Commit Graph

509 Commits

Author SHA1 Message Date
hdftest
b193bc11c9 Revert "Merge pull request #1116 in HDFFV/hdf5 from ~HDFTEST/hdf5_hft:hdf5_1_10 to develop"
This reverts commit e9f476dad4, reversing
changes made to 2ff00b1b93.
2018-06-24 18:04:23 -05:00
hdftest
25f80cbbec Snapshot version 1.10 release 3 (snap3) 2018-06-24 17:35:05 -05:00
hdftest
67d6f8d405 Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)
* commit '87829e06189cd9b29583b5ca8065b52b1f4cd523': (30 commits)
  HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
  HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
  HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
  Cleaned up H5Fmount/unmount code.
  Normalization with vol_integration branch.
  Add fortran MPI to test and example
  Add mpi include folders for fortran C objects
  Normalization with the vol_integration branch.
  Fixed MANIFEST
  Fix usage of compression lib in shared tests
  Fix jni function call version
  Fix the error found after earlier checkin.
  H5O_info fixes for java and examples
  Added a RELASE.txt entry for HDFFV-10505.
  Changed 'deprecated' to indicate 'no longer supported' in the --enable-debug/production configure flags.
  (1) Made the change according to the pull request feedback. (2) Removed the performance test form test/th5o.c: will decide on what needs to be done to show speedup via HDFFV-10463.
  Normalize with vol_integration.
  Removed unused H5MF functions and updated FUNC_ENTER macros and naming in H5MFsection.c.
  Restored some unused #defines to the deprecated section of H5Dpublic.h.
  Changes made based on feedback from pull request #1039.
  ...
2018-06-16 17:47:39 -05:00
Scot Breitenfeld
87829e0618 Merge pull request #1111 in HDFFV/hdf5 from hdf5_1_10.sync to hdf5_1_10
* commit '57f64b92d19fed2879ee9bafe1d29bfac865d54c': (30 commits)
  HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
  HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
  HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
  Cleaned up H5Fmount/unmount code.
  Normalization with vol_integration branch.
  Add fortran MPI to test and example
  Add mpi include folders for fortran C objects
  Normalization with the vol_integration branch.
  Fixed MANIFEST
  Fix usage of compression lib in shared tests
  Fix jni function call version
  Fix the error found after earlier checkin.
  H5O_info fixes for java and examples
  Added a RELASE.txt entry for HDFFV-10505.
  Changed 'deprecated' to indicate 'no longer supported' in the --enable-debug/production configure flags.
  (1) Made the change according to the pull request feedback. (2) Removed the performance test form test/th5o.c: will decide on what needs to be done to show speedup via HDFFV-10463.
  Normalize with vol_integration.
  Removed unused H5MF functions and updated FUNC_ENTER macros and naming in H5MFsection.c.
  Restored some unused #defines to the deprecated section of H5Dpublic.h.
  Changes made based on feedback from pull request #1039.
  ...
2018-06-15 13:53:36 -05:00
M. Scot Breitenfeld
f484649347 Merge branch 'develop' into hdf5_1_10.sync 2018-06-04 14:41:12 -05:00
hdftest
afe28b7607 Snapshot version 1.10 release 3 (snap2) 2018-06-03 21:53:30 -05:00
Dana Robinson
890203482a Changed 'deprecated' to indicate 'no longer supported' in the
--enable-debug/production configure flags.
2018-05-31 13:17:18 -07:00
hdftest
f8690c40b9 Updated version to 1.10.3-snap2 2018-05-29 15:16:31 -05:00
M. Scot Breitenfeld
b69bd0771e Merge branch 'develop' into hdf5_1_10.sync 2018-05-08 17:17:45 -05:00
hdftest
0c91e6b922 Updated version to 1.10.3-snap1 2018-04-30 08:16:49 -05:00
Quincey Koziol
