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32703c9fc5
Commit Graph

588 Commits

Author SHA1 Message Date
Scot Breitenfeld
32703c9fc5 [svn-r27164] various bug fixes for DT 2015-06-08 16:13:15 -05:00
Scot Breitenfeld
8641814c4e [svn-r27154] fixed issue with mis-matching long double between Fortran and C 2015-06-05 17:17:13 -05:00
Scot Breitenfeld
043173a689 [svn-r27151] fixed __float128 errors 2015-06-04 15:26:02 -05:00
Scot Breitenfeld
4d500d4902 [svn-r27140] fixed interger*16 support 2015-06-03 09:13:58 -05:00
Scot Breitenfeld
f486fe1a49 [svn-r27137] svn merge -r27115:27135 https://svn.hdfgroup.uiuc.edu/hdf5/trunk 2015-06-02 09:46:51 -05:00
Mohamad Chaarawi
fc45d5fcb0 [svn-r27133] - Add a new attribute function characterstic for format: 
* H5_ATTR_FORMAT(X,Y,Z)  __attribute__((format(X, Y, Z)))
- Rename UNUSED attribute characterstic to H5_ATTR_UNUSED.
- Rename NORETURN attribute characterstic to H5_ATTR_NORETURN

tested with h5committest.
 2015-06-01 14:38:09 -05:00
Scot Breitenfeld
52e5579fba [svn-r27122] removed dependency on generatored fortran source code 2015-05-28 11:53:15 -05:00
Scot Breitenfeld
b1cf507c6d [svn-r27116] svn merge -r26937:27115 https://svn.hdfgroup.uiuc.edu/hdf5/trunk 2015-05-27 17:12:43 -05:00
Scot Breitenfeld
244784ab2c [svn-r27115] Moved testing KINDs and SIZEOFs to configure. 2015-05-27 17:07:18 -05:00
Quincey Koziol
8be8a708a3 [svn-r27084] Description: 
Clean up cache tests, to align w/v3 metadata cache changes

Tested on:
    MacOSX/64 10.10.3 (amazon) w/serial & parallel
    Linux/32 2.6.* (jam) w/serial & parallel
 2015-05-14 21:16:09 -05:00
Scot Breitenfeld
5e6d18e5be [svn-r26869] removed the --enable-fortran2003 option, it is now just --enable-fortran 2015-04-21 13:33:25 -05:00
Scot Breitenfeld
0cc9b0c79f [svn-r26825] Added include for preprocessing fortran files with configure definitions 2015-04-16 13:36:34 -05:00
Larry Knox
3032f3adf3 [svn-r26711] Recommitting revisions 26669 and 26670, removing VPATH and redundant /usr/include and lib in fcompile and link flags checks, now that I have run reconfigure. 
Also changed paths to h5cc, etc. in scripts to run installed examples from relative paths to absolute paths.

Tested with h5committest.
 2015-04-02 16:07:53 -05:00
Allen Byrne
45577d5693 [svn-r26660] HDFFV-9131: autotols rework 
Remove CXX_CONDITIONAL
remove unneeded/obsolete sections.

h5commtitest
 2015-03-30 13:55:21 -05:00
Allen Byrne
451a91e53b [svn-r26594] Merge macros and fortran changes from dual_binary feature. 
Tested: local linux
 2015-03-25 17:08:46 -05:00
Jerome Soumagne
1cd7c16a9d [svn-r26509] Run reconfigure after merges from autotools_rework branch. 2015-03-20 14:15:51 -05:00
Dana Robinson
7462a7ef1c [svn-r26329] Merge of r26069, r26070, and r26072 from the features/autotools_rework 
branch.

Removed the configure option that allows selective disabling of individual
internal filters (fletcher32, shuffle, etc.).

This feature mucked up the code with a lot of #ifdefs, saved very little space,
and was not scalable to a general scheme for library size reduction. We've
decided to remove the feature while we investigate a more general scheme for
decreasing the library size.

