Commit Graph

18 Commits

Author SHA1 Message Date
Quincey Koziol
c77e39522b [svn-r12680] Description:
Review, revise & checkin in Peter's latest round of object copy changes,
which add basic support for datasets & attributes with reference datatypes.

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-09-25 17:22:14 -05:00
Quincey Koziol
6b45f5172c [svn-r11245] Purpose:
Code cleanup

Description:
    Trim trailing whitespace, which is making 'diff'ing the two branches
difficult.

Solution:
    Ran this script in each directory:

foreach f (*.[ch] *.cpp)
    sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f
end


Platforms tested:
    FreeBSD 4.11 (sleipnir)
    Too minor to require h5committest
2005-08-13 15:53:35 -05:00
Raymond Lu
cb7f03a26f [svn-r9183] Purpose: New feature
Description:  Restore 6 old error API functions back to the library to be backward
compatible with v1.6.  They are H5Epush, H5Eprint, H5Ewalk, H5Eclear, H5Eset_auto,
H5Eget_auto.  These functions do not have error stack  as parameter.

Solution:  Internally, these functions use default error stack.

Platforms tested:  h5committest and fuss.

Misc. update: RELEASE.txt
2004-09-01 12:43:30 -05:00
Raymond Lu
7e79a8d71e [svn-r7507] *** empty log message *** 2003-09-24 14:26:50 -05:00
Raymond Lu
0d22a663df [svn-r7265] *** empty log message *** 2003-07-25 21:55:47 -05:00
Bill Wendling
44022e598c [svn-r6538] Purpose:
Update

Description:
    Updated the Copyright statement

Platforms tested:
    Linux (This change is only in the comments, so I just check that the
    modules still compile)

Misc. update:
2003-03-31 12:59:04 -05:00
Quincey Koziol
24d8506dd5 [svn-r6387] Purpose:
Bug Fix

Description:
    Metadata cache in parallel I/O can cause hangs in applications which
    perform independent I/O on chunked datasets, because the metadata cache
    can attempt to flush out dirty metadata from only a single process, instead
    of collectively from all processes.

Solution:
    Pass a dataset transfer property list down from every API function which
    could possibly trigger metadata I/O.

    Then, split the metadata cache into two sets of entries to allow dirty
    metadata to be set aside when a hash table collision occurs during
    independent I/O.

Platforms tested:
    Tested h5committest {arabica (fortran), eirene (fortran, C++)
        modi4 (parallel, fortran)}

    FreeBSD 4.7 (sleipnir) serial & parallel

Misc. update:
    Updated release_docs/RELEASE
2003-02-10 12:26:09 -05:00
Bill Wendling
bfd983e7f4 [svn-r3770] Purpose:
Update
Description:
    Changed includes of the form:

            #include <hdf5_file.h>

    to

            #include "hdf5_file.h"

    so that gcc can pick them up easier without including the system
    header files since we don't care about them.
Platforms tested:
    Linux
2001-04-03 13:09:16 -05:00
Quincey Koziol
a319837a4f [svn-r3326] Purpose:
Clean up warnings
Description:
    The "FAILED" macro is defined by Windows and is causing warnings and
    potential errors when compiled on that platform.
Solution:
    Change our macro from FAILED to H5_FAILED.
Platforms tested:
    FreeBSD 4.2 (hawkwind)
2001-01-25 12:03:29 -05:00
Albert Cheng
dd4203674a [svn-r2531] Description:
The "FILENAME" declared extern in h5test.h is not always used.
    It was used in h5_cleanup to remove temporary files created
    during tests.  Not all tests codes have used this routine.
    Indeed, quite a few of test programs do "#define FILENAME ".
    Also, h5_cleanup needs to work in tandem with h5_fixname.
    h5_fixname accepts an explicite base_name argument instead
    of using the global variable FILENAME.  That is cleaner.
Solution:
    Added char *base_name[] as a new argument to h5_cleanup, in
    the same style as h5_fixname.  Removed "extern char *FILENAME..."
    from use.  Also, undo some unnecessary declaration of "char *FILENAME"
    from some tests which don't use it at all (yet).
Platforms tested:
    modi4-64(irix64), arabica(solari2.7), eirene(linux)
    (arabica could not launch tests automatically.  I had to hack
     in LD_LIBRARY_PATH to make them run.)
2000-09-09 19:08:27 -05:00
Robb Matzke
e4834c43ce [svn-r1548] Changes since 19990727
----------------------

