Commit Graph

1378 Commits

Author SHA1 Message Date
Scot Breitenfeld
985e8d02a4 [svn-r27327] svn merge -r27208:27326 https://svn.hdfgroup.uiuc.edu/hdf5/trunk 2015-07-02 14:12:03 -05:00
Scot Breitenfeld
2a567e8155 [svn-r27326] Working version of cmake on linux. 2015-07-02 14:04:25 -05:00
Quincey Koziol
8e94745298 [svn-r27293] Description:
Split parallel metadata cache code into separate source code modules.

Tested on:
    MacOSX/64 10.10.3 (amazon) w/serial & parallel
    (too minor for h5committest)
2015-06-27 11:45:21 -05:00
Larry Knox
5dac57c5c4 [svn-r27280] Add temporary file to create tarballs for buildbot (and possibly all) daily testing. When the behavior is acceptable, the changes should be merged into the regular release script as a --revision option. 2015-06-24 16:45:32 -05:00
Elena Pourmal
1e7ab81ff2 [svn-r27248] Daily tests in the VDS brnach reported missing file in MANIFEST. Fixed. 2015-06-19 07:37:58 -05:00
Allen Byrne
202fd2b6c1 [svn-r27235] Add vds h5diff tests 2015-06-17 15:22:25 -05:00
Dana Robinson
fb27787c2a [svn-r27222] Merge of r27035-27221 from the trunk.
Tested on 64-bit linux VM:
    Serial: C++ and Fortran 2003
    Parallel: Fortran
2015-06-17 06:48:34 -05:00
Allen Byrne
3d5c3851a3 [svn-r27218] Add VDS tests to h5ls 2015-06-16 16:15:55 -05:00
Scot Breitenfeld
48086667b5 [svn-r27209] svn merge -r27186:27208 https://svn.hdfgroup.uiuc.edu/hdf5/trunk 2015-06-16 08:49:28 -05:00
Allen Byrne
b5a6740703 [svn-r27202] Except one file is used by other tests! 2015-06-15 08:10:14 -05:00
Allen Byrne
83208611cb [svn-r27201] Changed location of packed bits testfiles 2015-06-15 07:59:14 -05:00
Allen Byrne
78e128c544 [svn-r27195] Add h5dump cmake tests and files.
Add tools gen cmake files
move testfiles for pbits to subdir as well as vds

Tested: local linux
2015-06-12 16:29:20 -05:00
Dana Robinson
aa4e3e3985 [svn-r27191] Merged r26781 to r27185 from trunk
Tested on: 64-bit Ubuntu Linux VM w/ gcc 4.8.2
    (C++ and Fortran 2003 also tested)
2015-06-11 14:18:52 -05:00
Scot Breitenfeld
6c4e3759f5 [svn-r27187] svn merge -r27135:27186 https://svn.hdfgroup.uiuc.edu/hdf5/trunk 2015-06-10 14:23:09 -05:00
Dana Robinson
349ad0d74d [svn-r27166] Updated MANIFEST to include test/vds.c and tools/misc/vds files. 2015-06-08 22:22:43 -05:00
Scot Breitenfeld
32703c9fc5 [svn-r27164] various bug fixes for DT 2015-06-08 16:13:15 -05:00
Mohamad Chaarawi
bf3b382df7 [svn-r27163] update manifest for newly added file. 2015-06-08 16:10:14 -05:00
Scot Breitenfeld
f486fe1a49 [svn-r27137] svn merge -r27115:27135 https://svn.hdfgroup.uiuc.edu/hdf5/trunk 2015-06-02 09:46:51 -05:00
Scot Breitenfeld
2069dbf25e [svn-r27134] Switched to uses a verify for each kind for the tests. Testing quad precision. 2015-06-01 14:49:54 -05:00
Scot Breitenfeld
b1cf507c6d [svn-r27116] svn merge -r26937:27115 https://svn.hdfgroup.uiuc.edu/hdf5/trunk 2015-05-27 17:12:43 -05:00
Neil Fortner
948722cde8 [svn-r27103] Merge revisions 26780 through 27102 from trunk to vds branch.
Tested: ummon
2015-05-21 12:13:16 -05:00
Allen Byrne
37a07df7b4 [svn-r27064] HDFFV-9327: Refactor compiler flags to config file.
Tested: local linux
2015-05-14 11:51:20 -05:00
Dana Robinson
984ecb72c2 [svn-r27038] Merge of r26393-27031 from the trunk.
Tested on 64-bit linux VM w/ C++ and Fortran 2003
2015-05-07 16:05:14 -05:00
Elena Pourmal
bc6873d3bd [svn-r27025] Enabled compilation and run for the new vds examples for "make installcheck"; added to MANIFET. 2015-05-05 16:35:10 -05:00
Scot Breitenfeld
35a297b461 [svn-r26911] svn merge -r26866:26910 https://svn.hdfgroup.uiuc.edu/hdf5/trunk 2015-04-23 15:21:04 -05:00
Allen Byrne
dcb31a0e00 [svn-r26906] Correct typo 2015-04-23 14:05:22 -05:00
Allen Byrne
0137743470 [svn-r26905] Add user scripts to CMake folder 2015-04-23 13:50:49 -05:00
Scot Breitenfeld
05a320e9eb [svn-r26897] Added DLL file for HL Fortran. 2015-04-23 09:46:21 -05:00
Scot Breitenfeld
0a5ca8ad05 [svn-r26885] Fixed issues with CMake and Fortran on linux. 2015-04-22 13:50:29 -05:00
Scot Breitenfeld
c7529c3d83 [svn-r26873] Added BIND(C) and moved to .F90 extension. 2015-04-21 14:53:56 -05:00
Scot Breitenfeld
6813b25007 [svn-r26866] Removed the default REAL and DOUBLE PRECESION dependency. 2015-04-21 11:53:40 -05:00
Scot Breitenfeld
5fd5aa58ca [svn-r26847] combined H5test_kind programs 2015-04-20 14:15:30 -05:00
Scot Breitenfeld
bd0aaf89e2 [svn-r26827] Combined parallel APIs and removed no longer needed parallel files. 2015-04-16 15:52:07 -05:00
Scot Breitenfeld
0cc9b0c79f [svn-r26825] Added include for preprocessing fortran files with configure definitions 2015-04-16 13:36:34 -05:00
Scot Breitenfeld
7984de553e [svn-r26819] Updated H5A, H5E, H5D, H5F APIs to F2003, added ifdef for parallel. 2015-04-15 17:03:33 -05:00
Scot Breitenfeld
d7fbbda1a0 [svn-r26809] Changed Fortran file endings from ".f90" to ".F90" 2015-04-14 16:59:58 -05:00
Scot Breitenfeld
74e0d6d697 [svn-r26807] Combined *_F03* files and removed *_F90* files. 2015-04-14 15:46:59 -05:00
Neil Fortner
6a27582a44 [svn-r26781] Merge revisions 26305 through 26780 from trunk to vds branch.
Tested: ummon
2015-04-10 18:00:48 -05:00
Albert Cheng
dd32c639c6 [svn-r26751] Updated. 2015-04-07 13:13:57 -05:00
Albert Cheng
5cc53e3ba2 [svn-r26750] HDFFV-8667: h5repack crashes on enumerated 8-bit type nested in compound type.
Added the testing to h5repack where it belongs.
Undo the tests added to h5dump.