Part of: HDFFV-9086

Tested on: h5committest
 2015-02-27 07:50:38 -05:00
Mohamad Chaarawi
c4044e0c85 [svn-r26303] remove files with .clog2 extension generated by MPE when doing make clean. 2015-02-25 13:48:31 -05:00
Mohamad Chaarawi
0c29ac42cd [svn-r26279] re-commit 26260 that Dana moved out fixing the versioning of functions to work with v16 default API. 2015-02-23 10:14:43 -05:00
Dana Robinson
7e220930da [svn-r26276] Merged r26075-80, 86 from features/autotools_rework branch. 
Cleans up time functions in the autotools input files. Removed deprecated
gettimeofday() time zone code and configure processing. Also removed
some unused time function configure checks and defines.

Fixes: HDFFV-9083 and HDFFV-9085

Tested on: 32-bit linux, serial and parallel (jam)
           OS X (kite)
           Solaris (emu)
 2015-02-23 01:56:16 -05:00
Dana Robinson
f634105bdb [svn-r26271] Reverse merge of r26260 which was causing daily test failures. 
Tested on: jam w/ parallel and fortran
 2015-02-22 03:38:18 -05:00
Mohamad Chaarawi
fcd77ffe7e [svn-r26260] - add an attribute callback to call H5_term_library when MPI_COMM_SELF is destroyed. 
- add tests for above.
- this is a fix for HDFFV-883.

tested h5committest
 2015-02-20 16:33:48 -05:00
Mohamad Chaarawi
79d94c7bb7 [svn-r26222] call H5close before MPI_Finalize() and close some objects that could be potentially left open. 2015-02-18 16:17:15 -05:00
Allen Byrne
73bb11dda3 [svn-r26208] Update cmake minimums 2015-02-18 11:56:22 -05:00
Scot Breitenfeld
b28b5fade9 [svn-r26188] Merged autotools fixes into the trunk: 
HDFFV-9089, HDFFV-9091, HDFFV-9092, HDFFV-9094, HDFFV-9095
 2015-02-16 12:17:49 -05:00
Mohamad Chaarawi
74fbb9e327 [svn-r26180] merge configure fixes for HDFFV-9068,9069,9096,9097,9135 from autotools_rework branch: 
- Remove Infering parallel compilers (C and Fortran) from configure.ac
- Remove restriction to build shared with parallel
- Cleanup parallel sections in configure.ac
- remove large file support checks
- MPE fixes.

tested with h5committest.
 2015-02-16 11:17:03 -05:00
Mohamad Chaarawi
50c5f1ab2c [svn-r25963] Do not remove the prefix in the chunk alloc file, otherwise it makes 
the H5Fcreate fail when prefix is specified.

tested parallel on Jam.
 2015-01-08 12:36:10 -05:00
Quincey Koziol
662892e8b1 [svn-r25928] Description: 
Minor code cleanups found while reviewing 'avoid_truncate' changes.

Tested on:
    MacOSX/64 10.10.1 (amazon) w/serial & parallel
    (too minor to require h5committest)
 2014-12-29 00:17:22 -05:00
Mohamad Chaarawi
cbd0460b1b [svn-r25921] - wrap MPI 3 usage with MPI_VERSION compile time check. 
- build out unbuffered stdout/err for windows
 2014-12-23 09:54:47 -05:00
Quincey Koziol
c0ec3bf38e [svn-r25884] Description: 
Minor code cleanups found while reviewing 'avoid truncate' branch.

Tested on:
    MacOSX/64 10.10.1 (amazon) w/serial & parallel
    (too minor to require h5committest)
 2014-12-10 22:00:08 -05:00
Mohamad Chaarawi
3ba28fb7ee [svn-r25790] fix bug in shapesame test where test fails with more than 10 
procs. This is a fix in the test itself and does not have to do with
the library code.

tested cloud machine with parallel.
 2014-11-05 10:47:44 -05:00
Mohamad Chaarawi
5362b49bec [svn-r25779] fix bug in parallel tests where a compact dset is being created 
proportional to the process count without regard to the 64KB limit for
compact datasets.

tested on jam with parallel.
 2014-11-04 12:52:38 -05:00
Mohamad Chaarawi
87bed2c752 [svn-r25651] Fix for: HDFFV-8715 
HDF5_PARAPREFIX is ignored in parallel dense attribute and performance tests.