62b4200f58 Remove vestiges of H5_DEBUG_BUILD macro, switching it to the more
standard H5CX_DEBUG form.
2018-04-06 17:19:29 -05:00
lrknox
aa199c893f Updated version to 1.10.3-snap0 2018-03-14 16:19:26 -05:00
hdftest
fa3a845d49 Snapshot version 1.10 release 2 (snap9) 2018-02-11 15:54:22 -06:00
lrknox
1bc7dc396a Correct AM_MAINTAINER_MODE default to 'enable'. 2018-01-31 14:20:41 -06:00
hdftest
9b059d7b28 Snapshot version 1.10 release 2 (snap8) 2018-01-07 22:34:20 -06:00
hdftest
bee148a995 Snapshot version 1.11 release 2 2018-01-05 10:09:10 -06:00
hdftest
d01ad2a94a Snapshot version 1.11 release 1 2018-01-05 08:50:10 -06:00
hdftest
2f7e94c9c0 Snapshot version 1.10 release 2 (snap7) 2017-12-31 10:42:57 -06:00
hdftest
98bf60f722 Snapshot version 1.10 release 2 (snap6) 2017-12-24 15:28:56 -06:00
hdftest
36b9818ecc Snapshot version 1.10 release 2 (snap5) 2017-12-17 15:33:36 -06:00
hdftest
ad85e417cf Snapshot version 1.10 release 2 (snap4) 2017-12-11 08:58:41 -06:00
M. Scot Breitenfeld
8d462d5102 Merge branch 'develop' into hdf5_1_10 2017-11-28 11:42:45 -06:00
hdftest
9dd1abc0d8 Snapshot version 1.10 release 2 (snap3) 2017-11-20 10:40:33 -06:00
Dana Robinson
cb235453a9 Changed ar to always use -cr instead of the autotools default
of cru.
2017-11-15 14:24:59 -08:00
Dana Robinson
a25366cc98 Fixed that annoying ar warning about -u being ignored. 2017-11-12 23:22:39 -08:00
Dana Robinson
00ade113c5 Plugin test rework
Cleanup of plugin test code. Renames many files. Prep for VOL branch merge.
2017-11-08 17:52:44 -08:00
M. Scot Breitenfeld
59e7c7703e Merge branch 'develop' into hdf5_1_10 2017-10-26 10:13:33 -05:00
M. Scot Breitenfeld
26ae202faa HDFFV-10037: fixed wrong C link flags 2017-10-25 10:32:33 -05:00
HDF Tester
260dcebc09 Merge branch 'hdf5_1_10' of ssh://bitbucket.hdfgroup.org:7999/~hdftest/hdf5_hft into hdf5_1_10 2017-10-16 16:58:07 -05:00
HDF Tester
b80fe75b7f Snapshot version 1.10 release 2 (snap2) 2017-10-16 16:50:31 -05:00
Larry Knox
a6fdf1bb0e Merge pull request #703 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
* commit '4a3998ac308c2bf24201e470c0b23f7f83f063e1':
  Correct indentation in h5diff/Makefile.am.
  Add "-rpath /nowhere" to *_la_LDFLAGS for plugin test libraries. This allows them to be successfully linked but not installed.  The change was added for the HDF5 1.8.20 release, but is also needed for all other HDF5 branches.
2017-10-16 15:45:14 -05:00
lrknox
726d7d3af5 Add "-rpath /nowhere" to *_la_LDFLAGS for plugin test libraries. This
allows them to be successfully linked but not installed.  The change was
added for the HDF5 1.8.20 release, but is also needed for all other HDF5
branches.
2017-10-09 15:33:09 -05:00
Allen Byrne
da75ed371f Update configure 2017-09-20 14:39:08 -05:00
Allen Byrne
758ce30a94 Update configure 2017-09-20 14:38:00 -05:00
hdftest
1015828c1f Snapshot version 1.10 release 2 (snap1) 2017-08-08 23:31:21 -05:00
hdftest
d3b8037137 Snapshot 1.10.2-snap1
(Committed 8/1/2017 but not pushed from fork)
2017-08-04 15:49:04 -05:00
M. Scot Breitenfeld
2a1e499b01 changed comments, (HDFFV-10037) 2017-08-03 09:20:05 -05:00
M. Scot Breitenfeld
2332135332 changed the test for NAG fortran compiler, (HDFFV-10037) 2017-08-03 09:17:24 -05:00
M. Scot Breitenfeld
2d932366b2 added test for NAG compiler and use the FC_BASENAME for NAG detection, (HDFFV-10037) 2017-08-01 15:33:43 -05:00
M. Scot Breitenfeld
c08ee77858 Rearranged where the substitution occurs.
libtool does not pass the correct argument linking (-WL,-WL,,) for the
    NAG Fortran compiler on Linux (other OSs have not been tested).
    Therefore, detect if we are using the NAG Fortran compiler, and replace
