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769 Commits

Author SHA1 Message Date
Vailin Choi
2886cd9e45 HDFFV-10365: Changes as described in the RFC: H5Sencode/H5Sdecode Format Change. 
This also addresses HDFFV-10255: H5Sencode/decode performance issue.
 2019-04-06 16:55:14 -05:00
Quincey Koziol
deeb302747 Specify the default VOL connector to use with an environment variable. 
This implicitly adds support for changing the VOL connector for command-line
tools or any application linked with the library.

Also, add 'make check-vol' support for all directories, clearing up necessary
issues in testing scripts, etc.
 2019-03-09 21:41:38 -06:00
Allen Byrne
122b63a5a2 HDFFV-10703 Update CMake commands to latest standard 2019-02-15 15:48:24 -06:00
Quincey Koziol
10cdff5ca4 Merge pull request #1540 in HDFFV/hdf5 from merge_hyperslab_changes_01 to develop 
* commit 'fb5d1a37c11bca613175a48262a2147e99c9dede':
  Align develop with incoming hyperslab_updates branch changes.
 2019-02-13 18:13:18 -06:00
Allen Byrne
b95f05638c TRILAB-111 fixes for parallel testing 2019-02-13 15:53:59 -06:00
Quincey Koziol
b5305b25a6 Align develop with incoming hyperslab_updates branch changes. 2019-02-12 21:51:15 -06:00
Jordan Henderson
34508f0620 Merge in latest from develop 2019-02-11 19:13:39 -06:00
Jordan Henderson
65a820ae89 Fix some collective metadata read issues 2019-02-11 18:31:23 -06:00
Allen Byrne
6f71b2cdcf Refactor mpi test names 2019-02-11 12:42:46 -06:00
Allen Byrne
d98faf5703 Rename parallel tests to start with PAR_ 2019-02-11 11:09:43 -06:00
Jordan Henderson
28b9af4f28 Fix test issue in testpar/t_dset.c with MPI-2 implementations 2019-02-07 14:31:32 -06:00
Quincey Koziol
fed17ed383 HDFFV-10625 -- Implemented a process-0 read and then broadcast for collective read of full (HS_ALL), contiguous, atomic datasets by all the processes in the file communicator. 2019-01-07 16:55:59 -06:00
Dana Robinson
d59aa1d75c Cleaned up the parallel flush test and set t_pflush1 to always fail. 
Also set CMake to handle this.
 2019-01-03 20:45:58 -08:00
Dana Robinson
4faca62679 Eliminated the need for a separate script variable. 2018-12-31 05:04:30 -08:00
Dana Robinson
a3faa92653 Merge branch 'develop' into openmpi_tweaks 2018-12-30 22:24:42 -08:00
Dana Robinson
552fec96e9 Merge branch 'develop' into md_cache_logging_squash 2018-12-27 22:22:24 -08:00
Allen Byrne
991996b251 Remove unused CMake files 2018-12-21 12:22:32 -06:00
Dana Robinson
18e6ec82d0 Squash merge of MDC logging changes. 2018-12-20 20:41:42 -08:00
Allen Byrne
3c8b00dbd8 HDFFV-10656 remove moved source 2018-12-20 15:35:37 -06:00
Allen Byrne
7e8923957f HDFFV-10656 Add CHECK_VOL support to CMake 2018-12-20 15:11:27 -06:00
Dana Robinson
64eb1489de Added a helpful message to the flush script. 2018-12-20 03:43:53 -08:00
Dana Robinson
fe1a5b4279 Added a shell script so we can run the parallel flush test 
on OpenMPI.
 2018-12-20 03:03:16 -08:00
Jordan Henderson
406f7916ce Updates to t_filters_parallel for missing filters 2018-12-05 15:23:44 -06:00
Dana Robinson
6fccabed2e Missed some function renames in error text. 2018-11-27 11:50:35 -08:00
Dana Robinson
8cf3bfb14b Yanked all MPI-1 calls 2018-11-27 10:31:54 -08:00
Dana Robinson
e962df1591 VOL FEATURE 2018-10-10 08:10:15 -07:00
Allen Byrne
a2da9930af replace page chars 2018-09-27 11:50:22 -05:00
Allen Byrne
8e48f6ec3a Remove obsolete comment 2018-09-27 09:58:27 -05:00
Allen Byrne
27af9a7922 HD prefix and whitespace 2018-08-28 10:54:54 -05:00
Jordan Henderson
556bfd498c Update MANIFEST file for new t_coll_md_read.c file 
Remove old line from copyright notice
 2018-08-27 08:56:17 -05:00
Jordan Henderson
4cd10fa88e Add fix for HDFFV-10501 
Add test for HDFFV-10501 fix

