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3438 Commits

Author SHA1 Message Date
Dana Robinson
ad8f72ca29 Removed HDgets macros since gets was deprecated in C99 and removed 
in C11 (gets() is not used in our repo).
 2020-05-10 03:33:54 -07:00
Dana Robinson
dc3b8372c7 Protected H5Oset_comment() in h5dump test generator. 
(Assumes environment variable overrides default VOL connector)
 2020-04-28 04:21:47 -07:00
Jordan Henderson
0644921cc2 Merge branch 'develop' of ssh://bitbucket.hdfgroup.org:7999/~jhenderson/hdf5 into develop 2020-04-27 18:57:47 -05:00
Jordan Henderson
2442de3389 Fix memory error in h5dump xml 'escape the string' routine 2020-04-27 18:57:36 -05:00
Quincey Koziol
4186e0d5be Merge pull request #2540 in HDFFV/hdf5 from extend_h5debug to develop 
* commit '3f3363177d5cc1efc8fcfc70e1feed7a293da2d4':
  Range check # of 'extra' command-line parameters against array size.
  Refactor "extra" command-line arguments, and clean up code so the tool doesn't assert when exiting.
  Extend h5debug to support 3-D datasets for chunks.
 2020-04-27 18:48:32 -05:00
Dana Robinson
bf5e832acc Fixed pio_perf const pointers. 2020-04-27 09:58:11 -07:00
Dana Robinson
c03ee563f4 Further updates to the tools warnings fixes from code review. 2020-04-27 08:50:27 -07:00
Dana Robinson
de3bfa697a Updates to tools warning PR from code review. 2020-04-26 02:54:29 -07:00
Quincey Koziol
3f3363177d Range check # of 'extra' command-line parameters against array size. 2020-04-25 22:52:52 -05:00
Quincey Koziol
c18ed719ec Refactor "extra" command-line arguments, and clean up code so the tool doesn't 
assert when exiting.
 2020-04-25 20:48:32 -05:00
Dana Robinson
a8676d74d9 Fixes for warnings in the tools code. 2020-04-25 16:49:04 -07:00
Quincey Koziol
ed833f1c8d Extend h5debug to support 3-D datasets for chunks. 2020-04-24 21:13:31 -05:00
Dana Robinson
1db039d1be Merge pull request #2532 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor to develop 
* commit '785bd0975ba13c3033820d0fc809da963fcd54ca':
  Fixed h5diff command-line parameters to use 1 and 2 instead of src and dst.
  Added VOL command-line options to (p)h5diff, h5ls, h5dump, and h5mkgrp.
 2020-04-22 19:07:48 -05:00
Dana Robinson
785bd0975b Fixed h5diff command-line parameters to use 1 and 2 instead of src 
and dst.
 2020-04-22 16:49:52 -07:00
Dana Robinson
8cd9d8349e Added VOL command-line options to (p)h5diff, h5ls, h5dump, and h5mkgrp. 2020-04-21 11:36:10 -07:00
Dana Robinson
729ad25bdf Merge pull request #2530 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor to develop 
* commit 'c6097935d5be4c3750b9bf9167783ad28158905b':
  Separated VFD and VOL parameters in tools.
 2020-04-21 08:49:15 -05:00
Dana Robinson
c6097935d5 Separated VFD and VOL parameters in tools. 2020-04-20 17:38:45 -07:00
Quincey Koziol
9e5dbf6906 Trim trailing whitespace 2020-04-20 18:12:00 -05:00
Dana Robinson
9ecca22dd1 Fixed problems with S3 and HDFS VFDs. 
* Updated info struct parameter to correct info_string
* Fixed Makefile.am where the S3 VFD was listed twice, causing
  duplicated symbols errors.
 2020-04-16 17:07:21 -07:00
Dana Robinson
2188e7d731 Update h5repack long arguments for id-->value changes. 2020-04-14 05:16:01 -07:00
Dana Robinson
28d2596f65 Changed identifiers and command-line options from "id" to "value" in tools 
code to be in agreement with H5VL API terminology.
 2020-04-14 04:31:01 -07:00
Dana Robinson
d86089f583 Added support for passing connector info strings via the command 
line to the tools internals.
 2020-04-09 08:40:41 -07:00
Dana Robinson
35c0d5cdfc Fix for passthrough VOL not passing tools tests due to incorrect 
optional callback queries.
 2020-04-08 16:44:19 -07:00
Allen Byrne
61b8018004 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop) 
* commit 'f6514c35ea3786206a8db73e1cad8fce8fe6a715':
  Updated test ddl files so CMake passes after h5dump failures.
  Modifications based on PR review feedback.
  Add two routines gen_ref_files() and gen_sel_files() to generate test files related to references and selections. These test files will be copied to 1.12, 1.10 and 1.8 for compatibility testing.
