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1724 Commits

Author SHA1 Message Date
Scot Breitenfeld
a21f1d8aef added missing files 2018-12-07 15:25:34 -06:00
Scot Breitenfeld
96b6f58ac8 Implemented VOL APIs and C constants, no tests 2018-12-07 12:06:29 -06:00
Scot Breitenfeld
5267454ebd Implemented VOL APIs and C constants, no tests 2018-12-07 12:00:47 -06:00
Scot Breitenfeld
1000e97d3a initial API impl. 2018-12-06 23:44:18 -06:00
M. Scot Breitenfeld
9bbaca66ca fixed sp. 2018-11-09 11:29:24 -06:00
M. Scot Breitenfeld
4fbd6bb8a5 HDFFV-10511 -- Make fortran specific subroutines names PRIVATE 
Made non-public APIs private.
 2018-11-09 11:24:42 -06:00
Allen Byrne
d69b541c20 TRILABS-34 add batch option. Also fix cmakedefine01 usage 2018-10-11 11:31:09 -05:00
Dana Robinson
e962df1591 VOL FEATURE 2018-10-10 08:10:15 -07:00
Allen Byrne
1cac34fc5b Fix defines for XL compiler 2018-10-03 16:39:50 -05:00
Dana Robinson
eb78fd8832 Develop normalization with vol_integration. 
Mostly peripheral things like the tools and wrappers,
with just enough core library code to support that.
 2018-09-18 22:57:37 -07:00
Larry Knox
d20fd310e4 Change prefix in example scripts to relative path to bin. This was done 
for 1.8, and works wherever installed without the need to replace the
original prefix.
 2018-08-23 07:37:00 -05:00
M. Scot Breitenfeld
fe325fb554 HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly 
misc. clean-up
 2018-06-08 14:45:23 -05:00
M. Scot Breitenfeld
e6aa306354 HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly 
added dependency on H5ff.F90 for H5_ff.F90
 2018-06-08 14:38:22 -05:00
M. Scot Breitenfeld
c52d04320b HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly 
h5fget_obj_count_f with H5F_OBJ_ALL_F counted objects created in h5open_f, which should not be included in the count. The function now returns the correct number of objects (i.e., objects created in h5open are not included in the total).
 2018-06-08 14:19:11 -05:00
Allen Byrne
df64de9eed Add fortran MPI to test and example 2018-06-06 13:44:56 -05:00
Allen Byrne
81300213e7 Add mpi include folders for fortran C objects 2018-06-06 11:16:02 -05:00
Vailin Choi
7a5fa418e3 Fix the error found after earlier checkin. 2018-05-31 19:05:58 -05:00
Vailin Choi
18fe60ae10 (1) Made the change according to the pull request feedback. 
(2) Removed the performance test form test/th5o.c: will decide on what needs to be done to show speedup via HDFFV-10463.
 2018-05-31 11:45:20 -05:00
Vailin Choi
584a810764 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop) 
* commit 'd184e6db94163dcc8761182744a6c524a4850887':
  Removed unused H5MF functions and updated FUNC_ENTER macros and naming in H5MFsection.c.
  Correct script names
  Fix typo
  Minor H5FS tweaks.
  Put back CTRL-L chars
  Update support link
  Update text
  Valgrind fixed by checking for prefix_len of 0
 2018-05-30 14:48:19 -05:00
Allen Byrne
2be5b1abd4 Fix typo 2018-05-24 09:22:19 -05:00
Vailin Choi
be2fc7dcd1 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop) 
* commit '2b0fb7e3f1f7da5b23d430702493ed4fb7f87166': (21 commits)
  HDFFV-9739 only executes H5E tests in production
  Remove link flag from compile command
  fix typo
  Add release note
  Correct attribute location
  HDFFV-9739 fix  copy testfiles command
  HDFFV-9739 remove obsolete test files
  HDFFV-9739 dup test file for concurrent tests
  HDFFV-9739 Fix autotools script
  HDFFV-9739 Change autotools test scripts
  Fix typo
  HDFFV-9739 Update test reference
  Update current windows test machines
  HDFFV-9739 Grab err number before API call
  HDFFV-9739 Add release note
  Adjust test names for concurrent tests
  Fix soversion
  HDFFV-9739 Fix copy name
  HDFFV-9739 factor out tests into separate JUnit
  Updated the threadsafety test to use error macros instead of asserts.
  ...
 2018-05-23 14:27:05 -05:00
Allen Byrne
7c4598cf74 Remove link flag from compile command 2018-05-22 15:48:34 -05:00
Vailin Choi
b178d80be0 Changes made based on feedback from pull request #1039. 2018-05-14 12:26:48 -05:00
Vailin Choi
ea66ac1e67 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop) 
* commit 'dcc66a4f157ace0858b788228550f3e104df3242': (35 commits)
  GGC requires attribute before function
  Correct COMPILE defs usage
  Add missing module_dir property
  Text cleanup
  Correct sentence punctuation.
  Add release note.
  Use set_property for MT flag