Tested: h5committested plus tested in jam by hand.
2015-04-07 13:10:21 -05:00
Albert Cheng
cf11eef385 [svn-r26677] HDFFV-8957: h52gif crashes when run against one of our own examples
The tool claimed it could handle 24bit images but there was no code to handle it.
(or might be there were but was removed by previous revisions.)
Also discovered that it does not accept multiple images nor -p for palette
as its user document and online help message indicated.

Solution: 
Added code to verify dimension sizes are within 8 bit raster images limit and
added tests to verify the tools correctness.
Need to update user document tool.

Tested: h5committested.
2015-03-31 14:13:34 -05:00
Albert Cheng
56fe37c8e6 [svn-r26646] Bug fix: HDFFV-8957 h52gif crashes when run against one of our own examples.
Description: h52gif crashed when it was asked to convert a 24bitimage.
Upon viewing the code, it did not prepare to handle images other than 2 dimensions.
It has no concept of multiple planes images.  Further examinations showed past attempts
to fix it ended up removed some abilities (-p or multiple planes, animation, ...) have
been removed but documentation was not updated. Even its online help message still
shows -p is an option.

Solution: added protection code to flag errors if input request is not an
8bit image within size limits.  (I don't have enough knowledge of the GIF
format to fix this tool. All I did was plugging known bug from crashing the
program.)

Tested: h5committest.
2015-03-30 00:28:13 -05:00
Scot Breitenfeld
8e5a71c716 [svn-r26642] Fix for HDFFV09202 and HDFFV-9171.
HDFFV-9171 Configure mistakes Cray Compilers for Intel Compilers,
HDFFV-9202 subroutine VERIFY() fails when checking 8 byte integers in fortran tests 

Tested: h5committest
2015-03-28 15:24:36 -05:00
Scot Breitenfeld
ff1c86df14 [svn-r26631] reverted change r26629 2015-03-27 17:16:49 -05:00
Scot Breitenfeld
d494d7b3b9 [svn-r26629] Fix for HDFFV09202 and HDFFV-9171.
HDFFV-9171 Configure mistakes Cray Compilers for Intel Compilers,
HDFFV-9202 subroutine VERIFY() fails when checking 8 byte integers in fortran tests 

Tested: h5committest
2015-03-27 17:10:24 -05:00
Quincey Koziol
39373fbabb [svn-r26605] Description:
Bring r26503 & r26528 from autotools_rework branch back to the trunk:

    Remove old platform configure files: craynv, dec-flags, hpux11.23,
ia64-linux-gnu, nec-superux14.1, sv1-cray, x86_64-redstorm-linux-gnu

   Also remove CONVERT_DENORMAL_FLOAT, since this was only set in the
configure files being removed.

Tested on:
    Linux/32 2.6.18 (jam) w/serial & parallel
    (Daily tested on branch for 2+ days)
2015-03-26 13:34:11 -05:00
Elena Pourmal
1df431a1f4 [svn-r26563] Added new percival example to MANFEST. 2015-03-24 17:44:43 -05:00
Quincey Koziol
7bfec19a02 [svn-r26528] Description:
Remove configure files.
2015-03-23 11:18:48 -05:00
Jerome Soumagne
8a1d1b24cf [svn-r26505] Merge r26435 from autotools_rework branch.
Remove DEFAULT_LIBS from configure.ac and irix6.x config file which
was using it.

Remove references to IRIX/irix* platform.
2015-03-20 14:04:30 -05:00
Jerome Soumagne
9379314551 [svn-r26435] Remove DEFAULT_LIBS from configure.ac and irix6.x config file which
was using it.

Remove references to IRIX/irix* platform.
2015-03-11 15:15:25 -05:00
Elena Pourmal
ca2a0b80c5 [svn-r26420] Added new example for simple I/O. Modified other examples according to the suggestion in H5VDS-7 (see VDS-178) 2015-03-10 17:15:20 -05:00
Dana Robinson
ce19753d87 [svn-r26396] Merge of r26349-26392 from the trunk.
Tested on: h5committest
2015-03-09 03:47:16 -05:00
Elena Pourmal
802fac804d [svn-r26376] Added new examples for fixed-size Excalibur and for Eiger use cases. Fixed several typos.
Tested on jam.
2015-03-05 18:04:57 -05:00
Allen Byrne
5be5a4d832 [svn-r26365] HDFFV-8520: Add plugin control APIs.
Update windows WiX packaging.