    the wl="-Wl," for Fortran to wl="-Wl,-WL,," in the libtool file. (HDFFV-10037)
2017-07-28 09:05:39 -05:00
M. Scot Breitenfeld
92491aa4b6 added chmod 755 for h5fc 2017-07-27 13:09:36 -05:00
M. Scot Breitenfeld
d138f164dd removed chmod 755 for h5fc 2017-07-27 12:57:48 -05:00
M. Scot Breitenfeld
be5257f876 libtool does not pass the correct argument linking (-WL,-WL,,) for the
NAG Fortran compiler on Linux (other OSs have not been tested).
Therefore, detect if we are using the NAG Fortran compiler, and replace
the wl="-Wl," for Fortran to wl="-Wl,-WL,," in the libtool file. (HDFFV-10037)
2017-07-27 11:32:21 -05:00
Dana Robinson
63647cd363 Merge of recent develop work to 1.10 branch.
Fixes for:
* HDFFV-10247 (autotools Fortran long double bug)
* HDFFV-10248 (autotools deprecated debug/production tweak)
* HDFFV-10250 (-fno-omit-frame-pointer w/ symbols)
* Disabled missing parameter warnings in Java constant code
* Added H5I_VFL ID checks to tmisc.c
* Added 'get a dummy VFD' call to h5test library
2017-07-05 11:35:03 -07:00
Vailin Choi
5262b98b34 Merge pull request #586 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to develop
* commit '804a88fafdca3d6a76312ab01ac4d6d5b103e9dc':
  Fix for HDFFV-10160 Modifications to fix the assertion/abort failure when the application does not close the file.
2017-06-30 02:55:45 -05:00
Dana Robinson
95bbd396ff Removed compiler flag cleanup since Solaris chokes on it. 2017-06-29 15:45:36 -05:00
Dana Robinson
598856b37e Merge pull request #585 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:configure_fortran_long_double_bug to develop
* commit '8c347d794a06b8b57c407499e1a441cc0f415380':
  Fixed a bug in autotools Fortran processing where a test for the presence of a C long double type always returned true.
2017-06-29 09:23:35 -05:00
Vailin Choi
804a88fafd Fix for HDFFV-10160
Modifications to fix the assertion/abort failure when the application does not close the file.
2017-06-29 01:11:44 -05:00
Dana Robinson
8c347d794a Fixed a bug in autotools Fortran processing where a test for the
presence of a C long double type always returned true.
2017-06-28 17:30:45 -07:00
Dana Robinson
cbca178410 Updated the --enable-debug/production handling in configure.ac
so that it more reliably indicates that the configure option
can no longer be used. Previously, using --enable-debug="", etc.
would not trigger an error (even though such usage is unlikely).
2017-06-28 16:49:58 -07:00
Dana Robinson
373de3f95f Added awk processing to remove extraneous whitespace from H5_
flags in configure.
2017-06-28 16:36:26 -07:00
Dana Robinson
d85aeb7704 Fixed a comment in configure.ac 2017-06-27 14:35:16 -04:00
M. Scot Breitenfeld
69ccaee00a add documention comments for shared Fortran Fix on OSX 2017-05-23 09:53:59 -05:00
M. Scot Breitenfeld
6301d5a6cb Fix for shared fortran libraries on mac (HDFFV-2772). 2017-05-22 16:03:56 -05:00
M. Scot Breitenfeld
97ac37592b Fix for shared fortran libraries on mac (HDFFV-2772). 2017-05-22 15:45:17 -05:00
M. Scot Breitenfeld
2b2a1d605e Fix for shared fortran libraries on mac (HDFFV-2772). 2017-05-18 16:32:26 -05:00
Larry Knox
89fbe00dec Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to hdf5_1_10
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
  Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
  Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
  Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
  Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
2017-04-25 16:05:36 -05:00
lrknox
25ec07450a Change copyright headers to replace url referring to file to be removed
and replace it with new url for COPYING file.

