Commit Graph

1378 Commits

Author SHA1 Message Date
Binh-Minh Ribler
fdb1202f50 Description:
Added test file titerate.cpp.
Platform tested:
    Verified with bin/chkmanifest
2016-10-12 08:06:59 -05:00
Allen Byrne
8c49b6e05a HDFFV-9991: Remove uneeded file 2016-10-04 09:36:01 -05:00
Dana Robinson
cbc260e636 - Removed BRANCH.txt and MANIFEST entry
- Fixed a missing line in H5Dint.c
2016-09-30 13:06:12 -04:00
Dana Robinson
12fbb4426a Updated manifest. Was missing BRANCH.txt. 2016-09-19 13:04:07 -04:00
Dana Robinson
7f817fea7c Merge branch 'develop' into evict_on_close 2016-09-14 17:02:43 -04:00
lrknox
1bad18cc24 Add bin/pkgscrpts files to MANIFEST. 2016-09-02 12:57:27 -05:00
lrknox
a4c60918a7 Added .gitignore and .gitattributes files with contents from the last
git mirror or the hdf5 repository prior to the manual migration of the
hdf5 svn repository to the git repository in bitbucket.
Added entries to MANIFEST for the 2 new files.
2016-09-01 16:15:15 -05:00
Allen Byrne
b947f7e911 [svn-r30321] HDFFV-9974: Correct parsing of UD filter parameters.
Verified by user, who reported issue.
2016-08-25 13:57:27 -05:00
Allen Byrne
0e99aa203a [svn-r30240] JAVA-1920: Create a filter plugin test that has a filter which calls a HDF5 function. 2016-08-01 13:17:36 -05:00
Allen Byrne
db7a701126 [svn-r30232] HDFFV-9953, -9955: Add new testfiles to h5dump generator and tests. 2016-08-01 12:03:56 -05:00
Allen Byrne
2387b1efbd [svn-r30211] Remove extra cygwin files 2016-07-20 13:31:15 -05:00
Allen Byrne
33e8407350 [svn-r30207] Change cygwin files to a single file 2016-07-20 10:03:09 -05:00
Scot Breitenfeld
304d85c3e7 [svn-r30196] HDFFV-9467: Use the same test programs for CMake and autotools
Tested: jelly (gnu)
2016-07-18 13:37:17 -05:00
Dana Robinson
75aa26981b [svn-r30084] First pass at the evict-on-close feature.
The features is controlled via H5Pset/get_evict_on_close()
and is currently enabled by default (it will be disabled
by default in the final implementation).

There is a bug in the code where the eviction of tagged
metadata fails due to some of the metadata being dirty,
resulting in error return values and test failures.
2016-06-15 13:55:59 -05:00
Quincey Koziol
d3396a7953 [svn-r30075] Description:
Bring object/dataset/group/named datatype features from revise_chunks
branch to trunk.  Also CMake support for h5format_convert and a bunch of
misc. cleanups.

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
2016-06-14 18:07:03 -05:00
Quincey Koziol
7a9e13afdb [svn-r30068] Description:
Bring metadata cache corking to trunk.

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
2016-06-13 12:49:39 -05:00
Quincey Koziol
d124a1fe47 [svn-r30035] Description:
Extract tagging routines into separate source module.

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial & parallel
    (h5committest forthcoming)
2016-06-06 01:41:16 -05:00
Quincey Koziol
e1f276f267 [svn-r30033] Description:
Extract epoch marker metadata client into separate source file.

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial & parallel
    (h5committest forthcoming)
2016-06-06 00:51:17 -05:00
Quincey Koziol
3384f4c0b9 [svn-r29985] Description:
Extract query routines into separate source module.

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial & parallel
    (h5committest not required on this branch)
2016-05-30 04:06:26 -05:00
Quincey Koziol
bf566b775b [svn-r29969] Description:
Bring r29934 from revise_chunks branch to trunk:

(1) Fix for HDFFV-9434: throw an error instead of assertion when v1 btree level hits the 1 byte limit.
(2) Modifications to better handle error recovery when conversion by h5format_convert fails.

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
2016-05-29 05:57:47 -05:00
Quincey Koziol
18ad868b23 [svn-r29924] Description:
Bring h5format_convert tool from revise_chunks branch to trunk.