h5committested
2015-03-05 11:09:22 -05:00
Elena Pourmal
3c9c263e5a [svn-r26359] Added h5_vds-exc.c to misc. files and ran bin/reconfigure.
Tested on jam.
2015-03-04 12:26:33 -05:00
Dana Robinson
5b294640c0 [svn-r26350] Merge of r26273-26348 from the trunk.
Tested on: h5committest
2015-03-03 19:27:40 -05:00
Larry Knox
dc059968de [svn-r26332] Removed duplicate linew from MANIFEST
tested with chkmanifest on platypus.
2015-02-28 21:05:19 -05:00
Neil Fortner
2ca5b16a9f [svn-r26296] Merge r26050 through 26295 from trunk to vds branch.
Tested: ummon
2015-02-24 16:53:56 -05:00
Mohamad Chaarawi
0c29ac42cd [svn-r26279] re-commit 26260 that Dana moved out fixing the versioning of functions to work with v16 default API. 2015-02-23 10:14:43 -05:00
Dana Robinson
c07d803659 [svn-r26274] Merge of r26096 to r26271 from trunk.
Tested on: jam - serial: C++/Fortran
                 parallel: Fortran
2015-02-22 07:16:30 -05:00
Dana Robinson
f634105bdb [svn-r26271] Reverse merge of r26260 which was causing daily test failures.
Tested on: jam w/ parallel and fortran
2015-02-22 03:38:18 -05:00
Elena Pourmal
7881deb15e [svn-r26268] Added VDS example.
I ran bin/reconfigure on jam and it modified test/Makefile.in. May be Neil fixed Makefile.am,
but didn't run reconfigure?

Tested on jam.
2015-02-21 22:26:08 -05:00
Dana Robinson
a93751a342 [svn-r26265] Updated MANIFEST file. Deleted VMS and autotools files were removed from
the list.
2015-02-21 12:35:34 -05:00
Mohamad Chaarawi
fcd77ffe7e [svn-r26260] - add an attribute callback to call H5_term_library when MPI_COMM_SELF is destroyed.
- add tests for above.
- this is a fix for HDFFV-883.

tested h5committest
2015-02-20 16:33:48 -05:00
Allen Byrne
42a97ddeff [svn-r26255] Remove file - obsoleted by cmake 3.1 minimum 2015-02-20 14:01:19 -05:00
Dana Robinson
fc082e60f3 [svn-r26236] Updated the MANIFEST file after deleting VMS support files.
Tested on: bin/chkmanifest
2015-02-19 09:39:33 -05:00
Scot Breitenfeld
b28b5fade9 [svn-r26188] Merged autotools fixes into the trunk:
HDFFV-9089, HDFFV-9091, HDFFV-9092, HDFFV-9094, HDFFV-9095
2015-02-16 12:17:49 -05:00
Neil Fortner
14200fef67 [svn-r26153] INCOMPLETE, UNWORKING CODE
Commit progress through 2/10/15 at 1500 CST
2015-02-10 14:58:09 -05:00
Dana Robinson
99c4ec387c [svn-r26145] Removed bin/reconfigure.
The autogen.sh script seems to work in enough places
and for enough people to warrant removing bin/reconfigure.
2015-02-07 02:05:34 -05:00
Dana Robinson
dcd8c9f487 [svn-r26144] Removed bin/genltanalyze from the MANIFEST since that file has
been permanently deleted. I've not removed all the generated
files from the MANIFEST, though, since I'm waiting on a decision
as to whether we leave those in or not.

Tested on: bin/chkmanifest after running autogen.sh
2015-02-07 01:34:24 -05:00
Dana Robinson
a36942f59f [svn-r26099] Updated manifest
Part of: HDFFV-9120
2015-02-02 03:53:59 -05:00
Dana Robinson
0af31e6938 [svn-r26093] Updated manifest. 2015-02-01 14:25:19 -05:00
Scot Breitenfeld
4d34a0c6ad [svn-r26051] Fix for HDFFV-9092
Change AC_TRY_RUN TO AC_TRY_COMPILE

Changed all the instances of AC_TRY_RUN for the Fortran and C++ tests to use
AC_COMPILE_IFELSE and moved all the tests to new files in m4 directory:

aclocal_cxx.m4 (for C++ tests)
aclocal_fc.m4 (for Fortran tests)

tested: jam
2015-01-27 12:17:09 -05:00
Albert Cheng
c803666ec2 [svn-r25940] HDFFV-9046: reorganize hdf5/perform, step 2
Move timing measurement routines used by h5perf and h5perf_serial to tools/lib
so that they can be used by other tools too.

tools/lib/io_timer.c
tools/lib/io_timer.h
tools/perform/io_timer.c
tools/perform/io_timer.h
    renamed perform/io_timer.[ch] to lib/io_timer.[ch]

tools/lib/Makefile.am
tools/lib/Makefile.in
tools/lib/CMakeLists.txt
tools/perform/Makefile.in
tools/perform/Makefile.am
tools/perform/CMakeLists.txt
MANIFEST
    updated due to the move.

Tested; h5committest and jam (serial)
2015-01-01 11:24:55 -05:00
Albert Cheng
f5d2975018 [svn-r25933] updated. 2014-12-30 09:49:02 -05:00
Albert Cheng
aebc4ae149 [svn-r25932] HDFFV-8902: merge the source code of h5perf and h5perf_serial, stage 1.
tools/perform/sio_timer.h:
tools/perform/pio_timer.c:
tools/perform/io_timer.h:
tools/perform/io_timer.c:
    Renamed pio_timer.[ch] as io_timer.[ch];
    merged content of sio_timer.[ch] into io_timer.[ch] so that both h5perf and h5perf_serial
    call the combined io_timer.[ch].
    Moved the debug printing code segment in set_time() in [sp]io_timer.c to as debug_start_stop_time() in [sp]io_perf.c where it belongs.
    Screened out set_timer_type() and get_timer_type() which were not used by any code.

tools/perform/Makefile.am:
tools/perform/Makefile.in:
tools/perform/CMakeLists.txt
    Adjusted to use io_timer.c for both h5perf and h5perf_serial.

tools/perform/pio_perf.c:
tools/perform/sio_perf.c:
tools/perform/pio_perf.h:
tools/perform/sio_perf.h:
    Renamed [sp]io_time_destory() to same io_time_destroy();
    Moved the debug printing code segment in set_time() in [sp]io_timer.c to as debug_start_stop_time() in [sp]io_perf.c where it belongs.

tools/perform/pio_engine.c:
tools/perform/sio_engine.c:
    Removed #include io_timer.h since it was already #include by [sp]io_perf.h.