Fix 2 lines in java error test expected output file where messages
include line numbers changed by reducing the copyright header by 2
lines.
2017-04-14 11:54:16 -05:00
lrknox
972344e231 Merge bin/h5vers changes from develop.
Pull version from configure for version test in h5repack_plugin.sh.in
Update version to 1.10.2-snap0 for hdf5_1_10 branch.
2017-03-23 20:03:27 -05:00
lrknox
cd8ec2cc44 Extend h5vers to update version strings in java files and h5repack
version test expected output file.

Update version on develop branch to 1.11.0.

 Please enter the commit message for your changes. Lines starting
2017-03-20 17:14:16 -05:00
lrknox
41a54b4fab Merge branch 'hdf5_1_10' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into hdf5_1_10 2017-03-20 16:45:10 -05:00
lrknox
12425a62a6 set initial version for HDF5 1.10.1. 2017-03-17 12:43:50 -05:00
Allen Byrne
24b11709af Update cmake pubconf to match autotools and add strtoll checks 2017-03-16 12:59:20 -05:00
M. Scot Breitenfeld
d297ee6e82 updated AM_SILENT_RULES syntax 2017-03-09 09:54:19 -06:00
M. Scot Breitenfeld
ed37cbfd2e Added a check for AM_SILENT_RULES before enabling it. 2017-03-08 16:21:24 -06:00
Dana Robinson
2cac1c0637 Moved remaining SWMR-related test files to develop. 2017-01-26 14:34:12 -05:00
Allen Byrne
e4b314c47c Fix indentation 2017-01-18 11:10:56 -06:00
Allen Byrne
a8e4f6426e Add autotools version of plugin tests for UD filters 2017-01-17 17:11:27 -06:00
Dana Robinson
e6a12a3fea Added an --enable-developer-warnings option to configure so
users can ignore -Wsuggest-attribute warnings and other
noise that doesn't indicate poor code quality.
2017-01-10 13:49:49 -05:00
Quincey Koziol
eefddf2813 Bring new/updated tests from revise+chunks branch: flush1/flush2 update and
flushrefresh test.  (Also refactor of message send / wait code)
2016-12-19 20:44:54 -08:00
hdftest
e0b353b6f5 Snapshot version 1.9 release 235 2016-12-16 15:23:58 -06:00
Quincey Koziol
57afb68e46 Bring SWMR-related tools changes from revise_chunks to develop. 2016-12-11 11:25:08 -08:00
Dana Robinson
a203f2369a Added subdir-objects to AM_INIT_AUTOMAKE. Quiets automake warnings
about forward-compatibility after tools split.
2016-11-10 02:00:58 -05:00
Quincey Koziol
bb6cb6adb0 Code style and warning cleanups, from revise_chunks branch. 2016-11-06 12:08:19 -08:00
Allen Byrne
3ae37a2068 Correct location of file for chmod statement 2016-11-03 11:05:37 -05:00
Allen Byrne
f2d9d05cd0 Add missing h5format_convert generated files 2016-11-03 10:58:43 -05:00
Allen Byrne
7f2a83b6ab Split tools into src and test - update with new files or locations 2016-10-27 10:11:24 -05:00
Scot Breitenfeld
c604bca044 Merge pull request #47 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:develop to develop
* commit 'f9364c0080405bb36d704eb3f9505029d3da41f4':
  removed the use of C_SIZEOF for non BIND(C) derived type
  Fixed test to use storage_size instead of c_sizeof when available.
  fixed missing closing bracket
  Removed unused variables.
  Fixed: Fortran_DOUBLE was being set to  C_LONG_DOUBLE when C_LONG_DOUBLE is not available.
  Removed duplicate FCFLAG
  Removed duplicate FCFLAG.
  Added number of integer KINDs found to the header files.
  Added path to source include files when building buidiface.
  Added rule to build buildiface program, without a rule, build would add repeated compile options when using the NAG compiler.
  Misc. cleaning up of the program.
  Added SEQUENCE to derived types for NAG:
  misc. format code-cleanup
  Removed the use of hard-coded integer KINDs.
  Code clean-up.
  HDFFV-9973 Fortran library fails to compile and fails tests with NAG compiler
2016-10-06 15:34:39 -05:00
lrknox
6cb0d90338 Snapshot release: increment version. 2016-10-01 09:41:26 -05:00
M. Scot Breitenfeld
3befe647ee Added number of integer KINDs found to the header files. 2016-09-26 13:27:50 -05:00
Allen Byrne
092e530f4a [svn-r30242] Cygwin does not implement the getpwuid the same as linux. 2016-08-01 13:22:17 -05:00
Scot Breitenfeld
3f37d67b3c [svn-r30209] HDFFV-9467: Use the same test programs for CMake and autotools
-- Modified C++ to use the same test programs.