  Correct command usage
  Remove APPEND
  Fix typo
  Add missing test lib
  add missing folder to path
  Fix another command revert
  Missed a command revert
  Revert to old style for LINK_FLAGS gen expr not working
  LINK_FLAGS must be separate property sets
  Fix link flags syntax
  Revert refactor link flags
  refactor link flags to interface
  Refactor link flags
  ...
 2018-05-14 11:20:03 -05:00
Allen Byrne
4069936ee4 Add missing module_dir property 2018-05-09 08:44:45 -05:00
Allen Byrne
4c4042121c Use set_property for MT flag 2018-05-07 17:23:25 -05:00
Allen Byrne
424e2275bc Correct command usage 2018-05-07 16:08:42 -05:00
Allen Byrne
6fcf4c9aeb Remove APPEND 2018-05-03 15:41:50 -05:00
Allen Byrne
ab971fafdd Fix another command revert 2018-05-03 12:10:13 -05:00
Allen Byrne
866337babe Missed a command revert 2018-05-03 12:03:46 -05:00
Allen Byrne
1d1333ed6b Revert to old style for LINK_FLAGS gen expr not working 2018-05-03 11:57:30 -05:00
Allen Byrne
01a77cbfb1 LINK_FLAGS must be separate property sets 2018-05-03 10:44:57 -05:00
Allen Byrne
1ab0814a43 Fix link flags syntax 2018-05-03 09:28:54 -05:00
Allen Byrne
b73c0d2ab8 Revert refactor link flags 2018-05-02 16:33:35 -05:00
Allen Byrne
d906f2dcc5 refactor link flags to interface 2018-05-02 15:42:38 -05:00
Allen Byrne
d3a49988eb Refactor link flags 2018-05-02 15:15:13 -05:00
Allen Byrne
0c77fbaeb9 Fix defs and additional MSVC items 2018-05-02 13:52:02 -05:00
Allen Byrne
c6827191f9 TRILABS-19 fix syntax for windows 2018-05-02 12:19:30 -05:00
Allen Byrne
6dd91d206f TRILABS-19 Link flags need - character 2018-05-02 10:04:14 -05:00
Allen Byrne
6fb94eb3a3 TRILABS-19 fix fortran link flags 2018-04-30 09:56:27 -05:00
Allen Byrne
76d0cc0ca9 TRILABS-19 Refactor fortran properties 2018-04-30 09:03:29 -05:00
Allen Byrne
120195e5aa TRILABS-19 fix typos 2018-04-27 12:44:42 -05:00
Allen Byrne
2347bffaa2 TRILABS-19 remove add_defintions and use generator expressions 2018-04-26 16:41:04 -05:00
Allen Byrne
bc9a773b99 TRILABS-20 Fix fortran configure during fix of CXX configure 2018-04-24 17:22:55 -05:00
Vailin Choi
e6bc326ec0 Fix for HDFFV-10180 Performance issues with H5Oget_info. 2018-04-24 15:10:13 -05:00
Allen Byrne
6c82c49dd5 TRILABS-20 set a compiler name on all project commands 2018-04-20 10:11:55 -05:00
Allen Byrne
03e579f201 TRILABS-19 All c code INCLUDE_DIRECTORIES converted 2018-04-17 22:29:57 -05:00
Allen Byrne
46f2a2a432 TRILABS-19 Initial conversion of include_directories to targets 2018-04-17 15:57:58 -05:00
Allen Byrne
9cd4e23ce7 Merge pull request #1024 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop 
* commit '34e3e3ef17f29b721780941866a3ad4c261b7c05':
  Whitespace changes
  Whitespace and test reclassify
  Move two more functions from unit tests
  Reorder of tests for debug APIs option
  HDFFV-10444 fix soversion numbers for libraries
  Fix Java test for DEBUG_APIS
  Use var instead of absolute number
 2018-04-11 15:09:32 -05:00
M. Scot Breitenfeld
05ef85b02d fixed return integer type of C function 2018-04-10 10:54:31 -05:00
Allen Byrne
db3d744f25 HDFFV-10444 fix soversion numbers for libraries 2018-04-10 08:55:17 -05:00
Quincey Koziol
dae5e63cfb Revert some tangential code cleanups. 2018-03-23 12:43:57 -05:00
Quincey Koziol
f38864920d Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into merge_func_enter_vol 
Plus initial steps toward merging API context push into FUNC_ENTER_API* macros
 2018-03-18 18:36:49 -05:00
Quincey Koziol
4a17aff408 Add API context interface and use it throughout the library. 2018-03-15 16:54:30 -05:00
Allen Byrne
1651db0608 HDFFV-10418 adjust build commands to match main library build 2018-03-12 10:59:07 -05:00
Allen Byrne
24c62ba7fe Change CMake min to 3.10 2018-03-09 12:32:06 -06:00
Allen Byrne
b36bad53d9 Inc CMake min, Add new tests, rework test CMake files 2018-02-27 12:57:07 -06:00
Allen Byrne
d08f56e027 HDFFV-10345 whitespace corrections 2018-02-05 12:47:31 -06:00
Allen Byrne
f325002db9 HDFFV-10345 spelling errors 2018-02-05 12:38:20 -06:00
Allen Byrne
0866bc0bb8 HDFFV-10398 use the target name for custom commands 2018-01-30 12:29:51 -06:00
Allen Byrne
2f18da435e HDFFV-10398 use the simpler add_subdirectory signature 2018-01-30 12:21:01 -06:00
Allen Byrne
608a71200d HDFFV-10385 rename vars and macros 2018-01-19 10:49:17 -06:00
Allen Byrne
6ca95c512a HDFFV-10385 rework java names 2018-01-17 10:27:00 -06:00
Allen Byrne
