Commit Graph

1865 Commits

Author SHA1 Message Date
Allen Byrne
5425a571e0
Convert develop to v2.0.0 (#5006)
Switches previous 1.16/17/18 values to 2.0
2024-10-27 21:51:07 -07:00
Dana Robinson
7f1e49206d
Renamed COPYING to LICENSE (#4978)
This is where most people will expect to find license information. The
COPYING_LBNL_HDF5 file has also been renamed to LICENSE_LBNL_HDF5.
The licenses are unchanged.
2024-10-18 21:13:04 -07:00
Scot Breitenfeld
610648efd2
The h5(p)*c parser retains escaped whitespace character (#4967) 2024-10-18 09:03:42 -07:00
Scot Breitenfeld
ad307bf61f
Updated hyperslab documentation (#4965)
* corrected Fortran docs for hyperslab selection

* updated hyperslab op doc
2024-10-17 09:17:20 -07:00
Scot Breitenfeld
6b43197b08
Fixed data typing errors discovered by promoting integers and reals. (#4947) 2024-10-11 16:18:48 -07:00
Dana Robinson
54f8f12ed9
Update clang-format to 17 (#4931)
Also bump the clang-format GitHub actions to 17
2024-10-04 19:49:35 -07:00
Quincey Koziol
767282f68a
VOL refactor and cleanup (#4856)
Cleanup and prepare for thread-safety changes.

Big ideas:

* Wrap H5VL_class_t with H5VL_connector_t, so use of the class can be refcounted within the H5VL package, instead of relying on storing an ID within the H5VL_t struct and incrementing & decrementing the ID's refcount.
* Register H5VL_connector_t* for VOL connector IDs, instead of the H5VL_class_t*
* Stop other packages from rummaging around inside H5VL_connector_t and H5VL_object_t data structures, so that the H5VL package can change implementation details without coupled changes throughout the library

Small things:

* Simplified the coding for creating links
* Moved some routines into more logical locations
2024-10-03 12:19:33 -07:00
Allen Byrne
d2faa1bf50 Correct size of array 2024-10-02 19:53:38 -05:00
Allen Byrne
07756c87f5 Update develop to 1.18 API 2024-10-02 19:53:38 -05:00
Larry Knox
405d1b91d9
Update h5fc.in missed line for libhdf5hl_fortran filename change to libhdf5_hl_fortran. (#4831)
* Change name of libhdf5hl_fortran installed by autotools to libhdf5_hl_fortran to be
consistent with CMake install and with other hl lib files.  Switched
corresponding symlink to libhdf5hl_fortran.
Fixes issue #4684.

* Update h5fc.in to use renamed libhdf5_hl_fortran.
Fix typo in code to create link to libhdf5_hl_fortran.a.

* Removed code to create symlink for previous name of renamed lib
libhdf5hl_fortran.
Add RELEASE.txt entry about changeing name libhdf5hl_fortran to
libhdf5_hl_fortran.

* Update missed line in h5fc.in for libhdf5hl_fortran name change to
libhdf5_hl_fortran.  Fixes check-install failure.
2024-09-16 10:53:33 -07:00
Larry Knox
baa04393fb
Change name of libhdf5hl_fortran installed by autotools (#4811)
* Change name of libhdf5hl_fortran installed by autotools to libhdf5_hl_fortran to be
consistent with CMake install and with other hl lib files.  Switched
corresponding symlink to libhdf5hl_fortran.
Fixes issue #4684.

* Update h5fc.in to use renamed libhdf5_hl_fortran.
Fix typo in code to create link to libhdf5_hl_fortran.a.

* Removed code to create symlink for previous name of renamed lib
libhdf5hl_fortran.
Add RELEASE.txt entry about changeing name libhdf5hl_fortran to
libhdf5_hl_fortran.
2024-09-07 10:27:33 -07:00
bmribler
d875f749e5
Add tests for H5R get name APIs (#4657)
Added functionality tests for the following APIs:
H5Rget_file_name
H5Rget_obj_name
H5Rget_attr_name

Also removed "+1" when returning a name length in H5R__get_attr_name().
The exter "+1" gave an incorrect value for the length of the referenced
object's attribute name.

Fixed GH-4447

* Fix Fortran test

The C API H5Rget_attr_name incorrectly added 1 to the length of the
referenced object's attribute name, so the Fortran API h5rget_attr_name_f
removed 1 from the returned value to accommodate the incorrectness.
This PR fixes H5Rget_attr_name so this workaround in h5rget_attr_name_f
is no longer needed.

