Commit Graph

10998 Commits

Author SHA1 Message Date
Elena Pourmal
a4487662b0 [svn-r16110] VMS maintenance: Brought command files up-to-date 2008-11-19 15:32:37 -05:00
Elena Pourmal
0dc6e37459 [svn-r16107] Maintenance: Brought up command file up-to-date. 2008-11-19 15:17:47 -05:00
Elena Pourmal
0c72ceea96 [svn-r16105] Bug fix:
h5vers script overwrote the value for windows file; fixed
2008-11-19 14:30:29 -05:00
Elena Pourmal
5d115960b6 [svn-r16100] Maintenance: Library version number in vms/src/h5pubconf.h
was not updated automatically and therefore
             was always outdated. Modified h5vers script to update
             the version for the VMS configuration file as we do for 
             the similar windows file.
Platforms tested: 
             kagiso with bin/h5vers
2008-11-19 11:23:56 -05:00
Mike McGreevy
f804d20446 [svn-r16095] Purpose: Updating bin/reconfigure script
Updating bin/reconfigure script to point to autotools in /mnt/hdf/packages, 
    since /home1/packages no longer exists.

Tested: kagiso
2008-11-18 15:19:10 -05:00
Quincey Koziol
a19434caa0 [svn-r16094] Description:
Add initial support for data block 'page init' bitmasks to super
blocks.

Tested on:
        Mac OS X/32 10.5.5 (amazon) in debug mode
        Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
2008-11-17 22:42:13 -05:00
Quincey Koziol
a28e8407cf [svn-r16093] Description:
Initial changes to allow data blocks to be paged in, instead of loaded
completely.

	Also, refactored test code to be smaller and more maintainable.

Tested on:
        Mac OS X/32 10.5.5 (amazon) in debug mode
        Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
2008-11-17 19:05:45 -05:00
Quincey Koziol
4a219c18b6 [svn-r16091] Description:
Switch H5Gcreate -> H5Gcreate2 and H5Gopen -> H5Gopen2, so that they aren't
switched with the API compability flags are changed

Tested on:
    Mac OS X/32 10.5.5 (amazon)
    Linux/64 2.4 (smirom) w/API compability
2008-11-17 17:23:54 -05:00
Scott Wegner
6b43203d7f [svn-r16085] Purpose: Add new source file to Windows projects
Description:
Recently a new source file, H5Pdapl.c, was introduced.  This checkin adds the file to our Windows projects.

Tested:
VS2005 on WinXP
2008-11-17 14:13:00 -05:00
Scott Wegner
b3b538cf58 [svn-r16084] Purpose: Update Windows tool test scripts
Description: Bring changes from the various tool test scripts to Windows.

testh5copy.bat: add syntax for tests which expect h5diff to fail, and apply them to existing tests
testh5diff.bat: add a new test for "contents mode"
testh5dump.bat: modify some tests to use the new "-b *" and "-b NATIVE" syntax
h5repack.bat: call h5dump without the -c switch

Tested:
VS2005 on WinXP
2008-11-17 14:12:14 -05:00
Neil Fortner
e86e9f49f6 [svn-r16082] Purpose: Fix a problem in the file unmounting code
Description: Fixes a problem in H5F_close_mounts where it wouldn't correctly
reshape the "child" array when unmounting files.  Test added for this case.
Also fixed a potential bug in H5F_unmount where that routine reshapes the child
array.

Tested: kagiso linew smirom (h5committest)
2008-11-17 13:48:37 -05:00
HDF Tester
2d445f880d [svn-r16078] Snapshot version 1.9 release 23 2008-11-16 06:04:24 -05:00
Neil Fortner
fc65a0e676 [svn-r16063] Purpose: Update RELEASE.txt for changes in revision 16062 2008-11-12 13:11:22 -05:00
Neil Fortner
fd2285f7bc [svn-r16062] Purpose: Allow per-dataset rdcc configuration
Description: Adds 3 new public functions: H5Pset_chunk_cache,
H5Pget_chunk_cache, and H5Dget_access_list.  First implementation of dataset
access properties.  See RFC_chunk_cache_functions for details.

Tested: kagiso, linew, smirom (h5committest)
2008-11-12 13:07:51 -05:00
Quincey Koziol
164a8426ea [svn-r16061] Description:
Store extra information about each block in the metadata for the block,
in the hope that a corrupted file will be easier to recover.  (Similar to the
information stored for fractal heaps)

Tested on:
        Mac OS X/32 10.5.5 (amazon) in debug mode
        Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
2008-11-11 18:30:37 -05:00
Quincey Koziol
05e559c9ec [svn-r16060] Description:
Remove unused field from direct block struct.

