Commit Graph

667 Commits

Author SHA1 Message Date
Dana Robinson
d8e3d8e908 [svn-r26333] Eliminates gcc warnings due to -Wunsuffixed-float-constants.
- Adds 'F' suffixes for most float constants.

- A few constants MUST be of type double. These now receive the long
  double L suffix and are then cast to double. I do this via a new
  H5_DOUBLE() macro which was added to H5private.h.

Fixes: HDFFV-9148

Tested on: h5committest
2015-03-01 13:48:54 -05:00
Dana Robinson
7462a7ef1c [svn-r26329] Merge of r26069, r26070, and r26072 from the features/autotools_rework
branch.

Removed the configure option that allows selective disabling of individual
internal filters (fletcher32, shuffle, etc.).

This feature mucked up the code with a lot of #ifdefs, saved very little space,
and was not scalable to a general scheme for library size reduction. We've
decided to remove the feature while we investigate a more general scheme for
decreasing the library size.

Part of: HDFFV-9086

Tested on: h5committest
2015-02-27 07:50:38 -05:00
Mohamad Chaarawi
c4044e0c85 [svn-r26303] remove files with .clog2 extension generated by MPE when doing make clean. 2015-02-25 13:48:31 -05:00
Allen Byrne
73bb11dda3 [svn-r26208] Update cmake minimums 2015-02-18 11:56:22 -05:00
Scot Breitenfeld
b28b5fade9 [svn-r26188] Merged autotools fixes into the trunk:
HDFFV-9089, HDFFV-9091, HDFFV-9092, HDFFV-9094, HDFFV-9095
2015-02-16 12:17:49 -05:00
Mohamad Chaarawi
74fbb9e327 [svn-r26180] merge configure fixes for HDFFV-9068,9069,9096,9097,9135 from autotools_rework branch:
- Remove Infering parallel compilers (C and Fortran) from configure.ac
- Remove restriction to build shared with parallel
- Cleanup parallel sections in configure.ac
- remove large file support checks
- MPE fixes.

tested with h5committest.
2015-02-16 11:17:03 -05:00
Allen Byrne
98958b530a [svn-r25904] Fix CMP0054 warning 2014-12-19 10:13:55 -05:00
Allen Byrne
573d47083b [svn-r25744] Add bitfield and opague datatype file for tests.
Tested: local linux
2014-10-27 15:50:33 -05:00
Allen Byrne
5a4357e4fb [svn-r25570] UNDO:Added option to build tools static when building shared libraries. This will prevent 'dll' being appended to the tool name on windows. See HDFFV-8292.
Windows DLL linkage problem because of defines needed.

Tested: local linux
2014-09-03 14:04:18 -05:00
Allen Byrne
c23f3a7ea5 [svn-r25569] Added option to build tools static when building shared libraries. This will prevent 'dll' being appended to the tool name on windows. See HDFFV-8292.
Tested: local linux
2014-09-03 12:12:52 -05:00
Quincey Koziol
33ea1ada24 [svn-r25496] Description:
Merge 64-bit ID changes from branch to trunk.  (Plus a few minor cleanups
that aren't on the branch)

Tested on:
    Mac OSX/64 10.9.4 (amazon) w/C++ & FORTRAN
    (h5committested on branch already for a week)
2014-07-30 15:55:14 -05:00
Mohamad Chaarawi
06ef71a37f [svn-r25397] - remove configure checks for MPI_File_get_size and Big
MPI_File_set_size as they are supported by most MPI implementations.
- fix bug in t_mpi.c (HDFFV-8856)
2014-07-07 13:22:48 -05:00
Allen Byrne
21474f8eee [svn-r25188] Implement change to cmake_ext_mod config folder
Tested: local linux
2014-05-14 14:50:28 -05:00
Allen Byrne
8f57e86ab9 [svn-r25185] update cmake command name case 2014-05-12 13:14:46 -05:00
Larry Knox
c6e3e68297 [svn-r25117] Removed LT_ADD_LIBHDF5_DEPENDENCY configure conditional to roll back fix for removing rpaths from l
ib files.  The fix also removed dependencies on libhdf5, etc. when the --disable-sharedlib-rpath co
nfigure option was invoked.
Added instead configure variable hardcode_into_lib=no.  This removes rpath from lib files on Linux
and solaris machines.

Tested with h5committest on jam, koala, ostrich and platypus (cmake), and with configure option --disable-sharedlib-rpath on emu, platypus and quail.
2014-04-25 16:59:53 -05:00
Dana Robinson
7309bb5ab8 [svn-r25113] Fixed Subversion EOL and executable attributes. No code changes. 2014-04-25 16:27:37 -05:00
Allen Byrne
98bbf4a36a [svn-r24948] Group tests by Common name
Remove WIN32 AND NOT CYGWIN if blocks - should be just WIN32

Tested: local linux CMake
2014-04-02 13:35:01 -05:00
Dana Robinson
d01ee66666 [svn-r24937] Adds an H5free_memory() function to the library for use with
functions that return library-allocated memory. The test and tool
code were modified to use this new function where it's appropriate.