a2f2e1f4cf Fix fortran cmake variable usage 2018-01-11 10:48:14 -06:00
Allen Byrne
c7e8a0788c Correct whitespace 2018-01-10 14:36:25 -06:00
Allen Byrne
9956b151e0 HDFFV-10385 multi-config builders need folder set 2018-01-10 14:35:00 -06:00
Allen Byrne
681047269b HDFFV-10385 fix packaging 2018-01-10 13:31:47 -06:00
Allen Byrne
82709178aa HDFFV-10385 includes cleanup 2018-01-10 09:52:06 -06:00
Allen Byrne
6bf125c7b3 HDFFV-10385 fix fortran references 2018-01-10 08:31:44 -06:00
Allen Byrne
16e0a6b858 Correct folder typo 2018-01-09 16:55:29 -06:00
Allen Byrne
3e0c6530dc HDFFV-10385 fix platform errors 2018-01-09 16:26:12 -06:00
Allen Byrne
be42e04791 HDFFV-10385 refactor CMAKE_BUILD_TYPE usage 2018-01-09 09:56:28 -06:00
M. Scot Breitenfeld
0065fd4b6d Fix -- HDFFV-10363 Fortran compilation fails for xlf and cmake builds 2017-12-19 16:47:31 -06:00
M. Scot Breitenfeld
6eab04894e HDFFV-10223 Shared libraries fail test on OSX with fortran enabled with cmake 
This is now fixed via the HDFFV-10325 fix.
 2017-12-07 08:56:04 -06:00
M. Scot Breitenfeld
701029876e removed duplicate exports of DS subroutines 2017-12-06 13:48:29 -06:00
M. Scot Breitenfeld
d37c9b1cb0 export var. 2017-11-29 16:34:20 -06:00
M. Scot Breitenfeld
d60ec508bc initialized integer constants 2017-11-29 15:24:27 -06:00
Allen Byrne
04f22540e2 Update macros 2017-11-29 10:27:00 -06:00
M. Scot Breitenfeld
858e6c3c9c HDFFV-10325: removed the COMMON/EQUIV statements. 2017-11-29 10:25:47 -06:00
Allen Byrne
addde7dcb8 Correct link lines of libraries 2017-11-14 15:07:26 -06:00
M. Scot Breitenfeld
b8cbd11dfb Fix for Intel 18 Fortran compilation error. 
HDFFV-10322
 2017-11-02 14:26:44 -05:00
Allen Byrne
47f4db394b Add missing dir reference 2017-11-02 10:54:43 -05:00
Allen Byrne
f190509675 Remove incorrect link var 2017-11-01 13:50:13 -05:00
Allen Byrne
f8fd6d0b41 Correct usage of MPI vars 2017-11-01 13:41:44 -05:00
Allen Byrne
930cfc402d Convert to use MPI:: for link 2017-11-01 12:29:53 -05:00
M. Scot Breitenfeld
be5257f876 libtool does not pass the correct argument linking (-WL,-WL,,) for the 
NAG Fortran compiler on Linux (other OSs have not been tested).
Therefore, detect if we are using the NAG Fortran compiler, and replace
the wl="-Wl," for Fortran to wl="-Wl,-WL,," in the libtool file. (HDFFV-10037)
 2017-07-27 11:32:21 -05:00
M. Scot Breitenfeld
b7f19967d7 Removed FCFLAGS when building the examples since they should already be included the h5fc wrapper. NAG complains about doubly declared options. 2017-07-27 08:52:21 -05:00
M. Scot Breitenfeld
1ccdb2e23f fixed check output string to match test 2017-06-09 12:19:50 -05:00
M. Scot Breitenfeld
2b2a1d605e Fix for shared fortran libraries on mac (HDFFV-2772). 2017-05-18 16:32:26 -05:00
Larry Knox
89fbe00dec Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to hdf5_1_10 
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
  Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
  Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
  Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
  Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
 2017-04-25 16:05:36 -05:00
M. Scot Breitenfeld
e3d8dacaad Combined the README_DEVEL and README, and removed out-dated README material 2017-04-11 12:18:49 -05:00
Quincey Koziol
0313cbb91d Final merge of page buffering branch to develop 2017-03-13 21:30:37 -07:00
Allen Byrne
2562ec3a4b Update CMake files and formatting 2017-03-01 14:47:53 -06:00
Allen Byrne
6cd6daf8f9 mpich module file is in env var 2017-02-24 15:50:51 -06:00
Allen Byrne
c37ecd5bba Add MPI_Fortran variables 2017-02-17 12:43:47 -06:00
Allen Byrne
d1292691c4 HDFFV-9875 enable static pdb and cleanup exports 2017-02-03 12:41:30 -06:00
Allen Byrne
177c050891 HDFFV-9875 Fix target exports and add static tools pdb files 2017-02-02 12:09:10 -06:00
Allen Byrne
556ff06975 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop) 
* commit 'bd85e57904f1f943774bb99ea5e8b0d074db0edb':
  tools/test/h5diff/testh5diff.sh.in:          Add code to delete copies of test .h5 files copied from          tools/testfiles/vds to tools/test/h5diff/testfiles when running          "make check" for an in-source build.
 2017-01-13 10:57:26 -06:00
lrknox
8452976de5 tools/test/h5diff/testh5diff.sh.in: 
Add code to delete copies of test .h5 files copied from
         tools/testfiles/vds to tools/test/h5diff/testfiles when running
         "make check" for an in-source build.