Tested: jelly (gnu)
2016-07-20 11:10:42 -05:00
Scot Breitenfeld
304d85c3e7 [svn-r30196] HDFFV-9467: Use the same test programs for CMake and autotools
Tested: jelly (gnu)
2016-07-18 13:37:17 -05:00
Quincey Koziol
35e6928220 [svn-r30127] Description:
Use internal rounding routine, if the StdC ones aren't available (like on
Windows).

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial & parallel
    (h5committest forthcoming)
2016-06-30 15:59:15 -05:00
Quincey Koziol
18ad868b23 [svn-r29924] Description:
Bring h5format_convert tool from revise_chunks branch to trunk.

Tested on:
    MacoSX/64 10.11.4 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
2016-05-12 15:47:03 -05:00
Scot Breitenfeld
92806fb5e6 [svn-r29922] merged -c29913 from 1.10.0 branch. 2016-05-12 13:36:32 -05:00
Dana Robinson
5309de6c54 [svn-r29503] The parallel and enable Java options have been marked as
"unsupported" in the autotools.

Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1
           autotools parallel w/ Java
2016-03-22 03:03:50 -05:00
Dana Robinson
7255d1a1b8 [svn-r29502] The thread-safety and enable Java options have been marked as
"unsupported" in the autotools.

Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1
           autotools serial w/ Java
2016-03-22 02:59:28 -05:00
Dana Robinson
6668fe8c83 [svn-r29499] Minor prettification of Java configure code and library
settings file.

Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1
           autotools serial w/Java
2016-03-22 02:22:52 -05:00
Allen Byrne
b8e163a845 [svn-r29465] Fix issue with .classes dir not getting created for java by adding mkdir .classes to configure. 2016-03-17 11:47:21 -05:00
Allen Byrne
16f2388832 [svn-r29248] Fix test results for HDF_JAVA 2016-03-01 12:54:56 -05:00
Allen Byrne
281a4901f6 [svn-r29242] Set default or override val 2016-03-01 11:00:56 -05:00
Allen Byrne
7705a4d914 [svn-r29239] Add HDF_JAVA AC_SUST line for settings file 2016-03-01 10:25:56 -05:00
Allen Byrne
16e529f5a9 [svn-r29237] Missed a "then" 2016-03-01 10:04:39 -05:00
Allen Byrne
6152dd6532 [svn-r29236] Check for shared libs only within enable-java block 2016-03-01 09:50:49 -05:00
Allen Byrne
63249be0e1 [svn-r29226] HDFFV-9552: merge in java code. 2016-02-28 21:43:00 -05:00
Mike McGreevy
70c24f201c [svn-r29158] HDFFV-9190: Changed configure.ac to define H5_USE_18_API_DEFAULT when
'v18' is provided to --with-default-api-version.

Tested: h5committest.new
        and kituo with --with-default-api-version=v18
2016-02-19 11:21:00 -05:00
Dana Robinson
77f2f1c132 [svn-r29131] Updated the GNU g++ compiler config file to use the new debug/
production, etc. system.

Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
           autotools serial - prod/debug w/ C++
2016-02-16 21:16:27 -05:00
Dana Robinson
ad0925c214 [svn-r29129] Added NO_SYMBOLS_CFLAGS, etc. to allow stripping symbols when
--disable-symbols is specified and to ensure that production
mode (where symbol stripping is usually a part of the FLAGS)
doesn't conflict with --enable-symbols. This will allow better
(though still limited) debugging of production/optimized code.

The PGI, XLC, Intel, and Solaris files were not modified and
do not generate the symbol removal flag at this time. They'll
be updated in future check-ins. In the meantime, production
mode on those platforms still usually strips symbols.

This check-in also updates the Cygwin-specific files to use
the new autotools FLAGS and option scheme when uncommon
(non-gnu, etc.) Fortran compilers are used.

Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
           autotools serial (prod/debug w/ and w/o symbols)
           symbol presence/absence checked with objdump
2016-02-16 20:09:04 -05:00
Dana Robinson
6731dca11f [svn-r29127] Moved the --enable-build-mode check in configure.ac to after the
platform-specific build information so the debug and production
flags are not clobbered.

Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
           autotools serial (production & debug)
2016-02-16 17:42:40 -05:00