MANIFEST:
    Updated the merge of [sp]io_timer.[ch] into io_timer.[ch].

Tested: h5committest and jam in extra.
2014-12-30 00:56:05 -05:00
Albert Cheng
9747e63938 [svn-r25913] Updated. 2014-12-19 15:05:23 -05:00
Albert Cheng
d9ba0ae35f [svn-r25900] HDFFV-9046: reorganize hdf5/perform/ directory
Moved perform/ to tools/perform. Updated all the configure related files for the new location.

Tested: h5committested plus tested in jam and kite.
2014-12-17 18:07:24 -05:00
Allen Byrne
73465a6bc2 [svn-r25745] Testfiles for h5dump bitfields and opaques 2014-10-27 16:47:24 -05:00
Allen Byrne
51e9f7091c [svn-r25617] Upgrade packaging process with cmake helper functions.
Tested: local linux
2014-09-25 09:37:09 -05:00
Mohamad Chaarawi
bd66cdd5d6 [svn-r25468] some code refactoring to align trunk with VOL branch.
tested with h5committest.
2014-07-22 14:54:51 -05:00
Allen Byrne
890a76ea64 [svn-r25300] Add flex / bison commands to bin script and regenerate hl files using latest versions.
No other files touched.
Tested: h5committest
2014-06-16 15:12:42 -05:00
Scot Breitenfeld
9cf0844928 [svn-r25290] Fix for:
HDFFV-8653
replace non-standard sizeof in the fortran tests with c_sizeof
2014-06-16 11:38:07 -05:00
Scot Breitenfeld
744bc7d236 [svn-r25286] Fix for:
HDFFV-8653
replace non-standard sizeof in the fortran tests with c_sizeof 

Tested: jam (gnu, intel) with make and cmake.
2014-06-16 10:15:25 -05:00
Allen Byrne
896a5e7992 [svn-r25191] Moved file back to cmake folder 2014-05-14 15:10:42 -05:00
Allen Byrne
21474f8eee [svn-r25188] Implement change to cmake_ext_mod config folder
Tested: local linux
2014-05-14 14:50:28 -05:00
Albert Cheng
3dc1e6dd38 [svn-r25081] Bug HDFFV-8625, HDFFV-8639, HDFFV-8745:
h5diff issues "unable to read attribute" error message when comparing two files

Description:
    h5diff did not handle attributes of variable length strings correctly. It created the wrong memory type if one but not both compared attributes are of the variable strings type. It ended in H5Aread() failure.

Solution:
    We decided to treat the case when one type is variable length string and the other is not as incomparable. That bypassed the above error.  We still need to figure out the proper way, if possible, to compare variable string with non-variable string types.

Tested: h5committested plus tested in Swallow (OS X 10.8).
2014-04-22 17:25:51 -05:00
Binh-Minh Ribler
9eec404f8b [svn-r25025] Description:
Added:
	./c++/src/header_files/hdf_logo.jpg
	./c++/src/header_files/help.jpg
2014-04-11 22:06:19 -05:00
Scot Breitenfeld
d1f2b1a682 [svn-r24985] reverted the r24984 update. 2014-04-07 20:00:24 -05:00
Scot Breitenfeld
ff9a10cfda [svn-r24984] Added overload operatorZ to compare REALs for tests.
Tested on jam (gfortran, (-r8))
2014-04-07 19:18:20 -05:00
Binh-Minh Ribler
607634a69b [svn-r24973] Description:
Added c++/test/tobject.cpp
2014-04-06 22:27:14 -05:00
Elena Pourmal
70daa61a87 [svn-r24967] Maintenance: Reorganized and cleaned the code to remove compiler warnings in the Fortran test code
and examples. 

Platforms tested: Manual testing in place and using srcdir on jam, platypus, and emu with default and 
                  PGI, Intel and new GNU compilers. ifort compiler was also tested with -i8 and -r8 flags
                  on jam.  CMake tested on jam.
2014-04-06 10:56:21 -05:00
Allen Byrne
8faebe2aa8 [svn-r24933] Add file required by automake 2014-03-31 12:55:47 -05:00
Binh-Minh Ribler
82df757e96 [svn-r24926] Description:
Added c++/test/tdspl.cpp
2014-03-30 11:16:04 -05:00
Quincey Koziol
2e4302818a [svn-r24864] Description:
Remove all traces of MPI-POSIX VFD and GPFS detection/code.

    Remove remaining traces of stream VFD.

    Remove testpar/t_posix_compliant test (it's not actually verifying anything).

    Clean up H5D__mpio_opt_possible() further.

    Moved environment variable that disables MPI collective operations into
MPI-IO VFD (instead of it being in src/H5S.c).

    A few other small code cleanups.

Tested on:
    Mac OSX/64 10.9.2 (amazon) w/parallel & serial
2014-03-21 18:02:24 -05:00
Allen Byrne
03d10edd23 [svn-r24824] HDFFV-8700 -
KitWare recommendations: Change CMake commands to lower case.
Bump up CMake minimum versions.
Split test file into separate file for h5repack test.

Tested: local linux
2014-03-18 11:21:46 -05:00
Quincey Koziol
ac0ef34a41 [svn-r24769] Description:
Check in Mohamad's changes to support collective I/O on point selections,
along with some other minor cleanups.

Tested on:
    Mac OSX/64 10.9.2 (amazon) w/parallel & serial
    (h5committest forthcoming)
2014-03-07 14:12:20 -05:00
Allen Byrne
f68f4be233 [svn-r24742] Synchronize Apple bundle packaging with latest changes discovered during hdf-java work. 2014-02-27 11:53:12 -05:00
Mohamad Chaarawi
863ff882b6 [svn-r24709] rename H5V to H5VM since H5V is needed in the fastforward project for
view objects.  The addition of view objects in the fastforward project
is expected to be brough into the trunk sometimes in the future, which
is why we need to make this change.