    tools/test/misc/testh5repart.sh.in:
         Change the name of the temporary test directory from "testfiles"
         which is also used for 2 h5mkgrp test files under source control to
         "testrepart" to avoid deleting source controlled files when running
         "make check" in the source directory.

    Fix test scripts that remove source-controlled files during "make check" when run in-source.
    Fix test scripts that don't remove test files because they add files to test directories but don't remove them if the build directories are the same as the source directory.

    Fix any test source file or Makefile.am files for tests that leave data files are removed by neither "make check" nor "make distclean".
 2017-01-12 22:20:11 -06:00
Allen Byrne
cdd4df5127 Fix test output file name 2017-01-12 12:24:10 -06:00
Allen Byrne
244faaa0d0 HDFFV-10094: upgrade cmake command conventions 
Also converted tests to use macros
 2017-01-11 14:02:34 -06:00
Allen Byrne
e1bcae8a6a Update cmake min version and cmake command convention 2017-01-10 17:10:03 -06:00
M. Scot Breitenfeld
a5c15d7b59 Enabled commented out code, 
HDFFV-9498 -- PGI COMPILER BUG: READ(...,pos,) fails for pgf90 causes offset test to fail
 2017-01-06 15:25:21 -06:00
Allen Byrne
789c1d081a Correct typo in variable format 2016-10-14 12:46:38 -05:00
M. Scot Breitenfeld
21b5e3132e Fix:HDFFV-9987 
With HDF5-1.10 you cannot specify default dataspace for Fortran (H5S_ALL_F)

