* Fix HDFFV-11308 - dataset access properties disappear when using
H5Fstart_swmr_write.
* Committing clang-format changes
* Add test for H5Fstart_swmr_write() persisting DAPL settings. Fix bugs
in the library exposed by this test.
* Committing clang-format changes
* Replace accidental use of double_t in swmr.c with double.
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Fix HDFFV-11308 - dataset access properties disappear when using
H5Fstart_swmr_write.
* Committing clang-format changes
* Add test for H5Fstart_swmr_write() persisting DAPL settings. Fix bugs
in the library exposed by this test.
* Committing clang-format changes
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Fixes a stack overflow in the h5dump test generator
The opaque type size was declared to be the size of the "buffer of two
opaque elements", causing a memcpy call in H5Dwrite to read outside
the buffer, dumping garbage into the file.
Note that this only affected the test generator and not h5dump itself.
* Committing clang-format changes
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Fixes warnings when the deflate filter is not built
* Committing clang-format changes
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Removes the small perf tool
This tool doesn't really do anything special and installed, which
conflicts with gnu's perf tool.
* Adds suggestions from code review
* Fix for a tools compile issue when deprecated symbols are disabled
Introduced in #1811, also uses VOL token instead of addr
* Fix for similar compile issues in java when deprecated symbols are
disabled.
* Committing clang-format changes
Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* H5Oflush causes H5Fclose to trigger an assertion failure in metadata cache for parallel. This commit makes sure H5Oflush fails for parallel until this problem is solved in the future.
* Committing clang-format changes
* Changed the use of H5F_get_driver_id to H5F_HAS_FEATURE.
Co-authored-by: songyulu <songyulu@jelly.ad.hdfgroup.org>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
LLONG_MAX and ULLONG_MAX are defined in limits.h in C99. SIZET_MAX
should be SIZE_MAX, which has been around forever. SSIZET_MAX should
be SSIZE_MAX, which is defined whereever ssize_t is found. I've kept
the definition for SSIZE_MAX (renamed from SSIZET_MAX) for platforms
where ssize_T is not present (e.g., Windows).
* Fixes for warnings identified by MSVC
* Committing clang-format changes
* Moves the casts in H5Binternal.c to the other side
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Rework java vl check in read/write. Handle old refs in h5dump
* Committing clang-format changes
* Java changes allow default VL reads
* Fix JNI utility for old refs
* HDFFV-11310 - implement vlen read/write for atomic types.
* format check fix
* Mostly format fixes
* More format issues
* Two format changes
* Use JNI names for sizeof
* format change
* fix size typo
* Change to older method to initialize list
* remove unused var
* format fix
* switch writeVL functions to use datatype instead of java type
* Add VL option to generic read/write check
* Correct function name typo
* Add JIRA issue
* Correct note to match change in code.
* HDFFV-11318 add VL references as byte arrays
* Add release note and format changes
* Another format update
* Fix unreleased allocations
* Fix format
* format correction
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Initial implementation for supporting UnifyFS in HDF5 with MPI_File_sync after write
* Committing clang-format changes
* Fix format
* Fix env variable and return value check
* Fix flag retrieve
* Fix issues with getting/setting the flag
* Fix merge conflicts
* Update
* Committing clang-format changes
* Update based on suggestions
* Committing clang-format changes
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Minor clang warning fixes in src and test
* Fixes clang warnings in high-level library
* clang format-nonliteral warning fixes
* Committing clang-format changes
* Fixed int -> float clang cast warnings in h5diff
* Quiets some warnings in flex/bison generated code
* Suppress overlong string warning for libinfo on clang
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Fixes for production mode gcc warnings
With the strict-overflow changes, this brings the number of warnings
in the C library w/ gcc 12 to zero.
* Fix typo
* Committing clang-format changes
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Adds format attribute to (s|p)io_perf code
* Added gcc format attribute to additional test code
* Committing clang-format changes
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
GitHub issue #732 claims that mallocing a particular buffer can
trigger undefined behavior and that callocing the buffer fixes
the issue.
I did not confirm this, but the fix is trivial and better anyway.
Very new versions of Autoconf complain about our Java macros. Since they
work well enough and there is no obvious upgrade path, we're suppressing
the category for now.