Tested Manually on Jam and Ostrich.
Tested with h5commitest - Koala with intel compilers failed, but nothing had to do with those changes.
error on Koala: error while loading shared libraries: libirng.so
2014-02-13 17:12:46 -05:00
Allen Byrne
82f62cd012 [svn-r24703] Add Binary README.txt file generation
Tested: local linux cmake
2014-02-13 09:00:00 -05:00
Allen Byrne
4f2f2cf6a2 [svn-r24656] Correct packaging variables and use standard cpack module. Remove file. 2014-01-28 16:30:10 -05:00
Allen Byrne
2f86aa7551 [svn-r24646] HDFFV-8640: Remove xlate_utility by fixing reference files to not add extra lines.
Tested: cmake and autotools local linux
2014-01-27 09:26:21 -05:00
Allen Byrne
3b23b7eb1a [svn-r24487] HDFFV-8629: repack plugin_none test files.
CMake only until library updates approved.
2013-12-03 08:31:05 -05:00
Allen Byrne
624a466600 [svn-r24482] HDFFV-8635: remove test of whole file and just test dsets that have szip compression.
Tested local linux with cmake and autotools
2013-12-02 15:32:22 -05:00
Allen Byrne
a25c08e9e2 [svn-r24472] remove line for file that does not exist 2013-11-27 11:34:03 -05:00
Allen Byrne
2f097704ca [svn-r24471] JAVA-1798: Add the testfiles for hdf-java and the h5dump tests including the test to read filter data.
Tested: cmake and autotools - local linux
2013-11-27 11:01:16 -05:00
Allen Byrne
8190a5e4b3 [svn-r24408] Add compound integer tests files
Tested: local linux cmake
2013-11-06 13:28:12 -05:00
Allen Byrne
819b8099e2 [svn-r24392] Cleanup testfiles from scripts. Update lists of files to be cleaned. CMake update to clean testfiles.
Tested: local cmake, autools, and h5committest
2013-11-01 16:15:37 -05:00
Binh-Minh Ribler
d567424783 [svn-r24175] Description:
Added the tutorial examples
	./c++/examples/h5tutr_cmprss.cpp
	./c++/examples/h5tutr_crtatt.cpp
	./c++/examples/h5tutr_crtdat.cpp
	./c++/examples/h5tutr_crtgrpar.cpp
	./c++/examples/h5tutr_crtgrp.cpp
	./c++/examples/h5tutr_crtgrpd.cpp
	./c++/examples/h5tutr_extend.cpp
	./c++/examples/h5tutr_rdwt.cpp
	./c++/examples/h5tutr_subset.cpp

    Verified with bin/chkmanifest
2013-09-20 08:23:24 -05:00
Allen Byrne
786526fd05 [svn-r24105] Correct filename extension 2013-09-06 10:35:00 -05:00
Allen Byrne
145f1ce9e3 [svn-r24104] HDFFV-8345: add User Defined filters to h5repack.
Reviewed in H5T-61

Tested: local linux - cmake and autotools
2013-09-06 10:15:50 -05:00
Mohamad Chaarawi
a3e0aecb22 [svn-r24087] Rename the private H5RC (reference count) module to H5UC (Use Count).
This is needed to avoid a conflict with the Read Context object to be
introduced in another Project.

No impact on users, since this is a private module, and low for
developers as the RC module use is very sparse in the library.

Tested with h5committest.
2013-08-30 12:05:42 -05:00
Allen Byrne
e86655bbf4 [svn-r24057] Add --superblock long name to parser and add tests for both --boot-block and --superblock.
Tested: local linux
2013-08-22 14:57:31 -05:00
Allen Byrne
8c14af82c6 [svn-r24050] HDFFV-8498: --minimum option was disabled by HDFFV-8214. Reverted code change and changed default to 0 from 1024. Changed limit test to use h5dump to compare repacked file instead of h5diff.
Tested local linux with CMake
2013-08-21 15:59:49 -05:00
Allen Byrne
c502d81a8c [svn-r24029] Move TESTS to seperate file to allow easier editing by all developers.
Tested: local linux
2013-08-19 16:49:44 -05:00
Allen Byrne
b6f7e6e79c [svn-r24007] Update configure to support 64-bit cygwin
Tested: cygwin
2013-08-13 15:29:09 -05:00
Allen Byrne
5d0b400f69 [svn-r23996] HDFFV-7989: Add any_path option to search the file for paths. New test added, scripts updated, help text updated.
Tested: local linux
2013-08-12 16:58:31 -05:00
Allen Byrne
f1bb1129f3 [svn-r23979] Correct Packaging var names. 2013-08-09 09:55:22 -05:00
Allen Byrne
111a57ca26 [svn-r23978] Add Bundle and plist file. Update script file add icon 2013-08-08 16:25:32 -05:00
Vailin Choi
bdeb1f6c43 [svn-r23977] Update MANIFEST for previous checkin #23976.
h5committested.
2013-08-08 16:04:52 -05:00
Allen Byrne
1b6d1ca4f0 [svn-r23845] HDFFV-8394: Add Optional Examples source packaging option.
Tested: local linux
2013-06-28 10:37:41 -05:00
Allen Byrne
308106c0e9 [svn-r23829] HDFFV-8134: allow exclusion of attributes. This implements the technique and creates a test. Help changes will be added after trunk tests pass the test cycle.
Tested: local linux
2013-06-26 16:04:20 -05:00
Allen Byrne
6ca79dd149 [svn-r23753] HDFFV-8461: Add Windows /MT support
This adds the UserMacros.cmake Windows /MT support file.

Tested: local linux
2013-06-11 14:03:34 -05:00
Allen Byrne
feb14ea872 [svn-r23745] HDFFV-8461: Add Windows /MT support
This adds the UserMacros.cmake support needed.
2013-06-10 12:46:48 -05:00
Allen Byrne
f0a9b781f3 [svn-r23740] HDFFV-8447: subsetting broke data output file option.
Reviewed in H5T-59, tested local linux
2013-06-07 13:39:54 -05:00
Albert Cheng
7d0aded13a [svn-r23662] Bug fix: HDFFV-8236
Some files are not distributed when release tarball is created by bin/release
according to MANIFEST.  But --enable-build-all compiles them in test/.

Solution:
Distributed those missing files for now.  Need to resolve if these files
should be distributed or not.  And if not, fix --enable-build-all NOT to
compile them.

