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2727 Commits

Author SHA1 Message Date
Dana Robinson
73bd8b7c2f Fixed format_convert and fortran files (bad merge?). 2016-09-19 13:51:38 -04:00
Dana Robinson
7f817fea7c Merge branch 'develop' into evict_on_close 2016-09-14 17:02:43 -04:00
Allen Byrne
203b2b2e75 Windows returns -1 instaed of 255 as on linux for the test 2016-08-30 10:27:07 -05:00
Allen Byrne
b947f7e911 [svn-r30321] HDFFV-9974: Correct parsing of UD filter parameters. 
Verified by user, who reported issue.
 2016-08-25 13:57:27 -05:00
Vailin Choi
169014d154 [svn-r30319] Fix for daily test failure on emu -m64 for the checkin #30310. 
Tested on emu (-m64 & -m32), platypus, mayll, moohan, osx1010test, quail, kituo, ostrich, kite.
 2016-08-24 15:12:18 -05:00
Allen Byrne
42d55a0f7d [svn-r30318] whitespace cleanup 2016-08-24 14:50:39 -05:00
Allen Byrne
2d6dd8ea64 [svn-r30317] Whitespace cleanup 2016-08-24 14:47:56 -05:00
Vailin Choi
ae18cf66d8 [svn-r30310] Fix daily test failure for previous checkin #30308. 
Tested on platypus and mayll.
 2016-08-21 19:21:20 -05:00
Vailin Choi
c8af99f530 [svn-r30308] Fix for HDFFV-7991--error when copying dataset with attribute which is a compound datatype consisting of 
a variable length string.
Tested on mayll, platypus, osx1010test, emu, kituo, kite, quail, moohan, ostrich.
 2016-08-19 15:58:16 -05:00
Quincey Koziol
f40381b0ea [svn-r30285] Description: 
More warning cleanups, bringing the build down to 25 unique types of
warnings, with 550 warnings in 122 files (down from 28, 770, and 134).

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial & parallel
    (h5committest forthcoming)
 2016-08-13 04:23:53 -05:00
Allen Byrne
bac4cf8e92 [svn-r30238] Follow-on to HDFFV-9928: remove unconditional call of time.h type headers. Also remove duplicated includes when h5private.h is used. 2016-08-01 12:38:34 -05:00
Allen Byrne
e55844b752 [svn-r30237] HDFFV-9939: Change cmake commands to reduce POST_BUILD custom commands. Fixes possible overruns on windows command lines. 2016-08-01 12:35:00 -05:00
Allen Byrne
1494413413 [svn-r30236] HDFFV-9928: remove duplicate and unconditional includes in h5diff_array. 
Also format function block in h5diff_attr to eliminate excessive whitespace
 2016-08-01 12:26:41 -05:00
Allen Byrne
4ce65b8585 [svn-r30235] HDFFV-9730: Fix functions for delete to use a specific dir instead of a possibly uninitialized variable. 2016-08-01 12:20:21 -05:00
Allen Byrne
db7a701126 [svn-r30232] HDFFV-9953, -9955: Add new testfiles to h5dump generator and tests. 2016-08-01 12:03:56 -05:00
Quincey Koziol
4af66b09e0 [svn-r30219] Description: 
More warning cleaups: down to 770 warnings (from ~940) in 134 files (from
148), with 28 unique kinds of warnings (from 31).

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial & parallel
    (h5committest forthcoming)
 2016-07-22 17:43:18 -05:00
Allen Byrne
a71f9dd1e4 [svn-r30194] Convert usage function to use standard tools macros. 2016-07-18 11:46:43 -05:00
Allen Byrne
dd0eaf951f [svn-r30192] Correct random code inserted in usage text. 2016-07-18 09:12:34 -05:00
Quincey Koziol
bb19817c9f [svn-r30189] Description: 
Clean up more warnings: drop the warning count from ~1310 down to ~940,
with only 31 types of warnings in 148 files (down from 38 types in 167 files).

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial & parallel
    (h5committest forthcoming)
 2016-07-17 19:18:42 -05:00
Quincey Koziol
2677879995 [svn-r30161] Description: 
Switch from atoll to strtoull, to make VS2012 happy.

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial & parallel
    (h5committest forthcoming)
 2016-07-07 16:38:35 -05:00
Dana Robinson
c15d93826b [svn-r30118] Sync with trunk. 2016-06-29 10:13:20 -05:00
Quincey Koziol
83724bd787 [svn-r30113] Description: 
Clean up warnings (from 2774 -> 1560, with my standard debug build)

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
 2016-06-28 16:53:48 -05:00
Quincey Koziol
f410d5d842 [svn-r30095] Description: 
Bring over fixes for CMake testing from the revise_chunks branch

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
 2016-06-19 03:48:44 -05:00
Quincey Koziol
d3396a7953 [svn-r30075] Description: 
Bring object/dataset/group/named datatype features from revise_chunks
branch to trunk.  Also CMake support for h5format_convert and a bunch of
misc. cleanups.

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
 2016-06-14 18:07:03 -05:00
Larry Knox
3b507bb8c4 [svn-r30058] Correct typo in compile scripts that causes dropping of filename in -o outfile. 
Addresses HDFFV-9530 and HDFFV-9938.
 2016-06-08 15:14:32 -05:00
Quincey Koziol
03dafc5ebe [svn-r30020] Description: 
Bring r29992 from revise_chunks branch to trunk:

Turn off error reporting for h5debug and hdf2gif.