Fixes HDFFV-7710, HDFFV-8519, and HDFFV-8551

Tested on:
    64-bit Windows 7 w/ VS2012
    32-bit LE linux w/ parallel and fortran (jam)
    32-bit LE linux w/ fortran and C++ (jam)
2014-03-31 18:35:09 -05:00
Allen Byrne
c6fe8c70b2 [svn-r24932] HDFFV-8290: Remove unnecessary $(srcdir) and use AM_CPPFLAGS instead of INCLUDES. Update automake to 1.14.1
h5committest
2014-03-31 12:07:05 -05:00
Quincey Koziol
f97d63cb95 [svn-r24869] Description:
Clean up more compiler warnings, plus merge a few Coverity bug fixes from
the hdf5_1_8_coverity branch back to the trunk:

r20877:
Purpose: Fix coverity issue 1723

Description:
Modified test_generate in hl/test_image to close file "f" before exit, even if
an error occurs.

r20879:
Issue 63: change check of return of H5Tget_nmembers to <=0. No need to go
futher if call fails as well as empty.

r20881:
Coverity #659 in Run 46: I changed the Line 442 where it tries to check whether
FLAG_PRINTED is TRUE.  But it had just been set to FALSE.  I took out the
condition check in the print statement.

Tested on:
    Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & Parallel
    (too minor to require h5committest)
2014-03-23 01:27:57 -05:00
Quincey Koziol
2e4302818a [svn-r24864] Description:
Remove all traces of MPI-POSIX VFD and GPFS detection/code.

    Remove remaining traces of stream VFD.

    Remove testpar/t_posix_compliant test (it's not actually verifying anything).

    Clean up H5D__mpio_opt_possible() further.

    Moved environment variable that disables MPI collective operations into
MPI-IO VFD (instead of it being in src/H5S.c).

    A few other small code cleanups.

Tested on:
    Mac OSX/64 10.9.2 (amazon) w/parallel & serial
2014-03-21 18:02:24 -05:00
Allen Byrne
03d10edd23 [svn-r24824] HDFFV-8700 -
KitWare recommendations: Change CMake commands to lower case.
Bump up CMake minimum versions.
Split test file into separate file for h5repack test.

Tested: local linux
2014-03-18 11:21:46 -05:00
Allen Byrne
f5689224b5 [svn-r24789] Bump up the minimum cmake version 2014-03-13 10:05:09 -05:00
Allen Byrne
6c5e74942d [svn-r24782] HDFFV-8700 -
KitWare recommendations: Change CMake commands to lower case.
2014-03-11 17:07:13 -05:00
Allen Byrne
a3292a77ce [svn-r24781] HDFFV-8700 -
KitWare recommendations: Change CMake commands to lower case.
Remove INCLUDE_DIRECTORIES in src for target level includes.
Change ADD_DEFINITIONS package debug defines into CMake option.
Remove -DNDEBUG
2014-03-11 16:14:57 -05:00
Quincey Koziol
1e36b5a348 [svn-r24726] Description:
Revert some earlier usage of strncpy, which was incorrect.

    Bring Coverity changes from branch back to trunk:

r20821:
    Use HDstrncpy. --gh
    (Fixed already, with strdup)

r20822:
    (Not merged, incorrect use of HDstrncpy())

r20823:
    (Not merged, incorrect use of HDstrncpy())

r20824:
    Maintenance: Bug fix: addressed CID 666.
    Value stored at *expression_len should be used in the call to
        HD5packFstring to avoid overflow (and unnecessary arithmetic
        calculation and casting) 

r20825:
    Issue 642: Added check for error and handler with print to stderr and exit.

r20826:
    Undo revision 20818, as that issue has already been fixed in the 1.8 branch
        and trunk (but not coverity branch)

r20827:
    (Not merged, incorrect use of HDstrncpy())
    
r20828:
    Use HDstrncpy. --gh
    (Corrected use of strncpy())

r20829:
    Check return of H5Lget_val(print_udata->fid, path, targbuf,
        linfo->u.val_size + 1, H5P_DEFAULT) and if error set trgbuf[0] to 0.
        Check if  H5Lunpack_elink_val(targbuf, linfo->u.val_size, NULL,
        &filename, &objname) was successful and allow print. Otherwise filename
        and objname are not created. (init those to NULL)

r20830:
    resolved coverity issues 939, 940, 941, 944, and 947.

    all were complaints about use of sprintf, and in all cases, the
    buffers used were large enough for all eventualities.

    Resolved issue by replacing calls to sprintf with calls
    to snprintf.

r20831:
    Maintenance: Addressed CID 852
    Replaced sprintf with snprintf

r20832:
    Purpose: Fix valgrind issues with hl/examples/ex_image2

    Description:
    Modified hl/examples/ex_image2 to free global "gbuf" before exit.