Resolution:
 Made H5S_ALL_F INTEGER(HID_T) to match C.
 2016-10-14 12:02:02 -05:00
M. Scot Breitenfeld
fe5c359ce9 Removed unused H5T_NATIVE_INTEGER_# variables due to NAG fixes. 
HDFFV-9973
    Fortran library fails to compile and fails tests with NAG compiler
 2016-10-14 12:02:02 -05:00
Allen Byrne
3ee36553b9 Add support for namespace and add tools to binaries config 2016-10-14 11:22:22 -05:00
Allen Byrne
052ca6a741 Correct name and usage of cmake variable 2016-10-10 12:32:06 -05:00
M. Scot Breitenfeld
f9364c0080 removed the use of C_SIZEOF for non BIND(C) derived type 2016-10-03 13:26:39 -05:00
M. Scot Breitenfeld
e45ee9fa96 Fixed test to use storage_size instead of c_sizeof when available. 2016-09-29 14:52:26 -05:00
M. Scot Breitenfeld
678d116eeb Removed unused variables. 2016-09-29 12:56:07 -05:00
M. Scot Breitenfeld
9fbebbe6d7 Fixed: Fortran_DOUBLE was being set to C_LONG_DOUBLE when C_LONG_DOUBLE is not available. 2016-09-29 11:52:12 -05:00
M. Scot Breitenfeld
c28c6873fe Removed duplicate FCFLAG 2016-09-29 10:50:12 -05:00
M. Scot Breitenfeld
064073307a Removed duplicate FCFLAG. 2016-09-29 10:49:08 -05:00
M. Scot Breitenfeld
3befe647ee Added number of integer KINDs found to the header files. 2016-09-26 13:27:50 -05:00
M. Scot Breitenfeld
41b22417b7 Added path to source include files when building buidiface. 2016-09-26 12:08:18 -05:00
M. Scot Breitenfeld
7e5fcd3a4a Added rule to build buildiface program, without a rule, build would add repeated compile options when using the NAG compiler. 2016-09-26 11:49:06 -05:00
M. Scot Breitenfeld
3a89114ce5 Misc. cleaning up of the program. 2016-09-23 14:08:04 -05:00
M. Scot Breitenfeld
7cbf491e29 misc. format code-cleanup 2016-09-22 17:19:48 -05:00
M. Scot Breitenfeld
362233bd45 Code clean-up. 2016-09-22 15:22:11 -05:00
M. Scot Breitenfeld
8eb76e1f65 Merge branch 'develop' of ssh://bitbucket.hdfgroup.org:7999/~brtnfld/hdf5_msb into develop 2016-09-22 12:48:53 -05:00
M. Scot Breitenfeld
392b8ce3c9 HDFFV-9973 Fortran library fails to compile and fails tests with NAG compiler 
Fixes issues with KIND = BYTE assumptions.
 2016-09-22 12:02:02 -05:00
Allen Byrne
583af563d9 Add missing target depends command 2016-09-21 12:22:16 -05:00
Allen Byrne
bc1d833a80 Fix typo 2016-09-21 10:49:48 -05:00
Allen Byrne
e219ee88e4 Add gen file technique to HL and test fortran libraries 2016-09-21 10:46:03 -05:00
Allen Byrne
60adc706e6 Add WORKING_DIR to command 2016-09-20 17:03:40 -05:00
Allen Byrne
a3bd6e7aa4 Add target depends require separate folders 2016-09-20 16:57:42 -05:00
Allen Byrne
347501aba2 Add another source property 2016-09-20 15:41:07 -05:00
Allen Byrne
55fa38f3c9 Update generated files commands and properties 2016-09-20 15:27:26 -05:00
Allen Byrne
e9d582a034 Chage command proces to generate file before use. 2016-09-20 13:38:57 -05:00
Allen Byrne
c635d46311 Add missing command to set shared generated file 2016-09-19 10:20:49 -05:00
Allen Byrne
8efb84b9a8 Separate fortran generation into static and shared folders. 2016-09-16 15:21:43 -05:00
Scot Breitenfeld
a4e4094c76 [svn-r30259] Fixed: HDFFV-9965: HDF5 Fails to build when sizeof or c_sizeof is not available in Fortran 
Added the use of 'storage_size' if 'c_sizeof' is not available.

Tested (jelly, intel)
 2016-08-05 13:30:53 -05:00
Scot Breitenfeld
dd4744d3f6 [svn-r30089] fixed issue of CHARACTER argument of c_loc having a length of 1 2016-06-16 13:58:43 -05:00
Scot Breitenfeld
bdcb43071a [svn-r30087] fixed issue of CHARACTER argument of c_loc having a length of 1 2016-06-16 13:00:13 -05:00
Scot Breitenfeld
a82edeb89b [svn-r30085] changed from CHARACTER to CHARACTER(LEN=*), and moved the LEN of an optional argument into the optional check loop. 2016-06-16 11:54:45 -05:00
Scot Breitenfeld
0c2964383b [svn-r30078] Fixed -- HDFFV-9675 Removed unused variables in Fortran Library. 
Tested Jelly.
 2016-06-15 08:56:20 -05:00
Larry Knox
3b507bb8c4 [svn-r30058] Correct typo in compile scripts that causes dropping of filename in -o outfile. 
Addresses HDFFV-9530 and HDFFV-9938.
 2016-06-08 15:14:32 -05:00
Scot Breitenfeld
57121ebb3d [svn-r29952] merged change 29951 from 
https://svn.hdfgroup.uiuc.edu/hdf5/branches/hdf5_1_10_0/fortran/src

into trunk.
 2016-05-23 16:34:10 -05:00
Scot Breitenfeld
9b4603fc92 [svn-r29946] comment cleanup/reformatting 2016-05-18 09:14:56 -05:00
Scot Breitenfeld
61d18bbebe [svn-r29939] HDFFV-9917: compile time error with H5f90global.f90 
Fix:Made datatypes the same type and kind for both args to MAX().


