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136 Commits

Author SHA1 Message Date
Larry Knox
8008294578 Squashed commit of the following: 
Merge changes from update_merged_S3_HDFS branch into develop.

commit d5034315aea88629929ac0c9c59ebfafd5f21a31
Merge: 9c48823 d3fdcd8
Author: Larry Knox <lrknox@hdfgroup.org>
Date:   Thu Jul 25 08:24:53 2019 -0500

    Merge branch 'develop' into update_merged_S3_HDFS
 2019-07-25 11:47:12 -05:00
Allen Byrne
7174b5c135 HDFFV-8631 mingw is different platform 2019-07-17 11:58:02 -05:00
Quincey Koziol
3b594992d6 Add support for GCC9, update warnhist script, and clean up warnings. 2019-07-02 23:43:45 -05:00
Allen Byrne
e7f16c6f2c HDFFV-10805 Add option to only build shared targets 
HDFFV-10805 Add ONLY_SHARED_LIBS option and prefer shared over static
HDFFV-10803 Update FindSZIP.cmake find module
Remove unneeded modules and update java modules
 2019-06-18 07:46:25 -05:00
Allen Byrne
e2eaac9338 ESE-97 add vol_plugin test to CMake builds 2019-04-25 10:44:06 -05:00
Allen Byrne
cc5f91d1d2 Fix CMake errors 2019-04-18 11:35:11 -05:00
Songyu Lu
c0e05f0747 Forgot to add external_common.c and external_common.h. 2019-04-10 16:48:42 -05:00
Songyu Lu
417cd9da87 Updated CMake for the splitting of external.c and vds.c. 2019-04-10 16:02:28 -05:00
Jerome Soumagne
dc69df49e6 CMake: fix pthread linking to only be private 2019-03-13 13:54:35 -05:00
Jerome Soumagne
bcf5c400c0 Fix CMake H5_HAVE_THREADSAFE to set value in H5pubconf.h 
Add REQUIRED to find_package(Threads)