tested on Jam w/ parallel.
 2014-10-01 17:02:41 -05:00
Mohamad Chaarawi
ace4fef4d6 [svn-r25573] fix error output when dataset verify detects wrong data. 2014-09-05 14:30:42 -05:00
Mohamad Chaarawi
8771fba1de [svn-r25503] - fix bug in encode/decode plist parallel test when 1 proccess is used to run the test. 
- fix warning in t_chunk_alloc.
 2014-08-01 14:24:52 -05:00
Quincey Koziol
33ea1ada24 [svn-r25496] Description: 
Merge 64-bit ID changes from branch to trunk.  (Plus a few minor cleanups
that aren't on the branch)

Tested on:
    Mac OSX/64 10.9.4 (amazon) w/C++ & FORTRAN
    (h5committested on branch already for a week)
 2014-07-30 15:55:14 -05:00
Mohamad Chaarawi
92cc75bfae [svn-r25401] add serial and parallel regression tests for zero dset read/write bug. 2014-07-09 14:01:25 -05:00
Mohamad Chaarawi
382976f3e9 [svn-r25398] add a check to make sure MPI_File_get_size() returns correct value (HDFFV-8856). 2014-07-09 10:19:11 -05:00
Mohamad Chaarawi
06ef71a37f [svn-r25397] - remove configure checks for MPI_File_get_size and Big 
MPI_File_set_size as they are supported by most MPI implementations.
- fix bug in t_mpi.c (HDFFV-8856)
 2014-07-07 13:22:48 -05:00
Allen Byrne
e23830d29f [svn-r25282] remove obsolete file 2014-06-13 16:16:34 -05:00
Allen Byrne
21474f8eee [svn-r25188] Implement change to cmake_ext_mod config folder 
Tested: local linux
 2014-05-14 14:50:28 -05:00
Allen Byrne
d517af5086 [svn-r25135] Remove property will fail - This only is true on windows shared. 2014-04-29 10:26:35 -05:00
Allen Byrne
9fd8692663 [svn-r25128] HDFFV-8172: Add tests properties that indicate it will fail and to depend on PASSED in the output. 2014-04-28 15:20:11 -05:00
Larry Knox
c6e3e68297 [svn-r25117] Removed LT_ADD_LIBHDF5_DEPENDENCY configure conditional to roll back fix for removing rpaths from l 
ib files.  The fix also removed dependencies on libhdf5, etc. when the --disable-sharedlib-rpath co
nfigure option was invoked.
Added instead configure variable hardcode_into_lib=no.  This removes rpath from lib files on Linux
and solaris machines.

Tested with h5committest on jam, koala, ostrich and platypus (cmake), and with configure option --disable-sharedlib-rpath on emu, platypus and quail.
 2014-04-25 16:59:53 -05:00
Quincey Koziol
7b6eae2ddf [svn-r25084] Description: 
Begin process of migrating from using property list IDs internally to the
library to using the internal generic property list data structure.

Tested on:
    Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & parallel
    (h5committest forthcoming)
 2014-04-23 11:30:25 -05:00
Allen Byrne
98bbf4a36a [svn-r24948] Group tests by Common name 
Remove WIN32 AND NOT CYGWIN if blocks - should be just WIN32

Tested: local linux CMake
 2014-04-02 13:35:01 -05:00
Allen Byrne
c6fe8c70b2 [svn-r24932] HDFFV-8290: Remove unnecessary $(srcdir) and use AM_CPPFLAGS instead of INCLUDES. Update automake to 1.14.1 
h5committest
 2014-03-31 12:07:05 -05:00
Quincey Koziol
2e4302818a [svn-r24864] Description: 
Remove all traces of MPI-POSIX VFD and GPFS detection/code.

    Remove remaining traces of stream VFD.

    Remove testpar/t_posix_compliant test (it's not actually verifying anything).

    Clean up H5D__mpio_opt_possible() further.

    Moved environment variable that disables MPI collective operations into
MPI-IO VFD (instead of it being in src/H5S.c).

    A few other small code cleanups.

Tested on:
    Mac OSX/64 10.9.2 (amazon) w/parallel & serial
 2014-03-21 18:02:24 -05:00
Allen Byrne
f5689224b5 [svn-r24789] Bump up the minimum cmake version 2014-03-13 10:05:09 -05:00
Allen Byrne
6c5e74942d [svn-r24782] HDFFV-8700 - 
KitWare recommendations: Change CMake commands to lower case.
 2014-03-11 17:07:13 -05:00