./src/H5.c		[1.3]
./src/H5AC.c		[1.3]
./src/H5ACprivate.h	[1.3]
./src/H5B.c		[1.3]
./src/H5Bprivate.h	[1.3]
./src/H5D.c		[1.3]
./src/H5F.c		[1.3]
./src/H5Farray.c	[1.3]
./src/H5Fcore.c		[1.3]
./src/H5Ffamily.c	[1.3]
./src/H5Fistore.c	[1.3]
./src/H5Flow.c		[1.3]
./src/H5Fmpio.c		[1.3]
./src/H5Fprivate.h	[1.3]
./src/H5Fsec2.c		[1.3]
./src/H5Fsplit.c	[1.3]
./src/H5Fstdio.c	[1.3]
./src/H5G.c		[1.3]
./src/H5Gent.c		[1.3]
./src/H5Gnode.c		[1.3]
./src/H5Gprivate.h	[1.3]
./src/H5Gstab.c		[1.3]
./src/H5HG.c		[1.3]
./src/H5HGprivate.h	[1.3]
./src/H5HL.c		[1.3]
./src/H5HLprivate.h	[1.3]
./src/H5MF.c		[1.3]
./src/H5MFprivate.h	[1.3]
./src/H5O.c		[1.3]
./src/H5Oattr.c		[1.3]
./src/H5Ocont.c		[1.3]
./src/H5Odtype.c	[1.3]
./src/H5Oefl.c		[1.3]
./src/H5Olayout.c	[1.3]
./src/H5Oprivate.h	[1.3]
./src/H5Oshared.c	[1.3]
./src/H5Ostab.c		[1.3]
./src/H5P.c		[1.3]
./src/H5R.c		[1.3]
./src/H5Smpio.c		[1.3]
./src/H5T.c		[1.3]
./src/H5Tvlen.c		[1.3]
./src/H5private.h	[1.3]
./test/dtypes.c		[1.3]
./test/gheap.c		[1.3]
./test/istore.c		[1.3]
./test/lheap.c		[1.3]
./test/ohdr.c		[1.3]
./tools/h5debug.c	[1.3]
	File addresses (the `haddr_t' type) are passed by value
	instead of by reference. The type is no longer a struct. This
	is one of the preliminary changes needed for the Virtual File
	Layer stuff.

./src/H5Fprivate.h	[1.3]
./src/H5Flow.c		[1.3]
	Some address functions were rewritten as macros.
1999-07-28 13:25:43 -05:00
Robb Matzke
4354606d1e [svn-r949] Changes since 19981124
----------------------

./src/H5T.c
	Fixed a typo in the registration of the `unsigned char' to
	`unsigned long long' type conversion that caused it to not be
	registered, falling back to software whenever that conversion
	path was taken.

./MANIFEST
./test/Makefile.in
./test/testhdf5.c
./test/testhdf5.h
./test/theap.c		[REMOVED]
./test/lheap.c		[NEW]
./test/tohdr.c		[REMOVED]
./test/ohdr.c		[NEW]
./test/tstab.c		[REMOVED]
./test/stab.c		[NEW]
	Removed the `t' from the front of these names and made each
	test a stand-alone program following the format of most of the
	other tests.

./test/big.c
	Uses libh5test.a but always sets the low-level driver to 1GB
	file family.

	The `#if' near the top to set the data space to 8GB has been
	simplified now that `long_long' is always defined and the
	error message is improved when `long_long' isn't wide enough.

	Cleanup code was added to the error handling.

./test/gheap.c
./test/istore.c
	Uses libh5test.a.  Added error cleanup code.

./test/dtypes.c
./test/h5test.c
	Added 68 new tests that check hardware and software
	conversions between `long long' and `unsigned long long' and
	the other integer types.  The tests only run on machines where
	sizeof(long_long)!=sizeof(long).  We test a total of 180
	different integer conversions, half in hardware and half in
	software.

	Cut down the number of times each test is run from 5 to 1 so
	it doesn't take so long.  If you want to run more times
	there's a constant that can be changed at the top of the file.

./test/extend.c
	Removed unused variable.

./test/h5test.c
./test/h5test.h
./test/external.c
./test/fillval.c
	The h5_cleanup() returns true/false so it can be used in an `if'
	statement to clean up additional files.

./doc/html/Environment.html
	Indented.  Added HDF5_PREFIX and HDF5_DRIVER descriptions.

./src/H5P.c
	Changed the trace type for the second argument from `Iu' to
	`x' since it's an output parameter.