Tested: jam (gnu)
 2016-05-16 08:13:20 -05:00
Allen Byrne
7b291f3531 [svn-r29866] Add files to clear test generated files tests. 2016-05-04 10:24:16 -05:00
Allen Byrne
74f3326a67 [svn-r29862] Convert source list names from *_SRCS to *_SOURCES. 
Add/convert most tools to use new HDF5_TOOLS_DIR instead of HDF5_TOOLS_SRC_DIR CMake VAR.
 2016-05-04 10:06:05 -05:00
Scot Breitenfeld
6b21276650 [svn-r29591] Changed buf variable in h5awrite_f from INOUT to IN 2016-03-29 09:46:58 -05:00
Larry Knox
f5234cd194 [svn-r29379] Add individual LT_VERS_* variables for wrapper libraries: c++, fortran, java, hl, hl/c++, hl/fortran to so that the shared object version numbers can be incremented independently. 
Disabled auto-increment of shared object version numbers by h5vers.

Files modified:
    config/lt_vers.am
    java/src/jni/Makefile.am
    hl/src/Makefile.am
    hl/c++/src/Makefile.am
    hl/fortran/src/Makefile.am
    c++/src/Makefile.am
    bin/h5vers
    fortran/src/Makefile.am
 2016-03-09 13:55:31 -05:00
Dana Robinson
1b7b09b081 [svn-r29337] Cleaning warnings in Fortran code. 
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
           autotools serial w/ Fortran
 2016-03-08 02:34:43 -05:00
Dana Robinson
a1035bd806 [svn-r29336] Removed unused variables from Fortran code. 
Updated gnu Fortran flags.

Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
           autotools serial w/ Fortran
 2016-03-08 01:38:33 -05:00
Allen Byrne
63249be0e1 [svn-r29226] HDFFV-9552: merge in java code. 2016-02-28 21:43:00 -05:00
Dana Robinson
19a8216bd5 [svn-r29182] Re-commit of HDFFV-8740 fix, which adds the ability to configure 
external dataset storage path behavior.

This check-in fixes a bug in the original check-in where the
external path stored in the file struct was not copied on reopen
causing subsequent dataset operations to fail.

Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
           autotools serial w/ fortran and C++
           autotools parallel (MPICH 3.1.4) w/ fortran
 2016-02-22 16:40:03 -05:00
Scot Breitenfeld
fe2b65f3e4 [svn-r29172] Fixed double word typo in #ifdef H5_FORTRAN_HAVE_C_SIZEOF 2016-02-19 16:12:32 -05:00
Scot Breitenfeld
553374e665 [svn-r29169] Changed #ifdef to use H5_FORTRAN_C_LONG_DOUBLE_IS_UNIQUE instead of H5_FORTRAN_HAVE_C_LONG_DOUBLE 
Tested: jam (gnu)
 2016-02-19 15:39:11 -05:00
Scot Breitenfeld
5126111606 [svn-r29165] Various rododoc fixes. Effects comments only. 2016-02-19 14:09:34 -05:00
Scot Breitenfeld
0859dd40bb [svn-r29163] changed robodoc specs to look for .F90 files 2016-02-19 13:11:26 -05:00
Scot Breitenfeld
f4430184ab [svn-r29162] added robodoc header information 2016-02-19 13:10:27 -05:00
Scot Breitenfeld
1b2c30753d [svn-r29155] HDFFV-9652: Add fortran wrappers/test for collective metadata functions 
Tested: h5committest.new
 2016-02-19 09:24:11 -05:00
Scot Breitenfeld
39fa385594 [svn-r29092] Fixed uninitialized return value from fortran API. 2016-02-11 16:50:22 -05:00
Scot Breitenfeld
745513e2b0 [svn-r29074] fixed integer type for H5Sget_simple_extent_ndims_f argument 2016-02-09 11:51:28 -05:00
Scot Breitenfeld
c418bc964d [svn-r29062] HDFFV-9564: Implement VDS Fortran wrappers. 
Tested: h5committest.new
 2016-02-08 09:01:29 -05:00
Scot Breitenfeld
8a60e4f1a4 [svn-r28936] spelling correction 2016-01-20 14:18:24 -05:00
Quincey Koziol
f60170dac7 [svn-r28761] Description: 
Clean up many mismatches between malloc/free and H5MM_malloc/H5MM_xfree
in the library and tests (and use of H5free_memory and H5Dvlen_reclaim).  Also
make H5Ocopy use a private version of H5Lexists, which doesn't internally
throw (and suppress) errors when an object (or the path to it) isn't found in
the destination.