 2020-04-07 07:08:16 -05:00
Dana Robinson
8e948aa7b7 Updated test ddl files so CMake passes after h5dump failures. 2020-04-06 15:19:55 -07:00
Allen Byrne
fd18d013f1 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop) 
* commit '4830a1796441abbb5a4fbd2cff9a651f2a0d066e':
  Updated tools dump output when dataset offset is undefined.
  Added checks for native optional call support in some of the tools.
  Misc changes for h5dump VOL changes.
 2020-04-06 14:13:27 -05:00
Dana Robinson
110cafb9c7 Merge branch 'develop' into tools_vol_update 2020-04-06 09:38:00 -07:00
Allen Byrne
70495751c0 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop) 
* commit '5d1590079ea0061a7b86d7210cb796b6d58a17c7':
  Skip testing of passthrough VOL connector in a Family File tools test
  Restore previous tools library driver name behavior with passthrough VOL connector
 2020-04-05 11:06:35 -05:00
Allen Byrne
57f5d00a43 TRILAB-192 add c++ and fortran warnings build systems one file 2020-04-05 10:50:08 -05:00
Jordan Henderson
5d1590079e Merge pull request #2490 in HDFFV/hdf5 from tools_vol_update to develop 
* commit 'a5a2fb44296327787476407a249d9470b3c80427':
  Skip testing of passthrough VOL connector in a Family File tools test
  Restore previous tools library driver name behavior with passthrough VOL connector
 2020-04-03 15:06:08 -05:00
Jordan Henderson
a5a2fb4429 Skip testing of passthrough VOL connector in a Family File tools test 2020-04-03 14:29:10 -05:00
Jordan Henderson
08e77ac6fa Restore previous tools library driver name behavior with passthrough VOL connector 2020-04-03 12:45:22 -05:00
Allen Byrne
b7227657f2 Add missing header include 2020-04-03 08:50:51 -05:00
Dana Robinson
85b3b9e670 Updated tools dump output when dataset offset is undefined. 2020-04-02 10:25:46 -07:00
Dana Robinson
1c85473766 Fixed unnecessary H5R casts in the tools that were raising warnings. 2020-04-02 03:57:05 -07:00
Dana Robinson
456308ff17 Added checks for native optional call support in some of the tools. 2020-04-02 02:12:19 -07:00
Dana Robinson
3cd1b46b9c Merge branch 'develop' into tools_vol_update 2020-04-01 23:27:08 -07:00
Dana Robinson
b1533616f2 Minor renaming in the tools code. 2020-03-31 16:58:24 -07:00
Dana Robinson
816a12f04f Merge branch 'develop' into tools_vol_update 2020-03-31 03:43:03 -07:00
Gerd Heber
a46f31c2eb Merge pull request #2479 in HDFFV/hdf5 from ~GHEBER/hdf5:bugfix/HDFFV-11065 to develop 
* commit '2dfc047bc4aca7c13bccf44da97bff026cbbf5a6':
  Fix for HDFFV-11065.
 2020-03-30 11:26:14 -05:00
Dana Robinson
c36b707578 Merge branch 'tools_vol_update' of https://bitbucket.hdfgroup.org/scm/~derobins/hdf5_der into tools_vol_update 2020-03-30 01:52:21 -07:00
Dana Robinson
36e8e2be4b Misc changes for h5dump VOL changes. 2020-03-30 01:51:36 -07:00
Gerd Heber
2dfc047bc4 Fix for HDFFV-11065. 2020-03-29 16:04:58 -05:00
Jordan Henderson
9676029742 Fix latent bug in h5repack options file reading 
Add 'enable-error-stack' option to h5format_convert
 2020-03-29 12:37:14 -05:00
Dana Robinson
2dd6075c7a Minor renaming in h5dump (addr --> token) 2020-03-27 17:17:00 -07:00
Allen Byrne
c66ce89383 Merge pull request #2473 in HDFFV/hdf5 from tools_vol_update to develop 
* commit 'feb0f521b16b79485c22c86a630a1d91cb680a61':
  Fix some missing symbols issues in tools library
 2020-03-27 17:06:23 -05:00
Jordan Henderson
feb0f521b1 Fix some missing symbols issues in tools library 2020-03-27 16:54:05 -05:00
Jordan Henderson
d5bbf3d408 Merge pull request #2469 in HDFFV/hdf5 from tools_vol_update to develop 
* commit 'ea952b25ba0fd5c4b5f60a94e75a1b5b78e66172':
  A few small tweaks to the tools from review
  Replace usage of some standard library functions with HD- versions
  Update Tools library to be better compatible with VOL connectors
 2020-03-27 13:14:22 -05:00
Jordan Henderson
ea952b25ba A few small tweaks to the tools from review 2020-03-27 10:48:11 -05:00
Jordan Henderson
6d514db55a Replace usage of some standard library functions with HD- versions 2020-03-26 15:26:39 -05:00