Tested on:
        Mac OS X/32 10.5.5 (amazon) in debug mode
        Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
2008-11-11 18:29:04 -05:00
Quincey Koziol
e50725342b [svn-r16059] Description:
Add more regression tests for extensible array data structure

Tested on:
        Mac OS X/32 10.5.5 (amazon) in debug mode
        Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
2008-11-11 16:11:55 -05:00
HDF Tester
25c18830ce [svn-r16044] Snapshot version 1.9 release 22 2008-11-09 06:20:52 -05:00
Quincey Koziol
68501dba5c [svn-r16042] Description:
Add random iteration to extensible array tests

Tested on:
        Mac OS X/32 10.5.5 (amazon) in debug mode
        Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
2008-11-06 22:30:46 -05:00
Quincey Koziol
ad751bdce8 [svn-r16041] Description:
Minor cleanups of new testing code.

Tested on:
        Mac OS X/32 10.5.5 (amazon) in debug mode
        Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
2008-11-06 21:57:17 -05:00
Quincey Koziol
9fe6b65c9f [svn-r16040] Description:
More tests for extensible arrays.

Tested on:
        Mac OS X/32 10.5.5 (amazon) in debug mode
        Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
2008-11-06 21:17:30 -05:00
Neil Fortner
e78909e539 [svn-r16036] Purpose: add H5Iis_valid function
Description: H5Iis_valid function added.  This function checks if the id is
valid (i.e. it is currently registered and visible to the application), and
returns TRUE if it is valid, or FALSE otherwise.  It should never return an
error.

Tested: kagiso, linew, smirom (h5committest)
2008-11-05 14:07:40 -05:00
Pedro Vicente Nunes
2eefe0be2e [svn-r16030] updated some comments regarding a function change regarding h5diff return value (not done for 1.8)
* Pedro Vicente, pvn@hdfgroup.org, Nov 4, 2008
 *    Compare the graph and make h5diff return 1 for difference if
 * 1) the number of objects in file1 is not the same as in file2
 * 2) the graph does not match, i.e same names (absolute path)
 * 3) objects with the same name are not of the same type
2008-11-04 16:11:45 -05:00
Pedro Vicente Nunes
8a0b098fdb [svn-r16024] For scalar string datasets print the character position when a difference is found instead of a non-existing array position
Tested: windows
2008-11-03 21:44:40 -05:00
Neil Fortner
c350c300c4 [svn-r16020] Purpose: Fix behaviour of H5Ovisit
Description: H5Ovisit and H5Ovisit by name will now check for a positive return
value from the first callback.  Test added for this case.

Tested: kagiso
2008-11-03 15:53:25 -05:00
HDF Tester
cbd9d87f75 [svn-r16018] Snapshot version 1.9 release 21 2008-11-02 06:54:52 -05:00
Pedro Vicente Nunes
c2a65d0a2b [svn-r16012] Bug fix
When -b was requested and no -o (file name) binary output was made to stdout
Had a check after command line parsing to verify if -o is present, otherwise exit

Tested: windows, linux
2008-10-31 13:22:19 -05:00
Raymond Lu
528a7dd3b8 [svn-r16006] Modify the commit of r15943 for H5_USE_16_API. Let H5version.h check if H5_USE_16_API_DEFAULT is defined by the configure. Then define H5_USE_16_API and use it throughout.
Tested on kagiso - supposed to be simple.
2008-10-30 15:49:08 -05:00
Pedro Vicente Nunes
7ed42940d3 [svn-r16004] h5import: TEXTFPE (scientific format) was deprecated. Use TEXTFP
+            instead (PVN - 2008/10/30)
2008-10-30 14:39:34 -05:00
Pedro Vicente Nunes
2500eb54e3 [svn-r16001] h5diff: return 1 for file differences when both file graphs differ by any object.
+            Error return code was changed to 2 from -1. (PVN - 2008/10/30)
2008-10-30 14:29:23 -05:00
Pedro Vicente Nunes
fc2f0aac41 [svn-r16000] h5dump: binary output defaults to NATIVE 2008-10-30 14:24:03 -05:00
Pedro Vicente Nunes
4cf750810e [svn-r15997] Merge from 1.8
Added a definition of HDftruncate for windows to compile with VC6 and later versions