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial, parallel & produciton
    (h5committest forthcoming)
 2016-06-05 21:30:16 -05:00
Quincey Koziol
a6303ce04c [svn-r29975] Description: 
Bring r29909 from revise_chunks to trunk:

Cleaned up "conflicts with C++ keyword" warnings.

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
 2016-05-30 01:18:56 -05:00
Quincey Koziol
bf566b775b [svn-r29969] Description: 
Bring r29934 from revise_chunks branch to trunk:

(1) Fix for HDFFV-9434: throw an error instead of assertion when v1 btree level hits the 1 byte limit.
(2) Modifications to better handle error recovery when conversion by h5format_convert fails.

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
 2016-05-29 05:57:47 -05:00
Dana Robinson
741f836b98 [svn-r29956] Removed tools/h5format_convert/Makefile.in. 2016-05-24 09:22:30 -05:00
Quincey Koziol
18ad868b23 [svn-r29924] Description: 
Bring h5format_convert tool from revise_chunks branch to trunk.

Tested on:
    MacoSX/64 10.11.4 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
 2016-05-12 15:47:03 -05:00
Allen Byrne
a5b595e020 [svn-r29889] HDFFV-9775: Add enable-error-stack to tools lib and refactor h5repack error handling. 2016-05-04 13:15:57 -05:00
Allen Byrne
5497968dfe [svn-r29887] Add missing testfiles for h5repack 2016-05-04 12:53:49 -05:00
Allen Byrne
3764d69e9e [svn-r29885] Fix memory leak when one dataset is vlen. 2016-05-04 11:39:28 -05:00
Allen Byrne
2f1b517021 [svn-r29884] VDS correction for get_space_status, with test change. 
Add new files for repack tests.
Add repack tests for VDS files.
 2016-05-04 11:38:08 -05:00
Allen Byrne
f962c3d963 [svn-r29883] Convert import test script to standard used by other test scripts. 2016-05-04 11:35:59 -05:00
Allen Byrne
5e94747c52 [svn-r29881] Add include guards. 
Remove unnecessary includes.
 2016-05-04 11:18:11 -05:00
Allen Byrne
792f902854 [svn-r29868] Add/convert most tools to use new HDF5_TOOLS_DIR instead of HDF5_TOOLS_SRC_DIR CMake VAR. 2016-05-04 10:30:30 -05:00
Allen Byrne
8bd70914fc [svn-r29867] CMake whitespace cleanup 2016-05-04 10:29:16 -05:00
Allen Byrne
74f3326a67 [svn-r29862] Convert source list names from *_SRCS to *_SOURCES. 
Add/convert most tools to use new HDF5_TOOLS_DIR instead of HDF5_TOOLS_SRC_DIR CMake VAR.
 2016-05-04 10:06:05 -05:00
Quincey Koziol
4f831405cb [svn-r29779] Description: 
Bring over some of the tool testing for the new chunk indices.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
 2016-04-24 03:21:09 -05:00
Scot Breitenfeld
988c33527f [svn-r29745] HDFFV-9767 
h5perf output; should be MB not MBs

FIX: changed output text from MBs to MB and KBs to KB
 2016-04-19 10:00:53 -05:00
Quincey Koziol
be24e91aec [svn-r29714] Description: 
Switch to use internal DXPL ID, to align with recent changes within the
library.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial & parallel
    (Too minor to require h5committest)
 2016-04-16 03:36:47 -05:00
Allen Byrne
18e360b9fa [svn-r29683] HDFFV-1956: h5diff will warn if a dataset is virtual instead of failing. h5diff does not consider the layout type when comparing datasets. 
SKIP h5repack VDS tests until h5repack is fixed.
remove h5repack fix ddl files needed when h5repack VDS fix is implemented.
 2016-04-11 09:21:37 -05:00
Allen Byrne
0ff3a85a48 [svn-r29681] HDFFV-1956: h5diff will warn if a dataset is virtual instead of failing. h5diff does not consider the layout type when comparing datasets. 
SKIP h5repack VDS tests until h5repack is fixed.
Additional tests to be skipped
 2016-04-11 08:53:55 -05:00
Allen Byrne
7fe0324fc4 [svn-r29680] HDFFV-1956: h5diff will warn if a dataset is virtual instead of failing. h5diff does not consider the layout type when comparing datasets. 
SKIP h5repack VDS tests until h5repack is fixed.
 2016-04-11 08:45:33 -05:00
Larry Knox
921b68afa7 [svn-r29678] Revert r29672 changes to h5diff. 
Tested h5committest.new
 2016-04-09 13:48:43 -05:00
Allen Byrne
1a5ee65d50 [svn-r29672] HDFFV-1956: h5diff will warn if a dataset is virtual instead of failing. h5diff does not consider the layout type when comparing datasets. 2016-04-08 12:43:59 -05:00
Dana Robinson
305d218725 [svn-r29665] Added new chunk index types to h5debug. 
Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1
           Autotools serial
 2016-04-07 15:31:17 -05:00
Allen Byrne
8e41b14811 [svn-r29601] Cleanup case of CMake commands in tools. 
Update CTestCustom file for new tests.
Add connection from HDF5_ENABLE_USING_MEMCHECKER cmake option to library define USING_MEMCHECKER.
 2016-03-31 09:02:24 -05:00
Dana Robinson
8ed8520c19 [svn-r29537] Added "latest format" tests to h5copy and h5repack from revise_chunks. 
Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1
           autotools serial
           cmake serial
 2016-03-23 14:32:59 -05:00