Commit Graph

17570 Commits

Author SHA1 Message Date
Dana Robinson
3313fde3bb Normalize with trunk prior to update merge 2018-04-30 15:15:14 -07:00
Dana Robinson
4fe4394c58 Fixed a warning. 2018-04-30 15:04:45 -07:00
Dana Robinson
27f2a961f1 Finished move of H5DOread/write_chunk calls to H5D. 2018-04-30 09:34:53 -07:00
Dana Robinson
09b1106e39 First stage of moving H5DOread/write_chunk() to src/ and making
them H5D calls.
* Moved H5DOread/write_chunk() to H5Dio.c and renamed to H5D*.
* Moved the hl/test/test_dset_opt test to test/ and renamed to
  direct_chunk.
* Moved the hl/test/dectris_hl_perf test to tools/test/perform
  and renamed to direct_write_perf.
* Updated autotools and CMake files.
2018-04-30 07:52:07 -07:00
Quincey Koziol
fa829e322e Merge pull request #1035 in HDFFV/hdf5 from fix_api_context_filter_plugin to develop
* commit '76cab1f5cb48af8398e1c09c15a974b1f8347da4':
  Fix non-threadsafe API context head pointer handling.
2018-04-18 22:53:18 -05:00
Quincey Koziol
76cab1f5cb Fix non-threadsafe API context head pointer handling. 2018-04-18 22:33:57 -05:00
Quincey Koziol
e217bd113d Merge pull request #1034 in HDFFV/hdf5 from fix_api_context_fix to develop
* commit 'bcab84db9f291920ed0fe321116405f73eaddfa5':
  Resolve memory leak of last API context, by freeing it in H5CX terminate routine.
  Revert "Close memory leak of last API context when shutting library down."
2018-04-18 06:41:14 -05:00
Quincey Koziol
bcab84db9f Resolve memory leak of last API context, by freeing it in H5CX terminate
routine.
2018-04-17 22:55:45 -05:00
Quincey Koziol
188539f65e Revert "Close memory leak of last API context when shutting library down."
This reverts commit 0bd3634dc5.
2018-04-17 22:39:20 -05:00
Quincey Koziol
61a2456995 Merge pull request #1033 in HDFFV/hdf5 from fix_h5cx_pop_special_leak to develop
* commit '0bd3634dc5747d88582a966050896bad57acb892':
  Close memory leak of last API context when shutting library down.
2018-04-17 13:50:57 -05:00
Quincey Koziol
0bd3634dc5 Close memory leak of last API context when shutting library down. 2018-04-17 12:01:26 -05:00
Allen Byrne
1fc45adaf4 Merge pull request #1030 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '9a8e1e1a7cad7674de2b183ba530affc0f13c615':
  Add missing file
2018-04-12 11:48:20 -05:00
Allen Byrne
9a8e1e1a7c Add missing file 2018-04-12 09:10:28 -05:00
Allen Byrne
9cd4e23ce7 Merge pull request #1024 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '34e3e3ef17f29b721780941866a3ad4c261b7c05':
  Whitespace changes
  Whitespace and test reclassify
  Move two more functions from unit tests
  Reorder of tests for debug APIs option
  HDFFV-10444 fix soversion numbers for libraries
  Fix Java test for DEBUG_APIS
  Use var instead of absolute number
2018-04-11 15:09:32 -05:00
Allen Byrne
34e3e3ef17 Whitespace changes 2018-04-10 13:06:29 -05:00
Allen Byrne
c4ff69d26b Whitespace and test reclassify 2018-04-10 13:01:49 -05:00
Allen Byrne
a9662ba9fb Move two more functions from unit tests 2018-04-10 12:43:43 -05:00
Scot Breitenfeld
f03522c4d7 Merge pull request #1023 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:develop to develop
* commit '05ef85b02dc88ebd738d1332476ae1765a25b191':
  fixed return integer type of C function
2018-04-10 11:21:54 -05:00
M. Scot Breitenfeld
05ef85b02d fixed return integer type of C function 2018-04-10 10:54:31 -05:00
Allen Byrne
f015c89c5e Reorder of tests for debug APIs option 2018-04-10 10:27:03 -05:00
Allen Byrne
db3d744f25 HDFFV-10444 fix soversion numbers for libraries 2018-04-10 08:55:17 -05:00
Allen Byrne
057a4e7fd6 Fix Java test for DEBUG_APIS 2018-04-09 15:07:29 -05:00
Allen Byrne
38cccb23ba Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '3211e907f4f9349ba7510d70cfbcc6ee36d99c58':
  Remove vestiges of H5_DEBUG_BUILD macro, switching it to the more standard H5CX_DEBUG form.