Tested: use bin/release to generate the tarball and run --enable-build-all with
it. Error is gone and all passed.
2013-05-02 07:50:08 -05:00
Raymond Lu
bada3f7a86 [svn-r23656] Issue 8380 H5Zunregister caused seg fault: I added some protection measures:
1. If any opened object uses the filter, let it fail.
  2. Flush all opened files to push any cached data to files.

Tested with h5committest.
2013-04-29 14:23:04 -05:00
Allen Byrne
3c79c08dbe [svn-r23649] Correct file reference in pack list
Rename and update CMake docs.
2013-04-29 09:18:34 -05:00
Albert Cheng
613c5e8046 [svn-r23638] Removed INSTALL_MinGW because,
1. The file states that:
NOTE:
We are no longer actively supporting MinGW as of 1.8.5.
2. It is not tested for v1.8.11.
3. If we ever supports it again, it can be "restored" from previous
release (e.g. v1.8.10).)
2013-04-26 18:02:57 -05:00
Quincey Koziol
8277409a9b [svn-r23549] Description:
More misc. cleanups, but main change is to make an "extern" header file
for the plugin interface.

Tested on:
    Mac OSX/64 10.8.3 (amazon)
2013-04-04 15:57:59 -05:00
Raymond Lu
46b63fe7d8 [svn-r23515] I added test/dynlib3.c. 2013-04-01 18:38:40 -05:00
Raymond Lu
6c974c824d [svn-r23495] ported revisions 23433:23494 from the trunk 2013-03-29 18:13:05 -05:00
Raymond Lu
5b12b8e122 [svn-r23465] I moved dynlib1.c to test/ directory and revised the Makefile.am in test/. I added the condition to skip
plugin.c test when the library is built for static.

Tested on jam, koala, and emu.
2013-03-27 10:39:16 -05:00
Elena Pourmal
01765e3079 [svn-r23437] Removed duplicated line in the MANIFEST file (exposed by the daily tests) 2013-03-23 10:40:50 -05:00
Raymond Lu
8ffd55478e [svn-r23432] I added a new macro HDF5_PLUGIN_PRELOAD to skip plugin loading during data reading.
Tested on koala and jam.
2013-03-22 16:39:53 -05:00
Allen Byrne
59a9d9a0c6 [svn-r23403] Refactor windows code:
windows uses ';' as path separator
windows default path is different
windows find files needs '*.*'
2013-03-20 13:21:28 -05:00
Allen Byrne
7c70c816f5 [svn-r23399] Add missing CMakeLists.txt file 2013-03-20 09:26:04 -05:00
Quincey Koziol
af9a3abb3d [svn-r23380] Description:
Review & cleanup code.
2013-03-18 23:22:34 -05:00
Raymond Lu
08359be858 [svn-r23347] ported revision 23248:23346 from the trunk 2013-03-13 17:34:23 -05:00
Raymond Lu
55822485c6 [svn-r23346] First commit for DESY project. It has the basic functionality of loading dynamically filter libraries and a simple test for it.
Tested on koala.
2013-03-13 14:35:26 -05:00
Peter Cao
4cb3d328ca [svn-r23207] add the new test file to the list. 2013-01-30 16:09:56 -05:00
Allen Byrne
5650be2d1a [svn-r23193] Rename ddl export file and force file write on copy for windows.
Tested: local linux
2013-01-23 08:48:54 -05:00
Allen Byrne
ff421d9424 [svn-r23190] HDFFV-8285: Add suppress ddl option.
Tested: local linux
2013-01-22 15:43:12 -05:00
Allen Byrne
c80e3a0d13 [svn-r23168] HDFFV-8169: String binary dump testfiles 2013-01-16 13:35:48 -05:00
Allen Byrne
2a7ae0367b [svn-r23163] HDFFV-8285: H5dump suppress ddl option testfile additions 2013-01-15 09:31:24 -05:00
Raymond Lu
3a7b11863a [svn-r23152] I took out the obsolete function H5PSIwrite_chunk and its related test and performance test.
Tested on koala.
2013-01-11 16:34:31 -05:00
Raymond Lu
81bcd314a9 [svn-r23147] ported revisions 23081:23145 from the trunk 2013-01-09 15:23:07 -05:00
Raymond Lu
6050e78143 [svn-r23097] I changed H5Dopen to H5Dopen2 in test/dectris_tst.c and hl/test/test_dset_opt.c. I added
hl/test/dectris_hl_perf.c
    perform/dectris_perf.c
    test/dectris_tst.c

Tested on koala.
2012-12-13 11:13:43 -05:00
Raymond Lu
fc9ed51a3a [svn-r23087] I updated MANIFEST to include the new files hl/src/H5DO.c, H5DOpublic.h, H5DOprivate.h. I included H5DOpublic.h into hl/src/hdf5_hl.h.
Tested on koala.
2012-12-10 14:08:30 -05:00
Raymond Lu
b7e1b629e9 [svn-r23081] ported revisions 22987 to 23080 from the trunk 2012-12-06 11:02:01 -05:00
Raymond Lu
0cf58a4755 [svn-r22987] ported revisions from 22742 to 22986 from the trunk 2012-10-29 13:59:05 -05:00
Allen Byrne
1f8fb63581 [svn-r22709] HDFFV-8129: reconfigured on jam, Remove overloading of autotools TESTS var, rename configure.in to configure.ac, convert test scripts from hard *.sh to configure managed *sh.in files.
Tested: h5committest
2012-08-23 11:07:43 -05:00
Jonathan Kim
231fc4d781 [svn-r22684] Purpose:
Address HDFFV-7942 - h5diff: incorrect result for comparing attribute data with different type size in same class

Description:
   When comparing attribute data values with same type class but different size, the result was incorrect.  It was due to the size difference and got truncated. 
   Fixed to match up the smaller type size to big type size like what dataset does.