* Add test H5Aget_name against H5Rget_attr_name
2024-08-12 09:40:48 -05:00
Allen Byrne
f77b70859f
Rework Dynamic Analysis and sanitize testing (#4681)
* Ignore predetermined failing test and check pointer before use

* Rework Analysis process
2024-08-05 09:53:53 -05:00
Allen Byrne
e71605966a
Update doxygen Learn Basics / example refs. Add Reference sections (#4640) 2024-07-15 22:02:08 -05:00
Dana Robinson
9b5d9680af
Clean up Fortran __float128 configure-time checks (#4649)
* Always use DECIMAL_DIG instead of LDBL_DIG. This was controlled by
  an ifdef that is always true in C99 or greater

It's confusing to use float.h C constants as variable names in
configure.ac and the PAC_FC_LDBL_DIG macro.

* Directly compare MY_FLT128_DIG and MY_LDBL_DIG

* Make uniform across CMake and Autotools
* Don't export quadmath.h variables to H5pubconf.h
2024-07-15 07:38:13 -05:00
Scot Breitenfeld
96acf6c739
corrected offset type in C wrapper (#4622) 2024-07-05 12:39:43 -07:00
jhendersonHDF
773831f3cb
Add H5F_LIBVER_V116 to internal library version structures (#4619)
Also add H5F_LIBVER_V116 flag to Fortran wrappers
2024-07-02 09:26:05 -05:00
Allen Byrne
bf843c54f0
Fix Fortran pkconfig to indicate full path of modules (#4593) 2024-06-27 13:36:20 -05:00
Allen Byrne
dca6370691
Move C++ and Fortran and examples to HDF5Examples folder (#4552) 2024-06-08 06:46:09 -05:00
Allen Byrne
162e7d676d
Allow HDF5_LIB_INFIX to work with DLL (#4500)
* Allow HDF5_LIB_INFIX to work with DLL

* Separate individual library name into parts and add suffix option

* Java cannot use alternative names and removed extra setting

* Incorporate the underscore into the CORE name
2024-05-28 08:27:15 -07:00
Scot Breitenfeld
fe0df13115
Add H5fortkit dependecy for H5Rff.F90 (#4482) 2024-05-14 11:10:43 -05:00
Julien Schueller
239d2f849d
CMake: Fix mingw/fortran build (#4466) 2024-05-10 12:33:55 -05:00
Scot Breitenfeld
dfc6295c1d
Fixed failures with xl compilers. (#4458)
* type cast constant

* fixed return types
2024-05-02 15:33:20 -05:00
Scot Breitenfeld
abf8b01f55
H5R Fortran wrappers and misc. H5R API/DOC updates (#4446)
- Add Fortran H5R APIs:
      h5rcreate_attr_f, h5rcreate_object_f, h5rcreate_region_f,
      h5ropen_attr_f, h5ropen_object_f, h5ropen_region_f,
      h5rget_file_name_f, h5rget_attr_name_f, h5rget_obj_name_f,
      h5rcopy_f, h5requal_f, h5rdestroy_f, h5rget_type_f

    - Fixed function H5Requal actually to compare the reference pointers

      Fixed an issue with H5Requal always returning true because the
      function was only comparing the ref2_ptr to itself.
2024-05-01 05:39:01 -07:00
bmribler
84fac90ce8
Correct the high-level library link (#4398)
* Correct the high-level library link

The link currently used points to 1.13 release.  Changed to use the md file instead.

* Update Doxyfile for md files

* Update to include md files
2024-04-12 12:37:15 -07:00
Scot Breitenfeld
527ab8c2fd
Removed duplicate entries in compile line for h5* compiler wrappers (#4360)
* h5fc remove duplicate args
* h5 wrappers remove duplicate args
2024-04-09 17:01:00 -07:00
Scot Breitenfeld
f6ae241032
Addresses configuration fortran testing flags (#4276)
* turn warnings to errors in fortran configure test

* Intel fortran test fix
2024-03-28 16:55:32 -05:00
Scot Breitenfeld
df9d2eafab
MPI type correction (#4268)
* corrected type for MPI_*_f2c APIs

* fixed return type of callback

* reset compilation flags of logical test program
2024-03-27 22:20:25 -05:00
H. Joe Lee
ce3784de25
Replace user-define with user-defined (#4261) 2024-03-27 13:55:44 -07:00
Scot Breitenfeld
724eaaf618
Determine MPI LOGICAL during build, used in tests. (#4246) 2024-03-26 09:05:51 -07:00
Scot Breitenfeld
6837fe5bc8
Addressed Fortran issues with promoted integers and reals via compilation flags, part 2 (#4221)
* addressed issue wit promoted integers and reals

* fixed h5fcreate_f

* added option to use mpi_f08

* change the kind of logical in the parallel tests

* addressed missing return value from callback
2024-03-25 07:42:03 -05:00
Scot Breitenfeld
c1a56f432e
Revert "Addressed Fortran issues with promoted integers and reals via compil…" (#4220)
This reverts commit 06c42ff038.
2024-03-23 07:16:43 -07:00
Scot Breitenfeld
06c42ff038
Addressed Fortran issues with promoted integers and reals via compilation flags (#4209)
* addressed issue wit promoted integers and reals