./INSTALL
	Added a warning that the GNU zlib that comes with the latest
	version of HDF4 is too old to use with HDF5 and must be
	renamed so configure doesn't see it when `--enable-hdf4' is
	used.
1998-11-25 09:58:22 -05:00
Robb Matzke
8bb8649482 [svn-r925] Changes since 19981116
----------------------

./INSTALL.parallel	[NEW]
	We're beginning to unify some of the parallel installation
	steps.  This file will contain general information for
	installing the parallel library.  It's not complete yet.

./configure.in
./configure		[REGENERATED]
./src/H5config.h.in	[REGENERATED]
	Check for xdr_int() in libnsl required on Solaris when linking
	with hdf4.  It's found on the Irix system I tested which
	complains that `-lnsl' didn't resolve any symbols. Oh well.

	Fixed the order of searching for libdf and libmfhdf for hdf4
	linking.

./configure.in
./configure		[REGENERATED]
./src/H5config.h.in	[REGENERATED]
./src/H5Z.c
	Check for compress() in libz in order to find older versions
	of the library that will still work for hdf4.  Added a
	separate check for compress2() that hdf5 will use.

./configure.in
./configure		[REGENERATED]
./src/H5config.h.in	[REGENERATED]
./src/H5.c
./src/H5private.h
./src/H5A.c
./src/H5B.c
./src/H5Bprivate.h
./src/H5D.c
./src/H5F.c
./src/H5Farray.c
./src/H5Fcore.c
./src/H5Ffamily.c
./src/H5Fistore.c
./src/H5Flow.c
./src/H5Fmpio.c
./src/H5Fprivate.h
./src/H5Fsec2.c
./src/H5Fsplit.c
./src/H5Fstdio.c
./src/H5Gent.c
./src/H5Gnode.c
./src/H5Gpkg.h
./src/H5Gprivate.h
./src/H5HG.c
./src/H5HL.c
./src/H5O.c
./src/H5Oattr.c
./src/H5Ocomp.c
./src/H5Ocont.c
./src/H5Odtype.c
./src/H5Oefl.c
./src/H5Ofill.c
./src/H5Olayout.c
./src/H5Omtime.c
./src/H5Oname.c
./src/H5Oprivate.h
./src/H5Osdspace.c
./src/H5Oshared.c
./src/H5Ostab.c
./src/H5R.c
./src/H5RA.c
./src/H5Sall.c
./src/H5Shyper.c
./src/H5Snone.c
./src/H5Spoint.c
./src/H5Sprivate.h
./src/H5Sselect.c
./src/H5T.c
./src/H5Tbit.c
./src/H5Tconv.c
./src/H5Tpkg.h
./src/H5V.c
./test/bittests.c
./test/gheap.c
./test/hyperslab.c
./test/istore.c
./test/tmeta.c
./test/trefer.c
./test/tselect.c
./tools/h5debug.c
./tools/h5tols.c
	Added checks for Posix.1g types like `int8_t'.  If not defined
	then H5private.h defines them.  Changed all `int8' etc. to
	`int8_t'.

./src/H5A.c
./src/H5D.c
./src/H5F.c
./src/H5G.c
./src/H5I.c
./src/H5P.c
./src/H5R.c
./src/H5RA.c
./src/H5S.c
./src/H5T.c
./src/H5TB.c
./src/H5Z.c
	Calling H5*_term_interface() resets interface_initialize_g to
	FALSE so a subsequent call to H5open() (implied or explicit)
	reinitializes global variables properly.

./src/H5private.h
./src/H5Oefl.c
./src/H5S.c
	Changed MAX_SIZET, MAX_SSIZET, MAX_HSIZET, and MAX_HSSIZET to
	SIZET_MAX, SSIZET_MAX, HSIZET_MAX, and HSSIZE_MAX to they
	match the Posix.1 constants in <limits.h>.

./src/H5T.c
./src/H5Tconv.c
./src/H5Tpkg.h
./src/H5Tprivate.h
./src/H5detect.c
	Added 36 more integer hardware conversion functions to the
	type conversion table for conversions to/from `long long' and
	`unsigned long long'.  The `long long' names will be changed
	shortly to make them portable to Win32.

	Changed H5T_init() to H5T_native_open() and added an
	H5T_native_close() to open and close the predefined native
	data types.

	Increased the initial size of the type conversion table from
	64 to 128 entries.

	Reordered the 90 new integer conversion functions so the names
	that are printed favor `int' over `short' or `long' when two
	of them are the same.

./test/dtypes.c
	Added hardware and software integer conversion tests for the
	56 functions I added recently but not the additional 36
	checked in this time.  That will come next.

	Call H5close() after each test so type conversion statistics
	are easier to follow.  Try this: $ HDF5_DEBUG=t ./dtypes

	Added more debugging output for when things go wrong.

