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183 Commits

Author SHA1 Message Date
Kimmy Mu
127f07d64a Merge pull request #2071 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/intel_warnings to develop 
* commit '0a2bb11b248df6841daabca3970df5d8504adfc7':
  address problems from comments
  fix and address comments
  change according to previous comments
  add missing piece
  remove unnecessary check macro
  fix intel compile warnings
  Revert "fix warnings from Intel compiler"
  Revert "fix warnings and some text alignment"
  Revert "let hdf5 pick up the right compiler in Intel environment"
  Revert "fix issues from previous PR comments"
  Revert "using a different MACRO"
  using a different MACRO
  fix issues from previous PR comments
  let hdf5 pick up the right compiler in Intel environment
  fix warnings and some text alignment
  fix warnings from Intel compiler
 2020-01-06 12:17:10 -06:00
Jordan Henderson
1795aa660a Clean up tools warnings introduced by H5TOOLS_ERR_INIT macro 2019-12-30 18:02:06 -06:00
kmu
45a62b2d46 fix and address comments 2019-12-11 10:44:56 -06:00
kmu
8b51394f38 Merge branch 'develop' into bugfix/intel_warnings 2019-12-09 09:18:56 -06:00
Allen Byrne
e8ad5f6d1a HDFFV-10876 Update dump to match DDL spec 2019-12-05 17:21:02 -06:00
kmu
132fa33dad fix intel compile warnings 2019-12-03 20:52:55 -06:00
David Young
0108072f7a Revert "Make a squash commit of 'Quiet some warnings by adjusting warnings level and fixing some code.' (commit 5c911d8baf)" 2019-11-27 11:26:02 -06:00
David Young
aa0f3cb1a8 Delete an unused variable. 2019-11-13 11:25:51 -06:00
Allen Byrne
685956cd4c Update format and fix missing prefix 2019-10-21 09:38:37 -05:00
Jerome Soumagne
c13078a0ed Make wrappers, tests and tools use H5Treclaim() instead of H5Dvlen_reclaim() 2019-10-08 14:30:24 -05:00
Allen Byrne
bc61159318 HDFFV-10919 merge synching 2019-10-02 15:13:37 -05:00
Allen Byrne
643d298823 HDFFV-10918 add tests for h5repack ext storage 2019-10-01 16:38:48 -05:00
Allen Byrne
b2f52d0b07 Update versioning to next major version 2019-09-25 17:28:17 -05:00
Larry Knox
b04e1ad058 Update develop branch version to 1.13.0 after creation of hdf5_1_12 
branch.
 2019-09-25 16:21:23 -05:00
Jacob Smith
9a388325eb Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~jake.smith/hdf5 into bugfix/repack_external_storage 2019-09-24 16:40:02 -05:00
Jacob Smith
4ecc50bc13 Update to current external file population. 2019-09-24 15:29:56 -05:00
Jacob Smith
35a9e9c50f Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~jake.smith/hdf5 into bugfix/repack_external_storage 2019-09-23 17:23:02 -05:00
Jacob Smith
aa797af31b Refactor h5repackgentest to have more modular internals, for easier 
addition of new tests.
Update manifest and test script for new hdf5 external-storage .h5 files.
 2019-09-23 16:21:37 -05:00
Allen Byrne
3790ba38a1 HDFFV-10905 fix test scripts for no zlib 2019-09-17 14:38:26 -05:00
Allen Byrne
ba974c031d OESS-29 Update HD prefix mostly 2019-08-24 14:07:33 -05:00
Allen Byrne
64e6665b54 Add HD prefix to tests 2019-08-15 16:46:15 -05:00
Allen Byrne
0147a6c713 Fix VFD tests and repack 2019-08-03 17:28:50 -05:00
Jacob Smith
7d3e170763 Refactoring. 2019-07-29 14:58:39 -05:00
Allen Byrne
da2ec6163d Update libvers usage 2019-07-28 14:41:52 -05:00
Allen Byrne
6a932198aa HDFFV-10529 Update CMake tests to use test fixtures 2019-07-23 16:24:56 -05:00
Jacob Smith
ded30348ae Add copyright/disclaimer to repack gentest. 
Minor formatting tweaks.
 2019-07-22 17:34:01 -05:00
Jacob Smith
c7f8cb011d Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~jake.smith/hdf5 into bugfix/repack_external_storage 2019-07-22 17:09:54 -05:00
Jacob Smith
7ff3a63d5f Minor formatting adjustments. 2019-07-22 16:55:37 -05:00
Allen Byrne
f724e86727 HDFFV-10845 use of TARGETFILE disables auto emulator 2019-07-17 11:58:04 -05:00
Vailin Choi
7485981bca Merge pull request #8 in ~VCHOI/my_third_fork from develop to bugfix/new_shutdown_fsm 
* commit '35fd0ec8ceffe96cee352187154da15c967fb990':
  Updated H5Tcopy() to get the dataset's datatype through the VOL when that is passed in as the object ID.