Add release note for HDFFV-10501 fix
 2018-08-25 22:54:30 -05:00
Jordan Henderson
70de0b18e3 Merge pull request #1167 in HDFFV/hdf5 from ~JHENDERSON/hdf5:bugfix/MPI2_only_fixes to develop 
* commit '9aa2eaeb9ed9c94f63973cb55f13de256558497c':
  Add Autotools and CMake checks for big I/O MPI-3 functions
  Add hdf5settings section for parallel compression status in CMake builds
  Switch to CheckSymbolExists in CMake
  Add configure check for MPI_Mprobe and MPI_Imrecv functions
 2018-08-02 09:25:00 -05:00
Jordan Henderson
d075c0854d Add quotes to places where MPI_C_LIBRARIES are linked against 2018-07-27 14:58:01 -05:00
Jordan Henderson
e1e10743cf Add configure check for MPI_Mprobe and MPI_Imrecv functions 
Add line to libhdf5settings file for status of Parallel writes to
filtered datasets status

Surround Parallel Compression code in MPI_VERSION >= 3 checks

Add disabled message for Parallel Compression built w/ MPI-2

Modify Parallel Compression tests to only run the parallel filtered read
tests when parallel filtered writes are disabled

Update big I/O code to handle being built with MPI-2

Add checks to CMakeLists.txt for MPI_Mprobe and MPI_Imrecv
 2018-07-26 12:50:26 -05:00
Jordan Henderson
9fe86bc51c Add test to continually grow and shrink chunks 2018-06-04 13:49:42 -05:00
Jordan Henderson
e2c9f5a27a Changes to test with checksum filter as well as deflate filter 2018-06-04 10:53:08 -05:00
Jordan Henderson
6e37dff71f Fix bug in parallel reads of compressed data 
Add remaining parallel compound dataset partial read tests
 2018-05-17 11:07:23 -05:00
Jordan Henderson
2c8e6e6304 Add data verification to parallel filtered compound write tests 
Add 3D parallel filtered partial read tests
 2018-05-16 20:29:35 -05:00
Jordan Henderson
13f1790851 Add seven of fourteen parallel filtered data partial read tests 2018-05-15 14:12:32 -05:00
Allen Byrne
2347bffaa2 TRILABS-19 remove add_defintions and use generator expressions 2018-04-26 16:41:04 -05:00
Allen Byrne
6c82c49dd5 TRILABS-20 set a compiler name on all project commands 2018-04-20 10:11:55 -05:00
Allen Byrne
46f2a2a432 TRILABS-19 Initial conversion of include_directories to targets 2018-04-17 15:57:58 -05:00
Quincey Koziol
4766d282ff Corrections for parallel I/O & tests. 2018-03-21 00:09:16 -05:00
Quincey Koziol
d812c6fe60 Cleanup API context function usage. 2018-03-18 22:51:19 -05:00
Quincey Koziol
f38864920d Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into merge_func_enter_vol 
Plus initial steps toward merging API context push into FUNC_ENTER_API* macros
 2018-03-18 18:36:49 -05:00
Quincey Koziol
4a17aff408 Add API context interface and use it throughout the library. 2018-03-15 16:54:30 -05:00
lrknox
4b6d3193e1 Add 2 parallel test files to CHECK-CLEANFILES so that if their tests 
fail before removing them, make check-clean will remove them.
 2018-03-15 11:18:47 -05:00
Richard Warren
1a3beaadce Unify the test (t_bigio.c) between hdf5_1_10 and develop 2018-03-12 16:17:10 -04:00
lrknox
5d7c18fcfc Remove comparison to NULL for variables to be freed. 2018-03-12 14:10:59 -05:00
lrknox
6a53c14240 Add HDfree of vector, matrix_out and matrix_out1 previously HDmalloced 
in coll_write_test().
 2018-03-12 13:47:27 -05:00