./src/H5private.h
	Removed trailing carriage-returns inserted by broken operating
	system ;-)
1998-11-18 13:40:09 -05:00
Robb Matzke
1e38c13785 [svn-r633] Changes since 19980828
----------------------

./RELEASE
	Updated with important changes I made since the second beta.

./src/H5A.c
./src/H5D.c
./src/H5Dprivate.h
./src/H5G.c
./src/H5Gprivate.h
./src/H5R.c
./src/H5Rprivate.h
./src/H5T.c
./src/H5Tprivate.h
	Any API function that used to take an `hid_t loc_id' followed
	by a `const char *name' can now take any type of object for
	the loc_id as long as the object is somehow associated with a
	file. Internally, H5G_loc() was modified to return an
	H5G_entry_t* instead of an H5G_t* so it's more general.

	Among other things, this allows one to retrieve information
	about an object like a named type or dataset without knowing
	the name of the type or dataset:

	    int
	    get_nlinks (hid_t obj)
	    {
	        H5G_stat_t	sb;
		if (H5Gstat(obj, ".", TRUE, &sb)<0) return -1;
		return sb.nlink;
	    }

./test/gheap.c
./test/istore.c
	These files needed a couple of changes because they call some
	of the internal functions whose H5G_t arguments changed to
	H5G_entry_t.

./src/H5A.c
	Got rid of all the switch statements for getting symbol table
	entries for varous objects and replaced them with a call to
	H5G_loc() allowing attributes to automatically apply to any
	type of object that belongs to a file.

./test/Makefile.in
	Moved the ragged array tests from the normal list of tests to
	the `make timings' target.

./test/ragged.c
	Added rewrite tests -- rewrite the rows of a dataset changing
	the number of rows and the length of each row.

./test/mtime.c
	Added a test that checks that H5Gstat() can be called with a
	dataset as the first argument.

./src/H5S.c
	Added #ifdef HAVE_PARALLEL around code to check for the
	HDF5_MPI_OPT_TYPES environment variable because the global
	variable that gets set is #ifdef'd.

./bin/release
	bzip2 uses .bz2 as the file extension.
1998-08-31 08:46:47 -05:00
Robb Matzke
1e8ebeecfc [svn-r410] Changes since 19980604
----------------------

./src/H5A.c
	Named data types can have attributes.

	Fixed bugs where the API functions didn't check the return
	values of their internal counterparts and thus the automatic
	error reporting didn't work.

	Fixed some places where the error stack wasn't cleared after a
	function returned failure.

	Data types returned by H5Aget_type() are always read-only.

	If the `attr_num' argument of H5Aiterate() is null then it
	acts like H5Giterate() instead of failing -- it begins
	processing attributes with the first one.

./src/H5D.c
	We check for allocation overruns when scalar datasets are
	stored in external files.

./src/H5O.c
	H5O_modify() will fail if the message is >=16kB.

./src/H5Oattr.c
	Split some long lines

./src/H5T.c
./src/H5Tprivate.h
	Added H5T_entof() to support attributes on named types.

./src/h5ls.c
	Prints the names of attributes and their sizes.

./test/cmpd_dset.c
./test/dsets.c
./test/dtypes.c
./test/extend.c
./test/external.c
./test/gheap.c
./test/istore.c
./test/links.c
./test/shtype.c
	If the environment variable HDF5_NOCLEANUP is defined then the
	temporary files are not removed.  The testhdf5 program still
	has the bug that it removes *.h5, clobbering test files from
	other programs... oh well.

./test/dtypes.c
	Added attribute tests.
1998-06-05 16:03:49 -05:00
Albert Cheng
1327f0c65e [svn-r402] Added cleanup function that removes all temporary test files when
the tests pass.  Should add a "noclean" option that allows the
temporary to stay around even when the tests pass.
1998-05-28 18:02:29 -05:00
Robb Matzke
d392756a1b [svn-r400] Changes since 19980513
----------------------

./html/Datasets.html
	Fixed a couple of typos.

./src/H5.c
	Added the `Z' modifier to HDfprintf() for `size_t' sizes.  Use
	it like this:
	   HDfprintf(stderr,"size is %Zd\n", (size_t)x);

./src/H5AC.c
./src/H5F.c
./src/H5Fprivate.h
	The maximum number of meta data objects that can be cached can
	be set from the application (but the library might not honor
	it every time; it's a hint).

./src/H5D.c
	Changed a warning message so it's not so alarming.

./src/H5Fistore.c
	Chunks can be cached.

