Change h5ls not to manipulate special characters in object name or attribute name for smart display.
Description:
Related to "But1784 h5ls has input and output issues with links that have '\' characters in them."
Tested:
jam, amani and linew
Cleaned up the code a bit by:
1. It used to that -xxx options must be at the beginning such that
"buildhdf5 --disable-shared -config" was an error. Now -xxx options
can appear anywhere in the command options.
2. Eliminate the need of variables $CONFIG_CXX, $CONFIG_FORTRAN,
$CONFIG_PARALLEL by appending their values to $CONFIG_OP directly.
3. Also append $WITH_SZLIB to $CONFIG_OP when it is defined, not later.
4. Call CONFIG directly instead of setting up $CONFIGURE.
5. Removed the last TIMESTAMP since "trap 0" will call QUIT which calls
TIMESTAMP already. This eliminated the extra timestamp when it finishes
normal.
tested:
Tested by hand since h5committest does not really test this command.
Minor code cleanup
Description:
Add missing declaration of H5AC_ignore_tags()
to H5ACprivate.h
Clean up some warnings in cache_tagging.c
test file
Tested:
jam, gandalf
Remove unused 'ATYPE' parameter from H5T_CONV() macro
Remove unused 'result' variable from H5AC_set()
Tested on:
Mac OS X/32 10.6.4 (amazon) w/debug & production
(too minor to require h5committest)
Clean up code.
Description:
Reorganize to remove mixed declarations and
code (which should satisfy windows compile).
Tested:
jam, blue print, gandalf
Windows 7 w/ VS Express 2008 (on VMware)
Fix some tagging issues.
Description:
- changed H5Gcreate to H5Gcreate2 in the cache_tagging.c
test file to work properly with 1.6 API default
mapping turned on.
- Added FUNC_ENTER/LEAVE_*TAG macros to the
H5G_stab_valid function.
Tested:
gandalf, jam, amani (w/ production mode, 1.6 API mapping)
Description:
Previously, the chunk cache would, when looking for a chunk, alwaylook for the
chunk in the b-tree before checking the cache. Reworked the functions that
look up chunks to always check the cache first and avoid the b-tree lookup if
the chunk is in cache.
Tested: jam, linew, amani (h5committest)
Commit metadata tagging framework.
Description:
This check-in contains a new framework whose goal is to apply
a tag value to each new entry in the metadata cache as it is created.
This tag value is such that it relates each piece of metadata to the
HDF5 object that it belongs to (dataset, group, et cetera).
This changeset includes the framework that applies the tags as
well as a suite of tests to verify correct tag application, though does
not yet make use of the tag values to flush/evict individual objects.
Please refer to the "flush/evict individual objects" RFC for further
discussion of these changes.
Tested:
jam, amani, linew (h5committest)
liberty, abe, blue print
PHDF5 changed to use "mpiexec", instead of mpirun, as the default MPI
applications startup command as defined in the MPI-2 definition, section
4.1. Note that only mpich related (using mpicc command) definitions are
changed to mpiexec. Other favors like hcc, AIX, champion, are not changed
since I don't have a way to verify them yet.
Tested:
jam and amani, using both current and new mpich.
Did not h5committested since this affects PHDF5 configure only.
Problem: some launching command like yod (and sometimes mpirun), do not pass
back the exit code of the executables back to the shell. It always returns 0
if it can launch the executable. This cause tests that expect non-zero exit
code to fail incorrectly.
Short term Solution:
Added the feature that if $RUNSERIAL_NOEXITCODE is defined, do not
test conditions that rely on non-zero exit code.
Tests:
dove-linux using RUNSERIAL=thgyod to see the failures and using
$RUNSERIAL_NOEXITCODE=yes to bypass the errors.
Also h5committested.
Fixed exit code (sometimes return code in Main) to follow the HDF5 standards.
Tested:
Tested in Dove-linux only since change is trivial and has passed in v1.8.
This also affected the use of the #include <winsock.h> needed by gethostname. The new include: winsock2.h has been added to h5private.h and either removed or updated in the other files.
Tested: Windows
Fixed Windows compile error. Renamed to use 'gid1' and 'gid2' instead of 'grp1' and 'grp2'.
Description:
There is variable name confliction with 'grp1' ~ 'grp9' in Windows system. It occurs if H5private.h is included in the code.
Support follow symbolic links.
Description:
Add '--follow-symlinks' option to follow symbolic links (soft and external).
Update help page according to RM.
Remove some warning messages from compiler.
Tested:
jam, amani and linew
Added ibm-flags to display the IBM XL compilers version information so that configure
can report them in the configure summary and the libhdf5.settings file.
For now, only the C compiler (xlc) versions are displayed.
Also moved the C compiler options setting from ibm-aix to ibm-flags.
Tested: NCSA Blue-print, both 32 and 64 bit modes.
Bring r18911 (plus some adaptions to match the code on the trunk)
from the metadata journaling "merging" branch to the trunk:
More general changes to align trunk with eventual changes from
metadata journaling branch.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
fill values.
Description:
Previously, H5D_chunk_allocate would, if a dataset were filtered and had a non-default VL fill value, allocate a new buffer for every chunk. Changed
H5D_chunk_allocate to reuse the existing buffer if possible. Also other
miscellaneous cleanup.
Tested: jam, linew, amani (h5committest)
- Add an install rule to copy compiled fortran module files
- Only build the xlatefile utility if testing and tools are enabled
- Don't do MPI HAVE_XXX checks until MPI_FOUND is true
- Install needs H5version.h & H5overflow.h to be copied
- Add debug information flags to debug compile and link lines for win32 Intel compiler