Tested on:
    MacoSX/64 10.11.4 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
2016-05-12 15:47:03 -05:00
Allen Byrne
740d4a3b6f [svn-r29888] Correct spelling of testfile name 2016-05-04 13:13:54 -05:00
Allen Byrne
2f1b517021 [svn-r29884] VDS correction for get_space_status, with test change.
Add new files for repack tests.
Add repack tests for VDS files.
2016-05-04 11:38:08 -05:00
Allen Byrne
2d36359035 [svn-r29874] Move hl/tools/gif2h5 CMake code to subfolder. 2016-05-04 10:54:31 -05:00
Allen Byrne
f1633a5fe2 [svn-r29873] Java add missing APIs.
Adjust whitespace in H5.java for exception indentation.
Adjust whitespace in JNI for function signature formatting.
2016-05-04 10:52:40 -05:00
Quincey Koziol
2e3e3f9cd3 [svn-r29857] Description:
Bring H5LD* routines from revise_chunks branch to trunk.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
2016-05-03 01:27:55 -05:00
Quincey Koziol
a6ce3d4e45 [svn-r29850] Description:
Bring H5DOappend(), H5P[s|g]et_object_flush_cb, and H5P[s|g]et_append_flush
from revise_chunks branch to trunk.  Brings along updated metadata cache
entry tagging, and the internal object flush routine.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
2016-05-01 05:24:56 -05:00
Quincey Koziol
ac72823bc2 [svn-r29844] Description:
Minor rearrangements, to align with revise_chunks branch

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
2016-04-30 22:18:00 -05:00
Quincey Koziol
4f831405cb [svn-r29779] Description:
Bring over some of the tool testing for the new chunk indices.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
2016-04-24 03:21:09 -05:00
Quincey Koziol
b2d6d68d5d [svn-r29770] Description:
Bring 'none' chunk index from revise_chunks branch to trunk.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (w/check-vfd)
    (h5committest forthcoming)
2016-04-23 00:03:00 -05:00
Quincey Koziol
f7aff7d5cf [svn-r29738] Description:
Bring "single" chunk index from revise_chunks branch to trunk.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (w/check-vfd)
    (h5committest forthcoming)
2016-04-18 23:21:12 -05:00
Quincey Koziol
36062736a5 [svn-r29722] Description:
Bring over more dataset tests from the revise_chunks branch.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
2016-04-17 02:26:51 -05:00
Dana Robinson
e5c94192d7 [svn-r29659] Added fixed array chunk indexing from revise_chunks.
Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1
           Autotools serial w/ Java, Fortran, & C++
2016-04-07 13:21:47 -05:00
Quincey Koziol
5d46ad9b39 [svn-r29635] Description:
Bring support for earray and v2 B-trees from revise_chunks branch to
trunk.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
2016-04-05 02:12:56 -05:00
Dana Robinson
8ed8520c19 [svn-r29537] Added "latest format" tests to h5copy and h5repack from revise_chunks.
Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1
           autotools serial
           cmake serial
2016-03-23 14:32:59 -05:00
Allen Byrne
bb80d618be [svn-r29519] rename java test file because test modifies original file. 2016-03-22 14:58:35 -05:00
Allen Byrne
7f8f2feaf9 [svn-r29450] Separate error compare from output compare 2016-03-16 12:35:51 -05:00
Allen Byrne
f9dd7f1a80 [svn-r29403] Correct file location and add overview to makefile 2016-03-14 13:32:31 -05:00
Allen Byrne
85711b31d8 [svn-r29399] HDFFV-9717: add overview section to javadocs 2016-03-14 12:51:41 -05:00
Allen Byrne
40cdbe0b8d [svn-r29274] HDFFV-9698: fix subsetting issues with h5dump 2016-03-04 15:41:12 -05:00
Binh-Minh Ribler
2a714ac4c0 [svn-r29270] Description:
Updated for "Improve Packet Table library" commit 29269.
2016-03-04 14:50:52 -05:00
Allen Byrne
63249be0e1 [svn-r29226] HDFFV-9552: merge in java code. 2016-02-28 21:43:00 -05:00
Allen Byrne
f7689087de [svn-r29186] HDFFV-9654: add VDS options to h5dump
includes new data files
2016-02-23 15:23:46 -05:00
Scot Breitenfeld
c418bc964d [svn-r29062] HDFFV-9564: Implement VDS Fortran wrappers.
Tested: h5committest.new
2016-02-08 09:01:29 -05:00
Dana Robinson
20a3462089 [svn-r28977] Added autotools g++ compiler flags/warnings file to config/
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
           autotools serial w/ C++
2016-01-27 01:23:40 -05:00
Binh-Minh Ribler
a7ef06d593 [svn-r28906] Description:
Added c++/test/tarray.cpp.
2016-01-15 10:57:00 -05:00
Larry Knox
c09393ed0a [svn-r28902] Remove 3 files in autom4te.cache from MANIFEST. They are generated by autogen.sh and were inadvertently added along with configure and Makefile.in files but are not checked in and should not be installed. Furthermore they are not generated on all systems by autogen.sh and cause chkmanifest to fail when run be release scripts. 2016-01-14 16:56:16 -05:00
Dana Robinson
b29d6174e1 [svn-r28881] Merged r28880 from revise_chunks. Adds a script to flip maint mode.
Tested on: linux VM
2016-01-13 11:25:11 -05:00
Allen Byrne
af88e57c26 [svn-r28866] HDFFV-9639: new files 2016-01-12 15:38:20 -05:00
Dana Robinson
ae8e3348cf [svn-r28655] Updated MANIFEST :/ 2015-12-15 00:38:03 -05:00
Albert Cheng
bbfd8a30aa [svn-r28373] HDFFV-9573: Our helper tests bin/release and bin/h5vers are not working properly
bin/release uses the content of MANIFEST file to build the release tarball. But all the files generated by autogen had been removed. Therefore the release would not contain those needed generated files for a proper release.

