Commit Graph

13624 Commits

Author SHA1 Message Date
Allen Byrne
fb396557fc [svn-r23691] Fix valgrind leak by closing fapl
Tested: local linux
2013-05-09 09:56:18 -05:00
Raymond Lu
90ccb5c3c3 [svn-r23685] Issue 8380 H5Zunregister caused seg fault. I simplied the iteration process over datasets, groups, and files as Quincey suggested. I also removed H5I_search that I introduced in last commit but didn't actually used it.
Tested on jam and koala - simple change.
2013-05-08 11:36:58 -05:00
Raymond Lu
8ec42ced80 [svn-r23675] Issue 8380 - H5Zunregister caused seg fault. This is the followup commit. Quincey
reviewed my previous commit and suggested me to use H5I_iterate to iterate through
all opened objects in H5Z_unregister.  I changed it in this commit.

Tested with h5committest.
2013-05-06 15:51:26 -05:00
HDF Tester
8f3aee85de [svn-r23669] Snapshot version 1.9 release 150 2013-05-05 03:32:05 -05:00
Joel Plutchak
99e1300a0f [svn-r23668] Added fix report for Jira issue HDFFV-8247, and removed it from
the "Known Problem" section.
2013-05-03 14:23:50 -05:00
Joel Plutchak
30f904dbe9 [svn-r23667] Removed H5E call. 2013-05-03 10:39:44 -05:00
Joel Plutchak
62f6b579d0 [svn-r23666] Fix for fill value problem for chunked files with mixed allocated/unallocated chunks. 2013-05-02 14:20:14 -05:00
Joel Plutchak
7d205bba0a [svn-r23665] Added test cases to expose potential fill value issues. 2013-05-02 14:19:06 -05:00
Albert Cheng
7d0aded13a [svn-r23662] Bug fix: HDFFV-8236
Some files are not distributed when release tarball is created by bin/release
according to MANIFEST.  But --enable-build-all compiles them in test/.

Solution:
Distributed those missing files for now.  Need to resolve if these files
should be distributed or not.  And if not, fix --enable-build-all NOT to
compile them.

Tested: use bin/release to generate the tarball and run --enable-build-all with
it. Error is gone and all passed.
2013-05-02 07:50:08 -05:00
Raymond Lu
bada3f7a86 [svn-r23656] Issue 8380 H5Zunregister caused seg fault: I added some protection measures:
1. If any opened object uses the filter, let it fail.
  2. Flush all opened files to push any cached data to files.

Tested with h5committest.
2013-04-29 14:23:04 -05:00
Allen Byrne
029e143471 [svn-r23651] Add MPI configuration information to includes and libs 2013-04-29 10:12:47 -05:00
Allen Byrne
3c79c08dbe [svn-r23649] Correct file reference in pack list
Rename and update CMake docs.
2013-04-29 09:18:34 -05:00
HDF Tester
1f09e9d19e [svn-r23642] Snapshot version 1.9 release 149 2013-04-28 03:37:26 -05:00
Albert Cheng
613c5e8046 [svn-r23638] Removed INSTALL_MinGW because,
1. The file states that:
NOTE:
We are no longer actively supporting MinGW as of 1.8.5.
2. It is not tested for v1.8.11.
3. If we ever supports it again, it can be "restored" from previous
release (e.g. v1.8.10).)
2013-04-26 18:02:57 -05:00
Albert Cheng
357424423c [svn-r23618] Bug fix: HDFFV-8390
Threadsafe works in v1.8.10 release. But it fails v1.8.11-pre1 tarball in
configure stage now. There was a typo in the configure around the checking
of pthread library.  Fixed it.

Tested: AIX and also h5committested.
2013-04-24 13:27:04 -05:00
Allen Byrne
ed5a2bc1c1 [svn-r23614] Remove subfolders for includes 2013-04-23 12:50:15 -05:00
Albert Cheng
00648b6875 [svn-r23607] Purpose:
Daily test failed in koala with parallel and v16compat API from the previous
commit r22735.

Descriptoin:
    Changed to use H5Dopen2() instead of H5Dopen().