  Fix fortran test and test library linking
  Update GCC 6 & 7 flags for CMake builds
  Move -Wnormalized down into GCC 6.x flags
  Put the memcpy overlap check back into H5MM.
  Fixed the heap overflow in t_filters_parallel
  Fixed some low-hanging fruit from -fsanitize in t_filters_parallel.
  Add lib dir for testing plugins
  Add support for GCC 7.x warnings, update warnhist script to account for them, clean up warnings.
  Add H5_HLDLL prefix for windows link
  HDFFV-10805 cleanup examples and test code
  Fix minor typo in H5S_select_iter_release
  Add missing fortran mods
  HDFFV-10805 Fix test of library libinfo
  Cleanup possible CMake target conflicts
  Correct CMake issues
 2019-06-24 15:04:38 -05:00
Quincey Koziol
128853b58a Merge branch 'develop' into feature/update_gcc_flags 2019-06-22 11:39:25 -05:00
Allen Byrne
468b130be3 Add lib dir for testing plugins 2019-06-21 13:46:46 -05:00
Quincey Koziol
1ccbdfee58 Add support for GCC 7.x warnings, update warnhist script to account for them, 
clean up warnings.
 2019-06-21 10:05:34 -05:00
Vailin Choi
61b2dddc25 Checkin for new shutting down free-space manager. 2019-06-20 16:14:33 -05:00
Jacob Smith
27d5742b39 Merge branch 'develop' into bugfix/repack_external_storage 2019-06-20 12:37:27 -05:00
Jacob Smith
63fc460c13 Add forgotten files to include from h5repack testfiles for tests. 2019-06-20 12:30:20 -05:00
Jacob Smith
2ba7b8f5e0 Fix failing automated reporting. 
Add 8-bit big-endian testfile.
 2019-06-19 17:15:05 -05:00
Allen Byrne
562cd7f3ab Cleanup possible CMake target conflicts 2019-06-19 10:35:55 -05:00
Allen Byrne
e7f16c6f2c HDFFV-10805 Add option to only build shared targets 
HDFFV-10805 Add ONLY_SHARED_LIBS option and prefer shared over static
HDFFV-10803 Update FindSZIP.cmake find module
Remove unneeded modules and update java modules
 2019-06-18 07:46:25 -05:00
Jacob Smith
ad2a7f4789 First pass at repack consolidating external storage if layout given. 
Checks out manually, tests still complain.
 2019-05-31 17:24:26 -05:00
Jacob Smith
a648183cc3 Add initial failing test for h5repack copying external data into new file. 2019-05-30 15:45:53 -05:00
Jacob Smith
d1ed626845 Fit help message to 80 character width and clarify some details. 2019-05-14 13:53:28 -05:00
hdftest
1cec61a775 Snapshot version 1.11 release 5. 
Update version to 1.11.6.
 2019-05-02 10:42:53 -05:00
Allen Byrne
68bddef35d HDFFV-10741 - remove SKIP_ERRSTK_TESTS option 2019-04-15 14:46:23 -05:00
Quincey Koziol
fc945999d0 Merge remote-tracking branch 'origin/develop' into env_vol_load 2019-04-03 17:27:10 -05:00
Allen Byrne
cb0ff923de Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop) 
* commit '844f38c6462f42a9a3a6002de6a4acb0520b8fb7':
  Correct entry
  Snapshot version 1.11 release 4. Update version to 1.11.5.
  Allow option to select NAMESPACE
  Correct examples for packaging
 2019-04-03 08:56:57 -05:00
hdftest
7a0ac416c9 Snapshot version 1.11 release 4. 
Update version to 1.11.5.
 2019-04-01 16:11:28 -05:00
Allen Byrne
6e2e461087 HDFFV-10741 - add option to skip tool error stack tests 2019-03-26 14:00:34 -05:00
Quincey Koziol
deeb302747 Specify the default VOL connector to use with an environment variable. 
This implicitly adds support for changing the VOL connector for command-line
tools or any application linked with the library.

Also, add 'make check-vol' support for all directories, clearing up necessary
issues in testing scripts, etc.
 2019-03-09 21:41:38 -06:00
Allen Byrne
122b63a5a2 HDFFV-10703 Update CMake commands to latest standard 2019-02-15 15:48:24 -06:00