Solution: Added all those generated files to the tail of MANIFEST and titled it accordingly. (Somehow bin/chkmanifest does not complain against these entries though they are not svn managed. This needs further investigation.)

Test: bin/release generated the release tarball in jam, then use it in Platypus to do a full build (--enable-fortran --enable-cxx). All passed.
2015-11-17 09:37:17 -05:00
Quincey Koziol
5f6e580533 [svn-r28346] Description:
Bring in cleanups from revise_chunks branch.

Tested on:
    MacOSX/64 10.11.1 (amazon) w/serial & parallel
    (too minor to require full h5committest)
2015-11-14 22:32:00 -05:00
Dana Robinson
f7b73969f3 [svn-r28332] Updated autogen.sh to not run flex/bison.
This was giving a lot of users headaches and the parser code rarely
changes. There is now a new script (bin/genparser) which can be
run as needed.

Tested on: Ubuntu 15.10 (x86_64 Linux 4.2.0)
    gcc 5.2.1, flex 2.5.39, bison 3.0.2
2015-11-13 06:24:43 -05:00
Allen Byrne
6a6e921d2f [svn-r28152] Correct define vs variable usage
Add VS2015
2015-10-20 17:11:10 -05:00
Allen Byrne
22f78e766c [svn-r27974] Change distribution of scripts 2015-10-06 13:52:48 -05:00
Elena Pourmal
086904a50d [svn-r27969] Added autogen.sh to the list of the distributed files. 2015-10-06 12:15:59 -05:00
Binh-Minh Ribler
f416522d56 [svn-r27962] Description:
Added c++/src/H5OcreatProp.[h/cpp]
    Checked with bin/chkmanifest
2015-10-05 23:35:15 -05:00
Quincey Koziol
718b311c11 [svn-r27860] Description:
Sync w/changes on trunk

Tested on:
    Not necessary, text only...
2015-09-23 10:40:48 -05:00
Scot Breitenfeld
1cd606b5e0 [svn-r27854] fixed typo in name of file 2015-09-22 10:26:25 -05:00
Quincey Koziol
4ad84456b3 [svn-r27850] Description:
Sync w/trunk

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial
    (h5committest not required on this branch)
2015-09-21 19:35:47 -05:00
Allen Byrne
9edd184ae9 [svn-r27846] Fix generated files process.
Add script for post processing of flex/bison files.
2015-09-21 15:05:23 -05:00
Dana Robinson
209df7c3b0 [svn-r27839] Removed generated autotools stragglers missed in trunk sync. 2015-09-21 03:36:01 -05:00
Quincey Koziol
0695d6366a [svn-r27835] Description:
Sync w/trunk.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & parallel
    (h5committest not required on this branch)
2015-09-20 21:18:45 -05:00
Dana Robinson
132ab9c2f3 [svn-r27828] Removed Perl-generated header files and H5LT parse code created by flex/bison.
Tested on: jam
2015-09-18 15:46:04 -05:00
Neil Fortner
d23cc2da70 [svn-r27806] Fix property list serialization for values encoded by H5Pset_chunk_cache to be
compatible between 32 and 64 bit systems.
Expand cross platform property list encode/decode testing.
Fix warning in H5P__fill_value_enc.