Tested on:
    MacOSX/64 10.11.2 (amazon) w/serial & parallel
    (h5committest forthcoming)
 2016-01-01 01:28:04 -05:00
Dana Robinson
46aa3ded7c [svn-r28555] Normalization of Fortran directory with revise_chunks (minor). 
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
           serial, with and without the direct VFD enabled
 2015-12-09 22:56:33 -05:00
Scot Breitenfeld
8c789704da [svn-r28039] Fixed valgrind mem leak. 
Tested: h5committest (partial).
 2015-10-12 11:28:18 -05:00
Scot Breitenfeld
59c79aec2c [svn-r28020] Freed allocated memory in h5tenum_insert_ptr_c, valgrind fix. 2015-10-09 16:45:46 -05:00
Dana Robinson
944e42d5ea [svn-r27818] Minor warning fixes. 
Tested on: h5committest
 2015-09-17 12:21:34 -05:00
Allen Byrne
183ba43b41 [svn-r27796] Remove duplicated if block 2015-09-15 15:53:11 -05:00
Dana Robinson
058ec37559 [svn-r27795] Removed some autotools generated files that were not caught by 
the last checkin.

Tested on: bin/chkmanifest
 2015-09-15 15:52:14 -05:00
Dana Robinson
9af344117c [svn-r27794] Reintegration merge of features/autotools_rework branch with trunk 
NOTES:

- Developers will have to run autogen.sh before building with the autotools.

- autogen.sh takes the -p option to mimic the old bin/reconfigure behavior.

- The generated error, overflow and version headers have been left in place.

- The generated H5LT parser code has also been left in place.

- There are no changes for CMake users at this time.

Tested on: h5committest
 2015-09-15 15:38:57 -05:00
Dana Robinson
1177e64925 [svn-r27787] Merge of r27632-27674 from the trunk. 
Tested on: h5committest
 2015-09-15 08:01:01 -05:00
Quincey Koziol
1023374492 [svn-r27768] Description: 
Complete revamp of package initialization/shutdown mechanism in the library.
Each package now has a single init/term routine.

    This new way should avoid packages being re-initialized during library
shutdown and is also be _much_ more proactive about giving feedback for
resource leaks internal to the library.

    Introduces a new "module" header file for packages in the library
(e.g src/H5Fmodule.h) which sets up some necessary package configuration macros
for the FUNC_ENTER/LEAVE macros.  (The VFL drivers have their own slightly
modified version of this header, src/H5FDdrvr_module.h)

    Also cleaned up a bunch of resources leaks all across the library and tests,
along with addressing many warnings, as I encountered them.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & parallel
    Linux/64 3.10.x (kituo) w/serial & parallel
    Linux/64 2.6.x (ostrich) w/serial
 2015-09-13 22:58:59 -05:00
HDF Tester
f16361d5f1 [svn-r27767] Snapshot version 1.9 release 231 2015-09-13 19:43:47 -05:00
Allen Byrne
10da31a926 [svn-r27745] Merge trunk revision 27744 2015-09-10 09:11:17 -05:00
Allen Byrne
776b41a62a [svn-r27703] Publish both static and shared mod files in binaries. 
Tested: local linux
 2015-09-08 16:43:37 -05:00
HDF Tester
34be1d1aed [svn-r27690] Snapshot version 1.9 release 230 2015-09-06 19:31:40 -05:00
Dana Robinson
b106502c57 [svn-r27683] Restored the _POSIX_C_SOURCE flag that had been commented out 
and modified the fortran/test/ Makefile.am to remove the build
error with Intel Fortran.

Tested on: h5committest
 2015-09-05 17:56:59 -05:00
Allen Byrne
4906383c0f [svn-r27676] Fix dependencies of generated file 2015-09-04 08:55:29 -05:00
Allen Byrne
cbf5bb6b78 [svn-r27674] Attempt to fix race condition on windows 2015-09-03 16:45:17 -05:00
Scot Breitenfeld
33a2e52c6e [svn-r27663] Removed the lines: 
# Source files are used for both the library and fortranlib_test.
# Automake will complain about this without the following workaround.
fortranlib_test_FCFLAGS=$(AM_FCFLAGS)
fortranlib_test_CFLAGS=$(AM_CFLAGS)

because they caused Fortran build rules (.f90.o, .F90.o) to be ignored, causing the CPP flags to be passed to the Fortran compiler, causing the xlf compiler to fail.