* added option to use mpi_f08
2024-03-22 11:52:58 -05:00
Scot Breitenfeld
8621663b99
Reworked H5Epush_f (#4153) 2024-03-19 04:59:32 -07:00
Scot Breitenfeld
e913eee81c
defined CMAKE_H5_HAVE_DARWIN (#4146) 2024-03-15 10:05:14 -07:00
Scot Breitenfeld
ece121b415
Fixed misc. H5E fortran failures due to previous PR (#4138)
* fixed promotion of integers and reals tests and check-passthrough-vol failure

* fixed cygwin issue
2024-03-15 07:37:22 -05:00
Jouke Witteveen
cfb1c798b9
Don't set the rpath when linking statically (#4125) 2024-03-13 08:03:21 -07:00
Dana Robinson
0ea1d7280b
Clean up off_t usage (#4095)
* Add comments to C++ and Fortran API calls that use off_t
* Remove noise casts for small integers
2024-03-09 09:06:10 -08:00
Scot Breitenfeld
f22f538ab7
fixes compilation failures due to H5E additions (#4090) 2024-03-08 10:57:05 -08:00
Scot Breitenfeld
bc0c42695f
addressed compilation errors with gfortran 4.8 (#4082) 2024-03-07 10:44:14 -08:00
Scot Breitenfeld
9d8e882496
Added new H5E with tests. (#4049)
Added Fortran H5E APIs:
h5eregister_class_f, h5eunregister_class_f, h5ecreate_msg_f, h5eclose_msg_f
h5eget_msg_f, h5epush_f, h5eget_num_f, h5ewalk_f, h5eget_class_name_f,
h5eappend_stack_f, h5eget_current_stack_f, h5eset_current_stack_f, h5ecreate_stack_f,
h5eclose_stack_f, h5epop_f, h5eprint_f (C h5eprint v2 signature)

Addresses Issue #3987
2024-03-07 03:34:55 -08:00
Allen Byrne
0be892585a
Rename incorrectly named option (#4067)
* Rename incorrectly named option

* Restore the correct uses of USING_MEMCHECKER

* Update release note
2024-03-05 09:07:16 -08:00
Scot Breitenfeld
e7f41a2fbf
Fix the datatype passed to H5*exists_async APIs in tests. (#4033)
Add a new testing function to verify C_BOOL values.
2024-02-23 07:57:30 -06:00
Scot Breitenfeld
9c327bc616
append '-WF,' when passing C preprocessor directives to the xlf compiler (#3976)
* append '-WF,' when passing C preprocessor directives to the xlf compiler

* strip path from compiler name
2024-01-31 23:04:43 -06:00
Scot Breitenfeld
3a3501df2d
h5 compiler wrappers now pass all arguments passed to it to the compile line (#3954)
* The issue was that the "allargs" variable was not being used in the final command of the compiler wrapper. Any entries containing an escaped quote (\", \') or other non-matching argument (*) would not be passed to the compile line. I have fixed this problem by ensuring all arguments passed to the compiler wrapper are now included in the compile line.

* added testing for compiler wrappers
2024-01-30 12:20:58 -06:00
Scot Breitenfeld
791915e92a
Fixed XL and gfortran errors (#3968)
* fixed XL and Gfortran errors

* fixed data type len array
2024-01-30 09:05:20 -08:00
Scot Breitenfeld
d79667eb0c
Add API support for Fortran MPI_F08 module definitions. (#3959)
* revert to using c-stub for _F08 MPI APIs

* use mpi compiler wrappers for cmake and nvhpc
2024-01-29 13:13:33 -06:00
Scot Breitenfeld
424f3803ea
fixed BIND name (#3957)
* update H5Ssel_iter_reset_f test
2024-01-24 10:19:47 -06:00
Scot Breitenfeld
54fb809382
Fortran API work. (#3941)
* - Added Fortran APIs:
      H5FGET_INTENT_F, H5SSELECT_ITER_CREATE_F, H5SSEL_ITER_GET_SEQ_LIST_F,
      H5SSELECT_ITER_CLOSE_F, H5S_mp_H5SSELECT_ITER_RESET_F

    - Added Fortran Parameters:
      H5S_SEL_ITER_GET_SEQ_LIST_SORTED_F, H5S_SEL_ITER_SHARE_WITH_DATASPACE_F

    - Added tests for new APIs
    - Removed H5F C wrapper stubs
    - Documentation misc. cleanup.
2024-01-23 07:59:10 -08:00
Scot Breitenfeld
9d1fe2c166
renamed defined H5_VERS* to avoid conflicts (#3926) 2024-01-05 06:55:54 -06:00