Tested: jam, koala, ostrich (h5committest), ummon
2015-09-16 14:55:38 -05:00
Dana Robinson
9af344117c [svn-r27794] Reintegration merge of features/autotools_rework branch with trunk
NOTES:

- Developers will have to run autogen.sh before building with the autotools.

- autogen.sh takes the -p option to mimic the old bin/reconfigure behavior.

- The generated error, overflow and version headers have been left in place.

- The generated H5LT parser code has also been left in place.

- There are no changes for CMake users at this time.

Tested on: h5committest
2015-09-15 15:38:57 -05:00
Dana Robinson
1177e64925 [svn-r27787] Merge of r27632-27674 from the trunk.
Tested on: h5committest
2015-09-15 08:01:01 -05:00
Dana Robinson
2416d5e8ce [svn-r27776] Fixed MANIFEST
Tested on: bin/chkmanifest
2015-09-14 15:13:12 -05:00
Dana Robinson
b5eaacb911 [svn-r27775] Undo of r27655
Removes .pl extension from Perl scripts. This may be returned in the future,
but it's best to keep the script names unchanged while we merge with the
trunk.

Tested on: h5committest
2015-09-14 15:11:43 -05:00
Quincey Koziol
1023374492 [svn-r27768] Description:
Complete revamp of package initialization/shutdown mechanism in the library.
Each package now has a single init/term routine.

    This new way should avoid packages being re-initialized during library
shutdown and is also be _much_ more proactive about giving feedback for
resource leaks internal to the library.

    Introduces a new "module" header file for packages in the library
(e.g src/H5Fmodule.h) which sets up some necessary package configuration macros
for the FUNC_ENTER/LEAVE macros.  (The VFL drivers have their own slightly
modified version of this header, src/H5FDdrvr_module.h)

    Also cleaned up a bunch of resources leaks all across the library and tests,
along with addressing many warnings, as I encountered them.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & parallel
    Linux/64 3.10.x (kituo) w/serial & parallel
    Linux/64 2.6.x (ostrich) w/serial
2015-09-13 22:58:59 -05:00
Dana Robinson
122bf84bb3 [svn-r27760] Brought r27631-27755 over from the trunk.
tested on: jam
2015-09-11 09:08:04 -05:00
Allen Byrne
10da31a926 [svn-r27745] Merge trunk revision 27744 2015-09-10 09:11:17 -05:00
Dana Robinson
27f9e67d1e [svn-r27734] Fixed MANIFEST
Tested on: bin/chkmanifest
2015-09-09 21:57:38 -05:00
Dana Robinson
77525ea95d [svn-r27655] Add .pl extension to Perl scripts in bin (part of HDFFV-9513)
This makes things easier on Windows, where we will have to run
Perl scripts as a part of CMake.

Tested on: jam
2015-09-01 11:28:05 -05:00
Dana Robinson
099618ad48 [svn-r27653] Merge of r27645 from the autotools branch.
Updates to older special config files in configure.ac:

- solaris2.x renamed to solaris. There are recent changes to this file
  but the "2.x" is misleading since the changes are applied to all
  versions.

- Removed support for OSF 4.x/5.x (Digital and Tru64 Unix). We no
  longer have the config files for these.


Tested on: h5committest
2015-09-01 11:12:53 -05:00
Dana Robinson
d2cbacb945 [svn-r27649] Fixed MANIFEST
tested on: jam (bin/chkmanifest)
2015-09-01 10:09:37 -05:00
Dana Robinson
bb8c64169b [svn-r27642] Removed comments from MANIFEST regarding distributing the
gen_* files in test/. These files will remain distributable since
they are needed if a user specifies --enable-build-all.