Tested: ostrich (xlf), h5committest
 2015-09-02 11:33:12 -05:00
Allen Byrne
5d311b35ba [svn-r27661] Always use static mod files. 2015-09-01 16:43:50 -05:00
Allen Byrne
f72ed2d8dc [svn-r27648] Fortran executables depend on modules created by test library, add command to explictly enforce the building of the library before building executables. 2015-09-01 09:56:39 -05:00
Scot Breitenfeld
17f5ee3624 [svn-r27647] Added compiler check for PGI and CMake version. 
CMake must be > v3.3 to compile with PGI due to
CMake bug in earlier versions.
 2015-09-01 09:00:14 -05:00
Dana Robinson
59aa015d9f [svn-r27638] Merged r27500-27631 from trunk. 2015-08-31 23:36:17 -05:00
Scot Breitenfeld
e6f9fc5f7f [svn-r27625] Added preprocessor commands for PGI compiler. 
tested: h5committest
 2015-08-31 13:49:17 -05:00
HDF Tester
74792949c9 [svn-r27622] Snapshot version 1.9 release 229 2015-08-30 19:55:54 -05:00
Scot Breitenfeld
a9c28bac4e [svn-r27592] Added dll for H5DGET_OFFSET_F 2015-08-27 11:07:50 -05:00
Allen Byrne
6635d4c003 [svn-r27586] HDFFV-9497: Add back ALLOW_UNSUPPORTED OPTION. 
Added new option SKIP_HDF5_FORTRAN_SHARED
 2015-08-26 11:48:42 -05:00
Scot Breitenfeld
2faae30c8d [svn-r27585] disabled the test "test_userblock_offset"; it fails for unknown reasons on platypus with pgf90 compiler when reading the streamed file back. 2015-08-26 10:13:43 -05:00
Scot Breitenfeld
4939ee2419 [svn-r27580] Fix for: 
HDFFV-9283
Add H5Dget_offset fortran wrapper

tested: h5committest
 2015-08-25 16:49:36 -05:00
Dana Robinson
2e6100fb23 [svn-r27572] Removed VMS-specific code from the library. 
The only remaining code consists of a few floating-point tests
that rely on pre-generated and checked-in VMS files. These have
been left alone, even though they will not be possible to
recreate, since testing VMS float behavior is still important.

Tested on: h5committest
 2015-08-24 15:19:39 -05:00
Scot Breitenfeld
9d625c0580 [svn-r27556] Added include for build_mod directory. 
Tested: h5committest.
 2015-08-24 11:05:05 -05:00
HDF Tester
abdb2a6456 [svn-r27551] Snapshot version 1.9 release 228 2015-08-23 19:21:39 -05:00
Scot Breitenfeld
1436a07905 [svn-r27537] Added new FCCPPFLAGS to avoid passing CPPFLAGS to the fortran pre-processor compiler (This mainly causes issues with the xlf compilers) 
Tested: h5committest
 2015-08-20 11:01:26 -05:00
Scot Breitenfeld
8db36cc766 [svn-r27525] Added missing H5A_mp_H5AREAD_PTR and H5A_mp_H5AWRITE_PTR definitions. 2015-08-19 09:50:47 -05:00
Scot Breitenfeld
d06fee7bd2 [svn-r27517] Removed all perl scripts from configure. 
Tested: h5committest
 2015-08-17 16:12:03 -05:00
HDF Tester
68347a67ef [svn-r27511] Snapshot version 1.9 release 227 2015-08-16 21:58:42 -05:00
Dana Robinson
c27d180848 [svn-r27507] Merge of r27237-27500 from the trunk. 
Tested w/ h5committest

NOTES: - The manifest may still be messed up.
       - Cmake fails since the dual binary work needs to be merged with
         this repo's CMake externals.
 2015-08-14 14:58:54 -05:00
Scot Breitenfeld
d3e931c772 [svn-r27500] missing declaration 2015-08-12 14:53:03 -05:00
Scot Breitenfeld
91ec943123 [svn-r27499] Fixed FLOAT_128 H5T type detection. 
tested: jam
 2015-08-12 13:23:03 -05:00
Scot Breitenfeld
48c429d4a3 [svn-r27497] Fixed missing variable declarations. 
tested: h5committest.
 2015-08-12 12:13:12 -05:00
Scot Breitenfeld
caf0e7692a [svn-r27493] Trying again to merge the F2003_v1.10 branch to the trunk. 
Tested: h5committest --PASSED--
 2015-08-11 09:35:30 -05:00
Scot Breitenfeld
3b4696ccd1 [svn-r27489] reverted merge of branch 2015-08-10 20:22:33 -05:00