  Minor warning cleanup while working on VOL issues.
2018-04-09 07:14:53 -05:00
Quincey Koziol
3211e907f4 Merge pull request #1019 in HDFFV/hdf5 from ~KOZIOL/hdf5:update_api_context to develop
* commit '62b4200f580e9ea0b95cbc218bfae50ae38ef25d':
  Remove vestiges of H5_DEBUG_BUILD macro, switching it to the more standard H5CX_DEBUG form.
2018-04-06 17:31:00 -05:00
Quincey Koziol
62b4200f58 Remove vestiges of H5_DEBUG_BUILD macro, switching it to the more
standard H5CX_DEBUG form.
2018-04-06 17:19:29 -05:00
Dana Robinson
051c5fa9b3 Merge pull request #1018 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop to develop
* commit '02039e0a91cf1baae46d52a77c521fc6357b7c90':
  Minor warning cleanup while working on VOL issues.
2018-04-06 11:12:06 -05:00
Allen Byrne
5e943e85e2 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '048ae59d2970dd21810577c999f756c028b6faaf':
  Correct errors with non-"instrumented library" builds (production & parallel, generally speaking).
  Update java error stack tests
  Revert using H5MF_sect_small_can_shrink and H5MF_sect_small_shrink for the file's free space manager (and add a comment about them).
  Add comment for the file flush when the file low / high bounds are changed after a file is open.
  Expanded comments abuot H5CX_t fields.
  Add an assert to verify that we don't write when between MPI_Barrier() calls during a flush.
  Add comments for internal structs.
  Remove redundant 'is_collective' parameter from H5CX_set_loc.
  Correct typo in comment.
  Revert some tangential code cleanups.
  Add API context source files to CMake configuration file.
  Corrections for parallel I/O & tests.
  Update handling of reporting for breaking collective I/O when the default DXPL is used.
  Update encoded DXPLs to reflect changes in properties.
  Correct typo for error checking malloc return value.
  Refactor H5CX code to reduce duplication.
  Cleanup API context function usage.
  Add API context interface and use it throughout the library.
2018-04-06 09:21:06 -05:00
Dana Robinson
02039e0a91 Minor warning cleanup while working on VOL issues. 2018-04-06 00:11:18 -07:00
Quincey Koziol
048ae59d29 Merge pull request #991 in HDFFV/hdf5 from merge_func_enter_vol to develop
Commit API context and related changes

* commit '01a783dbee8160641a5a682f2116ffbd1ac123fe':
  Correct errors with non-"instrumented library" builds (production & parallel, generally speaking).
  Update java error stack tests
  Revert using H5MF_sect_small_can_shrink and H5MF_sect_small_shrink for the file's free space manager (and add a comment about them).
  Add comment for the file flush when the file low / high bounds are changed after a file is open.
  Expanded comments abuot H5CX_t fields.
  Add an assert to verify that we don't write when between MPI_Barrier() calls during a flush.
  Add comments for internal structs.
  Remove redundant 'is_collective' parameter from H5CX_set_loc.
  Correct typo in comment.
  Revert some tangential code cleanups.
  Add API context source files to CMake configuration file.
  Corrections for parallel I/O & tests.
  Update handling of reporting for breaking collective I/O when the default DXPL is used.
  Update encoded DXPLs to reflect changes in properties.
  Correct typo for error checking malloc return value.