Link against thread library if static and not WIN32 platform
 2019-02-21 16:39:37 -06:00
Allen Byrne
122b63a5a2 HDFFV-10703 Update CMake commands to latest standard 2019-02-15 15:48:24 -06:00
Vailin Choi
d3dff6efe6 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into develop 
Resolve conflicts:
Conflicts:
	test/Makefile.am
 2019-01-02 13:23:54 -06:00
Vailin Choi
f808c108ed Fix for HDFFV-10659: The library abort with "infinite loop closing library" 
after deleting attributes in densed storage.
The fix: When deleting attribute nodes from the name index v2 B-tree,
if an attribute is found in the intermediate B-tree nodes, which may be
merged/redistributed in the process, we need to free the dynamically
allocated spaces for the intermediate decoded attribute.
 2018-12-28 16:49:11 -06:00
Dana Robinson
fafee5b8ae Fixed a CMake build issue (CMake still doesn't run the VOL plugin 
tests)
 2018-12-27 19:56:21 -08:00
Allen Byrne
79903575e6 HDFFV-10605 Only test plugins if SHARED enabled 2018-11-06 15:45:58 -06:00
Dana Robinson
e962df1591 VOL FEATURE 2018-10-10 08:10:15 -07:00
Allen Byrne
8d7bdb7041 CMake changes for SKIPPED and flush tests 2018-09-24 14:38:46 -05:00
Allen Byrne
f5b0b1c607 Fix usage of compression lib in shared tests 2018-06-01 10:09:53 -05:00
Dana Robinson
dec2f588ac Merge pull request #1043 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:h5do_direct_chunk_hl_to_src to develop 
* commit '1da9c5545c013ebc540ba3044810889d4acfa5be':
  Restored some unused #defines to the deprecated section of H5Dpublic.h.
  Added deprecated symbol wrappers for the H5DOwrite/read_chunk wrappers.
  Updated commenting in the H5DO compat test.
  Stripped out most of the duplicated functionality in the H5DO compat test.
  * Added H5DO compatibility functions. * Changed the offset copy to use an array on the stack. * Yanked some unused #defines.
  * Fixed the error tests * Moved common functionality into helper functions
  Normalize with trunk prior to update merge
  Fixed a warning.
  Finished move of H5DOread/write_chunk calls to H5D.
  First stage of moving H5DOread/write_chunk() to src/ and making them H5D calls. * Moved H5DOread/write_chunk() to H5Dio.c and renamed to H5D*. * Moved the hl/test/test_dset_opt test to test/ and renamed to   direct_chunk. * Moved the hl/test/dectris_hl_perf test to tools/test/perform   and renamed to direct_write_perf. * Updated autotools and CMake files.
 2018-05-31 18:14:24 -05:00
Dana Robinson
0e584c7af2 Merge branch 'develop' into h5do_direct_chunk_hl_to_src 2018-05-14 17:45:23 -07:00
Allen Byrne
37c27afde0 Fix MPI on Windows by adding MPI include folder 2018-05-09 14:29:44 -05:00
Allen Byrne
f1a668a3b5 Correct COMPILE defs usage 2018-05-09 08:53:25 -05:00
Dana Robinson
64e13ca220 Merge branch 'develop' into h5do_direct_chunk_hl_to_src 2018-04-30 15:22:09 -07:00
Dana Robinson
09b1106e39 First stage of moving H5DOread/write_chunk() to src/ and making 
them H5D calls.
* Moved H5DOread/write_chunk() to H5Dio.c and renamed to H5D*.
* Moved the hl/test/test_dset_opt test to test/ and renamed to
  direct_chunk.
* Moved the hl/test/dectris_hl_perf test to tools/test/perform
  and renamed to direct_write_perf.
* Updated autotools and CMake files.
 2018-04-30 07:52:07 -07:00
Allen Byrne
2347bffaa2 TRILABS-19 remove add_defintions and use generator expressions 2018-04-26 16:41:04 -05:00
Allen Byrne
6c82c49dd5 TRILABS-20 set a compiler name on all project commands 2018-04-20 10:11:55 -05:00
Allen Byrne
46f2a2a432 TRILABS-19 Initial conversion of include_directories to targets 2018-04-17 15:57:58 -05:00
Allen Byrne
db3d744f25 HDFFV-10444 fix soversion numbers for libraries 2018-04-10 08:55:17 -05:00
Allen Byrne
24c62ba7fe Change CMake min to 3.10 2018-03-09 12:32:06 -06:00
Allen Byrne
93744615f9 Fix list var 2018-02-27 14:04:34 -06:00
Allen Byrne
90f01d5b16 Fix IN_LIST usage 2018-02-27 13:33:38 -06:00
Allen Byrne
b36bad53d9 Inc CMake min, Add new tests, rework test CMake files 2018-02-27 12:57:07 -06:00
Allen Byrne
6ca95c512a HDFFV-10385 rework java names 2018-01-17 10:27:00 -06:00
Allen Byrne
bd34c9e455 HDFFV-9724 Corrected files and verified tests 2017-12-28 16:49:50 -06:00
Allen Byrne
732074d47e Add library INTERFACE and MPI to tools 2017-12-28 16:30:51 -06:00
Allen Byrne
637a8f7562 Correct linkage of filters and other libs 2017-11-16 09:04:51 -06:00
Dana Robinson
00ade113c5 Plugin test rework 
Cleanup of plugin test code. Renames many files. Prep for VOL branch merge.
 2017-11-08 17:52:44 -08:00
Vailin Choi
804a88fafd Fix for HDFFV-10160 
Modifications to fix the assertion/abort failure when the application does not close the file.
 2017-06-29 01:11:44 -05:00
Quincey Koziol
0313cbb91d Final merge of page buffering branch to develop 2017-03-13 21:30:37 -07:00
Allen Byrne
2562ec3a4b Update CMake files and formatting 2017-03-01 14:47:53 -06:00
Allen Byrne
cae5e0ad07 cmake non-code typo 2017-03-01 09:58:59 -06:00
Allen Byrne
c699bbc8bf HDFFV-10125 cache_common file already in test lib 2017-02-02 16:30:23 -06:00
Quincey Koziol
a9808853d5 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into develop_merge_cache_image_06 2017-01-28 23:27:08 -08:00
Quincey Koziol
1949d5756d Cache image feature and testing 2017-01-28 23:19:37 -08:00
Dana Robinson
2cac1c0637 Moved remaining SWMR-related test files to develop. 2017-01-26 14:34:12 -05:00
Allen Byrne
e1bcae8a6a Update cmake min version and cmake command convention 2017-01-10 17:10:03 -06:00
Dana Robinson
e41a15b7f0 Added a missing test file needed for the flushrefresh script. 2016-12-30 10:06:07 -05:00
Quincey Koziol
eefddf2813 Bring new/updated tests from revise+chunks branch: flush1/flush2 update and 
flushrefresh test.  (Also refactor of message send / wait code)
 2016-12-19 20:44:54 -08:00
Quincey Koziol
104253575d Update CMake configuration files with SWMR accumulator changes. 2016-12-18 00:58:46 -08:00
Quincey Koziol
64a339183f Bring SWMR support in to the main development branch. (Finally!) More tests 
and the tool and API wrappers will be coming in over the weekend.
 2016-12-02 08:07:04 -08:00