Tested: koala --enable-parallel --with-default-api-version=v16.
No h5committest test since this is limited to parallel test program.
2013-04-22 13:44:17 -05:00
Quincey Koziol
5acd9c4053 [svn-r23597] Description:
Bring r20683 from Coverity branch back to trunk:

Isues 1309-1333: Changed strcpy/strcat to strncpy/strncat with maximum size expected.

Tested on:
    Max OSX/64 10.8.3 (amazon) w/C++ & FORTRAN
2013-04-17 07:49:56 -05:00
Raymond Lu
e112a68bf8 [svn-r23590] I added SunOS 5.11 (emu) as a newly supported system. 2013-04-15 11:12:13 -05:00
Scot Breitenfeld
c61fb7260a [svn-r23585] changed the integer kind in the enum to satisfy g95.
Tested: jam (g95, gfortran)
2013-04-14 16:19:40 -05:00
Quincey Koziol
608559dead [svn-r23584] Description:
Update with new compiler warnings for gcc 4.8.x

Tested on:
    Mac OSX/64 10.8.3 (amazon) w/gcc 4.8.0
2013-04-13 18:18:05 -05:00
Raymond Lu
523675b2c1 [svn-r23580] I updated the compiler info, system info, and HDF5 support table of fred, emu, and ostrich.
No test is needed.
2013-04-12 14:48:07 -05:00
Scot Breitenfeld
337242feea [svn-r23576] added missing argument in check call.
tested: jam (g95,gcc))
2013-04-11 14:40:57 -05:00
Dana Robinson
dd577725d1 [svn-r23572] Removed inappropriate executable properties from a few files. These are
often added by Windows text editors.

Tested on: jam (just tested to make sure it builds - no code changes)
2013-04-10 11:49:28 -05:00
Raymond Lu
3e841b44be [svn-r23561] I added the info about dynamically loaded filter. 2013-04-08 11:22:00 -05:00
Albert Cheng
6b00c16d2a [svn-r23555] Bug fix: HDFFV-8358
The previous change set exec_prefix, libdir and includedir to actual values.
That removed the option for user to hand edit just the first prefix=...
to make "everything" to work.
Changed h5redeploy to do this by default:
## Installation directories:						  ##
## prefix	architecture-independent files.				  ##
## exec_prefix	architecture-dependent files, default is <prefix>.	  ##
## libdir	libraries, default is <exec_prefix>/lib.		  ##
## includedir	header files, default is <prefix/include>.		  ##
############################################################################
This allows users to just change the first line of prefix=<...> and the
effect will change libdir and includedir too.

This was also try to accommodate the -prefix option of h5XX. Unfortunately,
after changing h5redeploy, I found out the h5XX code to support -prefix
actually does not provide the stated efffect. This will be fixed in the
release.

Tested: h5committested plus hand test.
2013-04-05 13:29:46 -05:00
Joel Plutchak
a99e92e6a4 [svn-r23554] Added HDFFV-8247 to the Known Problems section. 2013-04-05 12:37:55 -05:00
Quincey Koziol
8277409a9b [svn-r23549] Description:
More misc. cleanups, but main change is to make an "extern" header file
for the plugin interface.

Tested on:
    Mac OSX/64 10.8.3 (amazon)
2013-04-04 15:57:59 -05:00
Allen Byrne
70e0f8e200 [svn-r23548] Fix typo in macro end macro
Warning only.
2013-04-04 11:35:22 -05:00
Allen Byrne
12616e370c [svn-r23547] Windows plugins will always be "dll"'s.
CMake also uses ";" as a separator - escape it

Tested: windows
2013-04-04 10:41:15 -05:00
Allen Byrne
a259cbdda7 [svn-r23546] Correct typo 2013-04-04 10:04:16 -05:00
Quincey Koziol
46342f6398 [svn-r23544] Description:
Correct API version mistake w/H5Acreate -> H5Acreate2

Tested on:
    Mac OSX/64 10.8.3 (amazon) w/parallel
2013-04-04 08:30:45 -05:00
Quincey Koziol
9ab7c47000 [svn-r23543] Description:
Bring r23542 from desy_1_8 branch to trunk:

    Further revisions to dynamic library loading code, to clean it up.