  Refactor H5CX code to reduce duplication.
  Cleanup API context function usage.
  Add API context interface and use it throughout the library.
2018-04-05 18:31:18 -05:00
Allen Byrne
01a783dbee Merge pull request #1015 in HDFFV/hdf5 from ~BYRN/hdf5_adb:merge_func_enter_vol to merge_func_enter_vol
* commit '8c9661ce4d42090fb12c26bedc01af9ecc10b8e2':
  Update java error stack tests
2018-04-05 14:54:34 -05:00
Quincey Koziol
9119e2034e Merge remote-tracking branch 'origin/develop' into merge_func_enter_vol 2018-04-05 13:45:39 -05:00
Quincey Koziol
b51f8e2acd Correct errors with non-"instrumented library" builds (production & parallel,
generally speaking).
2018-04-05 13:44:02 -05:00
Allen Byrne
f6a5236e43 Use var instead of absolute number 2018-04-05 08:16:13 -05:00
Larry Knox
fbcd6b6fd0 Merge pull request #1017 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
* commit 'fa0d7aec1030567f3daa5bd433c86f4dc326cb89':
  Update RELEASE.txt, HISTORY-1_10.txt and INSTALL files with changes from HDF5-1.10.2 release.
2018-04-04 11:26:22 -05:00
lrknox
fa0d7aec10 Update RELEASE.txt, HISTORY-1_10.txt and INSTALL files with changes from
HDF5-1.10.2 release.
2018-04-03 16:57:26 -05:00
Allen Byrne
8c9661ce4d Update java error stack tests 2018-04-03 10:40:54 -05:00
Quincey Koziol
fb3cfc0a79 Revert using H5MF_sect_small_can_shrink and H5MF_sect_small_shrink for the
file's free space manager (and add a comment about them).
2018-04-02 16:33:57 -05:00
Quincey Koziol
be51656400 Add comment for the file flush when the file low / high bounds are changed
after a file is open.
2018-04-01 13:04:37 -05:00
Quincey Koziol
d834e9158c Merge remote-tracking branch 'origin/develop' into merge_func_enter_vol 2018-04-01 12:47:58 -05:00
Dana Robinson
066b342af1 Merge pull request #1013 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:vol_normalization to develop
* commit 'b8f56d22dfd754715d10accc5997fe923bdb7593':
  Created internal functions for a couple of H5F calls.
2018-03-30 10:50:49 -05:00
Dana Robinson
b8f56d22df Created internal functions for a couple of H5F calls. 2018-03-30 01:11:19 -07:00
Quincey Koziol
84ed0b1d57 Merge remote-tracking branch 'origin/develop' into merge_func_enter_vol 2018-03-29 14:25:05 -05:00
Allen Byrne
73acad2919 Merge pull request #1006 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit 'ba043154e989fce8737df0f2e8999d32bf38e303':
  Correct email
  Update URLs
  Correct hdf5 reference
  Update CDash info
  Update CMake reference and check CDash reference
  Update URLs
  Update section on using CMake source package
2018-03-29 13:02:56 -05:00
Allen Byrne
8186a4f4d0 Merge pull request #1009 in HDFFV/hdf5 from ~LKURZ/hdf5_lck:develop to develop
* commit '8bfa19a8b53e7bf63605efc4c1fdb8aeff97ebce':
  update email address
2018-03-29 13:01:12 -05:00
Allen Byrne
ba043154e9 Correct email 2018-03-29 12:58:25 -05:00
L Kurz
8bfa19a8b5 update email address 2018-03-29 12:58:03 -05:00
Allen Byrne
b3c9bcf92f Update URLs 2018-03-29 12:16:28 -05:00
Allen Byrne
464c22c1f1 Correct hdf5 reference 2018-03-29 11:56:44 -05:00
Allen Byrne
ae48e4337f Update CDash info 2018-03-29 11:35:48 -05:00
Allen Byrne
f977c619d3 Update CMake reference and check CDash reference 2018-03-29 11:22:00 -05:00