Fixes HDFFV-8236

Tested on: jam (bin/chkmanifest only)
2015-09-01 01:34:14 -05:00
Dana Robinson
1177a5cbbc [svn-r27639] Fixed MANIFEST 2015-08-31 23:39:31 -05:00
Dana Robinson
59aa015d9f [svn-r27638] Merged r27500-27631 from trunk. 2015-08-31 23:36:17 -05:00
Quincey Koziol
2c91cbecc6 [svn-r27630] Description:
Bring in changes from the trunk, through r27628.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial
    (h5committest not required on this branch)
2015-08-31 15:14:57 -05:00
Scot Breitenfeld
e6f9fc5f7f [svn-r27625] Added preprocessor commands for PGI compiler.
tested: h5committest
2015-08-31 13:49:17 -05:00
Quincey Koziol
b68b9d8786 [svn-r27612] Description:
Align w/vds branch: Whitespace cleanup, move common code for opening a
dataset into a new routine, misc. style cleanups.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & parallel
    (h5committest upcoming)
2015-08-28 20:43:37 -05:00
Quincey Koziol
c2ce904d5d [svn-r27598] Description:
Check in misc. minor code cleanups, found during code review
2015-08-27 16:52:15 -05:00
Neil Fortner
c365b9a59f [svn-r27593] Merge revisions 27453 through 27592 from trunk to vds branch.
Tested: ummon
2015-08-27 12:06:54 -05:00
Dana Robinson
2e6100fb23 [svn-r27572] Removed VMS-specific code from the library.
The only remaining code consists of a few floating-point tests
that rely on pre-generated and checked-in VMS files. These have
been left alone, even though they will not be possible to
recreate, since testing VMS float behavior is still important.

Tested on: h5committest
2015-08-24 15:19:39 -05:00
Scot Breitenfeld
1436a07905 [svn-r27537] Added new FCCPPFLAGS to avoid passing CPPFLAGS to the fortran pre-processor compiler (This mainly causes issues with the xlf compilers)
Tested: h5committest
2015-08-20 11:01:26 -05:00
Dana Robinson
dc13fabc14 [svn-r27508] Updated MANIFEST after merge.
Tested on: jam (bin/chkmanifest only)
2015-08-14 15:57:14 -05:00
Binh-Minh Ribler
53d53ee0ee [svn-r27495] Description:
Added ./c++/src/footer.html
2015-08-11 12:50:02 -05:00
Scot Breitenfeld
caf0e7692a [svn-r27493] Trying again to merge the F2003_v1.10 branch to the trunk.
Tested: h5committest --PASSED--
2015-08-11 09:35:30 -05:00
Scot Breitenfeld
3b4696ccd1 [svn-r27489] reverted merge of branch 2015-08-10 20:22:33 -05:00
Allen Byrne
9e2434625d [svn-r27469] Merge from trunk with dual-binary CMake code.
Tested: local linux with CMake
2015-08-05 16:01:07 -05:00
Neil Fortner
5065c139c7 [svn-r27397] Merge revisions 27255 through 27393 from trunk to vds branch.
Tested: ummon
2015-07-15 15:33:50 -05:00
Scot Breitenfeld
03ad911d3d [svn-r27388] Removed robodoc documenation. 2015-07-14 16:26:27 -05:00
Scot Breitenfeld
2c897f41c0 [svn-r27378] svn merge -r27326:27377 https://svn.hdfgroup.uiuc.edu/hdf5/trunk 2015-07-14 10:34:45 -05:00
Scot Breitenfeld
717609a674 [svn-r27373] moved building generated test APIs to a sperated build program (was in fortran/src/H5_buildiface.F90) 2015-07-13 13:54:09 -05:00
Allen Byrne
8bbe712961 [svn-r27364] Add Mac Framework support 2015-07-09 11:56:16 -05:00
Scot Breitenfeld
3653d2ad01 [svn-r27360] moved H5test_kind.F90 H5_buildiface.F90 2015-07-09 10:21:11 -05:00
Scot Breitenfeld
2b7f0d4780 [svn-r27357] svn merge -r27208:27356 https://svn.hdfgroup.uiuc.edu/hdf5/trunk 2015-07-09 08:47:35 -05:00
Scot Breitenfeld
b0afa2ab61 [svn-r27355] added generation of HL Fortran Interfaces for REALs 2015-07-08 17:09:50 -05:00
Allen Byrne
7a72d82cda [svn-r27346] remove reference to file removed from cmake_ext_mod 2015-07-08 08:22:07 -05:00