Tested: windows
2008-10-30 11:16:42 -05:00
Pedro Vicente Nunes
0b56bcc1f3 [svn-r15993]
Merge with 1.8 rev 15985
reorganized the code to deal with deprecated -i -o for in/out files to avoid duplicated code
Tested: linux
2008-10-29 15:19:22 -05:00
Pedro Vicente Nunes
4c08397e79 [svn-r15992] Merge with 1.8 rev 15973
make -b accept both MEMORY and NATIVE
Tested: linux
2008-10-29 15:14:51 -05:00
Pedro Vicente Nunes
8f00f520ff [svn-r15991] Merge with 1.8 rev 15969
Introduced a new feature in the tools library regarding command line parsing
In the definition of arguments, an "*" means that the switch can or can not have an optional argument. This "*" is put in the code regarding the letter definition, and it is transparent to the user (e.g b* instead of the previous b: ), where ":" notes a required argument after the letter (and no ":" or "*" notes no argument, mandatory)
Used for the h5dump binary option -b
It can be now
1)	-b (defaults to NATIVE)
2)	- b NATIVE
3)	- b FILE
4)	-b LE
5)	-b BE
Note: the keyword NATIVE replaces MEMORY
This feature (-b with no argument) was tested with the sequence of h5dump to binary (NATIVE) then h5import to generate an HDF5 file from the binary file and h5diff to compare the 2 HDF5 files
Tested: linux
2008-10-29 15:11:51 -05:00
Pedro Vicente Nunes
61af8db951 [svn-r15990] Merge with 1.8 rev 15967
regarding the return value of h5diff (0, no difference in files, 1 difference )
    objects with the same name must be of the same type
tested: linux
2008-10-29 15:01:38 -05:00
Pedro Vicente Nunes
840c6e34d3 [svn-r15989] Merge with 1.8 up to rev 15945
Regarding use of unsigned long long print format

Tested: linux
2008-10-29 14:56:24 -05:00
Pedro Vicente Nunes
13294e2042 [svn-r15988] Merge with 1.8 up to rev 15871
Regarding h5diff, h5copy

Tested: linux
2008-10-29 14:47:50 -05:00
Pedro Vicente Nunes
e636e152ea [svn-r15987] Merge with 1.8 rev 15871
Eliminate -c option and make that behavior the default and return 2 instead of -1 on error status

tested: linux
2008-10-29 14:29:25 -05:00
Quincey Koziol
cea8049404 [svn-r15983] Description:
Remove redundant check for 1.6 default API.

Tested on:
    Eyeballed - very trivial
2008-10-28 18:43:50 -05:00
Pedro Vicente Nunes
ace46106f3 [svn-r15979] some test files from rev 15866 from 1.8 branch
tested: linux
2008-10-28 14:53:24 -05:00
Pedro Vicente Nunes
3eb56dc9ab [svn-r15978] remove h5diff -c mention and add long double mention 2008-10-28 14:37:03 -05:00
Pedro Vicente Nunes
b7dc9a06b3 [svn-r15977] merge rev 15866 from 1.8 branch into trunk (diffs for unsigned long long)
tested: windows, linux
2008-10-28 14:13:42 -05:00
Raymond Lu
ab2de0d63c [svn-r15968] Correct some minor syntax errors in the checkin #15943.
Tested with h5committest.
2008-10-27 12:10:28 -05:00
Scott Wegner
cea73f9ff9 [svn-r15965] Purpose: Mention Windows bugfix in release document
Description:
In June, we discovered a bug in Windows which only affected specific timezones with the mtime test.  This bug was promptly fixed, but never documented.  This checkin adds a note to the release document.
2008-10-27 10:01:12 -05:00
Binh-Minh Ribler
8e7e1f1119 [svn-r15961] Description:
Fixed some typos and replaced free/HDfree and malloc/HDmalloc.

Platforms tested:
    Linux 2.6 (kagiso)
    SunOS 5.10 (linew)
2008-10-27 07:59:12 -05:00
Binh-Minh Ribler
3677f54877 [svn-r15959] Description:
Added missing wrappers for H5Rdereference.
    Also, for these wrappers, improved exception handlings to report specific
        overloaded functions, where failure occurs.  Will do the same for more
        functions later...

Platforms tested:
    Linux 2.6 (kagiso)
    SunOS 5.10 (linew)
    FreeBSD (duty)
2008-10-26 21:30:06 -05:00
Christian Chilan
ff3481d957 [svn-r15957] Revised the help page of h5perf.
Tested on kagiso.
2008-10-26 16:20:30 -05:00
HDF Tester
d5913fd08f [svn-r15953] Snapshot version 1.9 release 20 2008-10-26 06:00:24 -05:00
Albert Cheng
9ec51ea115 [svn-r15952] Fix Bug 1300.
Removed duplicated information due to previous incompleted changes.
Also rearranged the entries to a more logical combinations.

Tested: h5committest.
2008-10-25 20:47:53 -05:00