Tested on:
    Mac OSX/64 10.8.3 (amazon) w/parallel
2013-04-04 08:29:14 -05:00
Raymond Lu
68b0945687 [svn-r23540] I took out the "const" symbol from H5PL_get_plugin_type and H5PL_get_plugin_info functions.
Tested on jam - simple change.
2013-04-03 15:53:13 -05:00
Allen Byrne
f2e9f4e8c6 [svn-r23538] Correct incorrect unset var name 2013-04-03 15:47:37 -05:00
Raymond Lu
86c0d2aa05 [svn-r23536] I corrected the copyright information and added some comment in H5Pocpl.c.
Tested on jam - no code change.
2013-04-03 14:15:13 -05:00
Raymond Lu
97caaff719 [svn-r23533] I changed the operation in dynlib2.c from math operations pow and sqrt to simpler multiplication and division
to avoid potential rounding problem in math operations.

Tested on jam - simple change.
2013-04-03 11:30:46 -05:00
Allen Byrne
f03301ce82 [svn-r23530] Moved test property into test macro.
Tested: local linux
2013-04-03 10:08:52 -05:00
Quincey Koziol
b4331b2ff3 [svn-r23529] Description:
Stop aliasing property to indicate internal collective metadata operations
with property to perform collective raw data operations from the application.

Tested on:
    Mac OSX/64 10.8.3 (amazon) w/paralllel
2013-04-02 21:50:50 -05:00
Larry Knox
0b16cecb99 [svn-r23527] Revised usage to reflect change to use -shlib as default when no static libraries were built.
No test - text only revision of compile scripts.
2013-04-02 17:54:20 -05:00
Albert Cheng
7ee9828c26 [svn-r23526] Bug fix: Mac system has dynamic library name in the form of libxyz.dylib. Changed test_plugin.in
to copy library file names in the form of libdynlib{123].*.

Another problem: Even when copy failed in copying the libray files (was in the form of *.so*),
the test still passed.  That was because .libs was included in $HDF5_PLUGIN_PATH and the needed
plug in libraries were generated there.
Fixed by copying the plug in library files to separate directories and seetup HDF5_PLUGIN_PATH
to include them but NOT .libs.

Tested: used desycommittest (duck, emu, jam, koala, ostrich) plus cmakehdf5 in jam.
The cmakehdf5 in jam reported a failure in 
Test #594: H5REPART-h5repart_test ....................................***Failed
Since this failure could not be caused by my change in test_plugin.sh, I reported it to Allen
and proceed to check this in.
2013-04-02 16:26:14 -05:00
Allen Byrne
26785f6af5 [svn-r23524] Use two plugin folders for testing plugin Path 2013-04-02 14:12:06 -05:00
Allen Byrne
91831f41ad [svn-r23520] Add new plugin library to build list for test.
Tested: local linux, windows
2013-04-02 11:27:46 -05:00
Raymond Lu
b8c258a970 [svn-r23519] I used H5Gcreate instead of H5Gcreate2 in plugin.c. I corrected it and added some real operation in the dummy filter library dynlib3.c.
Tested on jam and koala.
2013-04-02 11:12:20 -05:00
Albert Cheng
fc4c7a05f6 [svn-r23517] Rewrirte part of the script that copy the libdynlib libraries and check
for result.

h5committested. (Cmake in Duck has errors but the error are not related to
this change.
2013-04-02 00:07:20 -05:00
Scot Breitenfeld
1b6963230b [svn-r23516] Updated documentation. 2013-04-01 19:58:44 -05:00
Raymond Lu
46b63fe7d8 [svn-r23515] I added test/dynlib3.c. 2013-04-01 18:38:40 -05:00
Raymond Lu
075334af96 [svn-r23514] I forgot to add the new file dynlib3.c in last commit. 2013-04-01 18:30:08 -05:00
Raymond Lu
72e84fcd82 [svn-r23513] I added a test case in plugin.c for testing using filter for groups and created a dummy filter library for this test case.
Tested on jam and koala.
2013-04-01 18:28:48 -05:00
Larry Knox
e679eed61b [svn-r23511] Replaced install-data-local with install-exec-hook in test/Makefile.am.
tested with h5committest
2013-04-01 17:45:02 -05:00