./src/H5O.c
./src/H5Oprivate.h
	Added H5O_copy() and H5O_free() to copy and free messages.

./src/H5P.c
./src/H5Ppublic.h
	Added H5Pset_cache() and H5Pget_cache() and changed lots of
	"template" to "property list".

./src/H5Z.c
./src/H5Zpublic.h
	Miscellaneous little things to clean up.  Mostly just removed
	H5Z_MAXVAL and added H5Z_USERDEF_MIN and H5Z_USERDEF_MAX.

./MANIFEST
./test/Makefile.in
./test/chunk.c		[NEW]
	Added a performance test for chunk caching.  It looks at the
	amount of I/O instead of timing because timing is partly
	dependent on the chunk size and I wanted a measurement that
	was a function of only the cache size.  Run `chunk' with no
	arguments and then say `gnuplot x-gnuplot' to see the plots
	(press return between plots). Postscript files are created for
	each plot.

./test/big.c
./test/cmpd_dset.c
./test/extend.c
./test/external.c
./test/gheap.c
	Added H5F_ACC_DEBUG so we can see cache performance
	statistics.
1998-05-22 10:05:53 -05:00
Robb Matzke
a780cdd178 [svn-r335] Changes since 19980330
----------------------

./MANIFEST
./src/Makefile.in
./test/Makefile.in
        Added new files.

./config/linux
./src/H5HL.c
./src/H5HLprivate.h
./src/H5MF.c
./src/H5MFprivate.h
        Added `-DH5HL_DEBUG -DH5MF_DEBUG' to the debug list.

./html/H5.format.html
        Updated shared object message information.

./src/H5D.c
        Datasets can now share data types.

./src/H5F.c
        Updated a comment that referred to H5ACC_WRITE.

./src/H5HG.c
./src/H5HGprivate.h
        Moved a few things around.  Made debugging better so you can
        now give a collection address to ./src/debug and it shows some
        useful stuff.

./src/H5O.c
./src/H5Ocont.c
./src/H5Odtype.c
./src/H5Oefl.c
./src/H5Olayout.c
./src/H5Oname.c
./src/H5Onull.c
./src/H5Oprivate.h
./src/H5Osdspace.c
./src/H5Oshared.c       [NEW]
./src/H5Ostab.c
        Supports shared messages.

./src/H5T.c
./src/H5Tpkg.h
./src/H5Tprivate.h
./src/H5Tpublic.h
        The H5Tshare() function allows the user to give the library
        hints about how a data type will be used.

./test/shtype.c
        Tests the H5Tshare() function.

./test/gheap.c
        Tests the global heap.

./configure.in
./config/BlankForm      [NEW]
./config/alpha-dec
./config/freebsd2.2.1
./config/hpux10.20
./config/irix6.2
./config/irix64
./config/linux
./config/powerpc-ibm-aix4.2.1.0
./config/rs6000-ibm-aix4.1.4.0
./config/solaris2.5
        Cleaned up lots of configuration stuff and made the site
        configuration files lots easier and more uniform.  To make a
        new file grab the BlankForm and modify it.

        By default, debugging is turned on for most packages.  Within
        a package one can use `#ifdef H5AC_DEBUG' to wrap debugging
        code.  Other options are:

           --enable-debug
           --enable-debug=yes
               The default, most but not all packages.

           --disable-debug
           --enable-debug=no
           --enable-debug=none
               The symbol NDEBUG is defined and none of the package
               debug symbols.

           --enable-debug=all
               Debugging is turned on for all packages.  This might
               produce lots of output.

           --enable-debug=g,d
               Debugging is turned on for H5G and H5D.

        A compile mode is also now supported

           --enable-production
           --enable-production=yes
               The library is compiled with optimizations turned on.
               The compiler flags are augmented by adding PROD_CFLAGS
               and PROD_CPPFLAGS which are defined in the site config
               file.

           --disable-production
           --enable-production=no
               The default.  The library is compiled for development
               by including DEBUG_CFLAGS and DEBUG_CPPFLAGS defined in
               the site config file.  This is usually just `-g'.

           --enable-production=profile
           --enable-production=pg
               Builds a library for profiling by including the flags
               from PROFILE_CFLAGS and PROFILE_CPPFLAGS defined in the
               site config file.  This is usullay just `-pg' but it
               could include optimization flags as well depending on
               the type of profile one wants.

        In summary, configure by saying `./configure' and you'll get a
        development version of the library.  Configure by saying
        `./configure --enable-production --disable-debug' and you'll
        get a production version with no debugging code.
1998-04-02 22:29:38 -05:00