  
Tested: 
 jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), cmake (jam)
2012-08-15 11:04:26 -05:00
Allen Byrne
b5ef63b550 [svn-r22599] FinHDF5 should be generated during build. 2012-07-24 09:10:05 -05:00
Allen Byrne
4a6f93f895 [svn-r22588] HDFFV-721: h5dump supplies input for h5import
Tested: local linux with cmake
        jam with configure
2012-07-19 14:53:17 -05:00
Allen Byrne
a947f3b755 [svn-r22568] fix another typo - due to wrong edit state! 2012-07-12 16:50:26 -05:00
Allen Byrne
210d04b05f [svn-r22567] HDFFV-7784: add attributes to the list of file contents option for h5dump. This is accomplished by adding an optional value to the option (-n)
Created test and reference files.

Tested: local linux with cmake
2012-07-12 15:30:30 -05:00
Allen Byrne
1942f47bcf [svn-r22566] correct typo of new files names 2012-07-12 11:51:30 -05:00
Allen Byrne
b54b3fcf29 [svn-r22563] HDFFV-8095: index order of links wrong
Create setters for indexing options in h5trav.c to be set before the obj table is created. 
Revert h5trav_print to remove now duplicated parameters.
Added test and testfiles.

Tested: local linux with cmake
2012-07-12 10:38:44 -05:00
Allen Byrne
fa28c69b55 [svn-r22561] Add errfile to list.
Create missing errfile, edit ddl file for test only on linux (not using cmake).
2012-07-12 08:52:31 -05:00
Allen Byrne
7bed6ec213 [svn-r22557] Add missing test file 2012-07-11 15:46:12 -05:00
Allen Byrne
d987b06112 [svn-r22556] HDFFV-7936: added error files in h5dump folder and adjusted scripts to compare error files.
Tested: local linux with cmake,
   jam with make check
2012-07-11 15:12:31 -05:00
Allen Byrne
91d63fa0ae [svn-r22548] added test for "-w0" option
Tested: local linux
2012-07-10 14:51:56 -05:00
Allen Byrne
87fe8971ed [svn-r22544] Add test to verify use of named datatypes
HDFFV-2687
Tested: local linux with cmake
2012-07-10 12:12:06 -05:00
Allen Byrne
17eca872f1 [svn-r22531] HDFFV-5942: sort options with contents option
Added static local variables in h5trav to hold the index_by and index_order values. Defaults are set.
H5dump only use of the trav_print function, added two parameters and passed in the sort_by and sort_order variables.

Tested: local linux
2012-07-09 14:41:17 -05:00
Allen Byrne
6f5ba815f0 [svn-r22516] Add new testfiles for h5dump with eight varieties of ints and used in an Attribute and Compound datatypes.
Tested: local linux using CMake
2012-07-05 14:59:36 -05:00
Allen Byrne
721e652427 [svn-r22506] HDFFV-7782: resolve names of tests files with tests - added two copies of references files and adjusted CMake and linux test script.
Tested: local linux w/ CMake
2012-07-02 12:35:11 -05:00
Allen Byrne
2a3c0587ed [svn-r22499] Add seconf new file! 2012-06-27 14:41:21 -05:00
Allen Byrne
a30bf0f61a [svn-r22497] Added new file 2012-06-27 14:24:23 -05:00
Vailin Choi
73db2056a3 [svn-r22444] (1) fix for making MEM_GHEAP as MEM_DRAW
(2) fix to extend into the aggregator based on threshold
(3) fix for the "flavor" logging problem
(4) fix for test failures due to the above fixes
(5) bug fix for h5stat when h5stat against a non-existing file
2012-06-07 11:04:56 -05:00
Allen Byrne
d419d8a417 [svn-r22431] Extension is cpp! 2012-06-04 12:41:26 -05:00
Allen Byrne
7b1ea8aa2a [svn-r22430] CMake and configure synchronization effort. CMake added most tests and options: DEBUGPKG not addressed.
Still needed: compiler wrapper scripts

Tested: local linux(cmake) and h5committest
2012-06-04 12:05:02 -05:00
Larry Knox
f4990be635 [svn-r22426] Add examples/README file to be installed with examples.
Text file only, but tested with h5committest.
2012-06-02 13:54:58 -05:00
Allen Byrne
b904ca7ec3 [svn-r22391] HDFFV-7999: h5dump did not display H5T_DSET_UTF8.
Changed if/else block to switch like in h5ls, and distinguished between ERROR and UNKNOWN.
Reviewed by JKM
Tested: local linux
2012-05-22 16:36:45 -05:00
Allen Byrne
2f8b5057c1 [svn-r22390] Break out the packed bits tests into a new script.
reconfigure on jam
Tested: local linux
2012-05-22 15:34:34 -05:00
Larry Knox
7e33b49405 [svn-r22369] Change case of filename to match file. 2012-05-14 22:12:31 -05:00
Allen Byrne
45e119b7d2 [svn-r22368] change file name case 2012-05-14 17:36:04 -05:00
Jonathan Kim
1b35c60118 [svn-r22319] Purpose:
Fix for HDFFV-7998-h5diff: incorrect behavior and output for comparing symbolic dangling links without following-symlinks option 

Description:
  Fix not to check and display dangling link status without --follow-symlinks option.
  Berfor the fix, when comparing symbolic link to symbolic link without follow-symlinks option, h5diff followed to check if those links are dangling or not. It caused to display output incorrectly (dangling link instead of symbolic link).
  
  The fix also improved performance when comparing lots of symbolic links without the --follow-symlinks option.
  Test cases were added and tagged with jira#.

Tested:
  jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE),  Windows (32-LE cmake), Cmake (jam)
2012-04-26 10:56:16 -05:00
Jonathan Kim
10b62203a3 [svn-r22277] Purpose:
Fix for HDFFV-7993 - h5repack fails with error "chunk size must be <= maximum dimension size for fixed-sized dimensions"

Description:
  Fixed a failure when change the chunk size of a specified chunked dataset with unlimited max dims.
  Also took care of converting to contiguous and compact from the dataset.
  Test cases were added and tagged with jira#.

Tested:
  jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE),  Windows (32-LE cmake), Cmake (jam)
2012-04-11 15:57:10 -05:00
Quincey Koziol
c2a9dcb897 [svn-r22219] Description:
Merge "file image" changes from feature branch back to trunk.

