 19:28:55 -05:00
HDF Tester
b65a911b8a [svn-r23221] Snapshot version 1.9 release 142 2013-02-03 11:20:03 -05:00
HDF Tester
37d1a0330a [svn-r23180] Snapshot version 1.9 release 141 2013-01-20 11:23:56 -05:00
Allen Byrne
2fba171a67 [svn-r23160] HDFFV-8227: Mac DARWIN requires CMake 2.8.10 2013-01-14 13:35:30 -05:00
HDF Tester
2381dacdad [svn-r23153] Snapshot version 1.9 release 140 2013-01-13 11:18:18 -05:00
HDF Tester
c1b0e4f686 [svn-r23136] Snapshot version 1.9 release 139 2013-01-06 11:19:19 -05:00