Tested on:
    Mac OSX/64 10.7.3 (amazon) w/debug
    (h5committest upcoming)
2012-03-31 03:49:35 -05:00
Jonathan Kim
6cef6bca1f [svn-r22176] Purpose:
Fix for HDFFV-7644 GMQS: h5diff - incorrect behaviors when comparing HDF5 files with different type of objects (dataset, group, type) as common objects

Description:
  Fixed failure for comparing same named object with different object types in comparing groups. (common object comparison)
  Prior to the fix, h5diff resulted in error. After the fix, h5diff detects such case as non-comparable and display messages accordingly.
  Test cases were added and tagged with jira#.

Tested:
  jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE),  Windows (32-LE cmake), Cmake (jam)
2012-03-28 17:09:38 -05:00
Jonathan Kim
d476ce138b [svn-r22114] Purpose:
Fix for HDFFV-7837 - h5diff: incorrect behavior with exclude-path option when unique object exist only in one file

Description:
  If unique objects exists only in one file and try to exclude
  the unique objects with --exclude-path option, h5diff missed 
  excluding some objects. 
  Fixed to exclude objects correctly in such case.
  Test cases were added and tagged with jira#.


Tested:
  jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE),  Windows (32-LE cmake), Cmake (jam)
2012-03-21 16:00:15 -05:00
Allen Byrne
14bc79b1b8 [svn-r22090] Reorder tools/h5jam/testfiles ordering 2012-03-19 10:05:19 -05:00
Allen Byrne
207c05e2e9 [svn-r22075] Add test for multiple files with h5ls and h5dump.
Tested: local linux
2012-03-15 15:44:51 -05:00
Allen Byrne
9f35a8b04e [svn-r22068] HDFFV-7876: wildcard filenames
The test scripts for cmake, on windows, and the h5ls shell script do not work properly.

Tested: h5committest
2012-03-14 13:36:21 -05:00
Jonathan Kim
0a46593a38 [svn-r22038] Purpose:
Fix for HDFFV-7835 h5diff: incorrect result for comparing the two same type symlinks as dangling links.

Description:
  When two symbolic dangling links are compared with --follow-symlinks option,
  the result should be same. It works for comparing two files, but didn't work
  for comparing two objects. 
  Test cases were added and tagged with jira#.


Tested:
  jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE),  Windows (32-LE cmake), Cmake (jam)
2012-03-09 15:34:37 -05:00
Allen Byrne
7149676a0b [svn-r22028] add new test file 2012-03-05 14:41:11 -05:00
Allen Byrne
deec94bf4a [svn-r21992] Remove old testfile 2012-02-27 14:41:27 -05:00
Allen Byrne
fb762aa6b0 [svn-r21953] HDDFV-7560: h5dump refactoring
Tested: local linux
2012-02-17 16:41:58 -05:00
Allen Byrne
12339b0759 [svn-r21931] HDFFV-7689 - could not not use a "[" character in a dataset name.
A second problem also discovered was an if statement that should have comapered lengths of a string actually was comapring addreeses. Once thatt was fixed, The "[" character could be used but broke other functionality. Consultation with tools team resulted in the creation of a "--no-subset" option to disable interpretation of "[" character as a subsetting compact-form. This also eliminated and cleaned up the code containing the plomatic if statement.

Tested: local linux and added test, CMake updated autotools test to be added next.
2012-02-13 09:18:09 -05:00
Jonathan Kim
13ef2d1fbb [svn-r21890] Purpose:
Fix for HDFFV-7836 h5diff: displays error stack message for comparing the two dangling symlink with follow-symlinks option

Description:
  While ago, to improve performance, skipping same object checking 
  (h5tools_is_obj_same()) was added. 
  However the checking function doesn't understand about the dangling link and
  caused the issue. 
  Since handling dangling link code section already implemented, move the 
  checking function after handling dangling-links to address the problem.
  Test was added and tagged with jira#.


Tested:
  jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE),  Windows (32-LE cmake), Cmake (jam)
2012-01-24 15:39:59 -05:00
Jonathan Kim
d174933e19 [svn-r21865] Purpose:
Fix for HDFFV-7838 h5ls: segfault for handling region reference in attribute with -v option

Description:
  Segfault occurred when h5ls access region reference data in an attribute. 
  This didn't occurred when -v option was used. 
  The cause was "h5tool_format_t info;" struct variable members were accessed
  without proper values were assigned (was NULL), so printf failed later in the code.
  
Tested:
 jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE),  cmake-Windows (32-LE)
2012-01-05 10:16:03 -05:00
Allen Byrne
de5c708448 [svn-r21856] Remove cdash variables for use with CTestScript.cmake processing.
Tested: windows
2011-12-30 13:30:47 -05:00
Allen Byrne
63f8f1ec66 [svn-r21847] CTestScript generalized and not needed inside project. 2011-12-22 14:09:12 -05:00
Allen Byrne
79c347c1ee [svn-r21840] Created CTestScript.cmake to better control the cmake processing of configuration, compile, test, and packing.
Tested: local linux
2011-12-21 14:46:47 -05:00
Allen Byrne
8b2bbfc853 [svn-r21814] HDFFV-2567 - added test for be generated files with at least 9 attributes at root
Tested: local linux
2011-12-05 15:34:29 -05:00
Allen Byrne
a529e1ae55 [svn-r21787] Unify CMake config macros, split base macros from ext lib macros
Tested: local linux
2011-12-01 09:13:44 -05:00
Allen Byrne
49fabfad86 [svn-r21710] CMake FindMPI module changed to look for fortran libs. Cmake files updated to link with fortran mpi libs.
Updated cacheinit.cmake to set num of procs to 3 for hdf testing.

Tested: local linux and on windows 7
2011-11-03 16:06:37 -05:00
Allen Byrne
e22ceb45c9 [svn-r21702] remove obsolete cmake config module - exists in cmake 2.8.6 2011-11-02 13:50:43 -05:00
Jonathan Kim
24fc368ac0 [svn-r21397] Fix mis-spell non_comparables#.h5. It's from previous checkin for HDFFV-7693. (r21396) 2011-09-16 14:35:52 -05:00