Tested on:
    Mac OSX/64 10.9.1 (amaon) w/C++, FORTRAN & Threadsafety
    (too minor to require h5committest)
2014-02-20 16:29:26 -05:00
Allen Byrne
624a466600 [svn-r24482] HDFFV-8635: remove test of whole file and just test dsets that have szip compression.
Tested local linux with cmake and autotools
2013-12-02 15:32:22 -05:00
Allen Byrne
5e695ce4bc [svn-r24481] HDFFV-8635: disable test because of szip causing different read call then expected. 2013-12-02 14:31:25 -05:00
Allen Byrne
2f097704ca [svn-r24471] JAVA-1798: Add the testfiles for hdf-java and the h5dump tests including the test to read filter data.
Tested: cmake and autotools - local linux
2013-11-27 11:01:16 -05:00
Allen Byrne
43690b681c [svn-r24411] Correct file generation 2013-11-07 11:45:25 -05:00
Allen Byrne
8190a5e4b3 [svn-r24408] Add compound integer tests files
Tested: local linux cmake
2013-11-06 13:28:12 -05:00
Allen Byrne
819b8099e2 [svn-r24392] Cleanup testfiles from scripts. Update lists of files to be cleaned. CMake update to clean testfiles.
Tested: local cmake, autools, and h5committest
2013-11-01 16:15:37 -05:00
Larry Knox
ab239810e1 [svn-r24194] Don't add hdf5 library dependencies to lib files when --disable-sharedlib-rpath configure option is invoked. Fix for HDFFV-8276.
Tested with h5committest and on hdf-duck.
2013-09-23 20:14:24 -05:00
Allen Byrne
c965b5503b [svn-r24172] Position trunk/1.8 vars in similar location for comparison. 2013-09-19 14:42:45 -05:00
Allen Byrne
0653325f0d [svn-r24167] HDFFV-8513, HDFFV-8522 Plugin testing in h5repack, h5dump.
Add more usage info for UserMacros.
Add new option information about the Plugin default path.

Tested: local linux, jam
2013-09-19 11:38:08 -05:00
Larry Knox
6b54dac504 [svn-r24115] Reduce warnings for conversions of different widths.
h5committested on jam, ostrich, koala, and platypus.
2013-09-06 17:48:28 -05:00
Allen Byrne
145f1ce9e3 [svn-r24104] HDFFV-8345: add User Defined filters to h5repack.
Reviewed in H5T-61

Tested: local linux - cmake and autotools
2013-09-06 10:15:50 -05:00
Quincey Koziol
5b876c929f [svn-r24101] Description:
Clean up warnings, enable new compiler warning flag(s) and bring back
changes from Coverity branch:

r20813:
Remove the dead code as listed for coverity bug #1722. h5committested.

r20814:
Issue 69: Check return value and throw error if negative return. Also free datatype id on error

r20815:
Use HDstrncpy. --gh

r20816:
Replaced one last HDstrcat call with HDstrncat to resolve coverity issue 832.

r20817:
Use HDstrncpy and HDstrncat. --gh

r20818:
Purpose: Fix valgrind issues with h5jam

Description:
Modified h5jam to free strings strdup'd in parse_command_line before exit. Note
that they may still not be freed in case of error, due to the widespread use of
exit().

r20819:
Issue 80: change loop to use int as loop index.

r20820:
Maintenance: Fixed the bug found by coverity CID 788
There were two problems with this function:
    1) it tried to unnecessary free NULL pointer
    2) it tried to allocate c_name buffer that is done by H5Pget_class_name


Tested on:
    Mac OSX 10.8.4 (amazon) w/gcc 4.8.1, C++ & FORTRAN
    (too minor to require h5committest)
2013-09-05 15:44:14 -05:00
Allen Byrne
d2e10eefd7 [svn-r24058] Coorect usage text wrt dataset subsetting 2013-08-22 15:16:45 -05:00
Allen Byrne
e86655bbf4 [svn-r24057] Add --superblock long name to parser and add tests for both --boot-block and --superblock.
Tested: local linux
2013-08-22 14:57:31 -05:00
Quincey Koziol
482a9c28e7 [svn-r24030] Description:
Clean up more compiler warnings.

Tested on:
    Mac OSX/64 10.8.4 (amazon) w/gcc, C++ & FORTRAN
    (too minor to require h5committest)
2013-08-19 17:13:15 -05:00
Allen Byrne
c502d81a8c [svn-r24029] Move TESTS to seperate file to allow easier editing by all developers.
Tested: local linux
2013-08-19 16:49:44 -05:00
Allen Byrne
28c2f17960 [svn-r24022] any_object option should be any_path 2013-08-19 11:02:29 -05:00
Quincey Koziol
308c378ccd [svn-r24020] Description:
Clean up compiler warnings

Tested on:
    Mac OSX/64 10.8.4 (amazon) w/C++ & FORTRAN
    (too minor to require h5committest)
2013-08-17 15:05:27 -05:00
Allen Byrne
e8d0919d43 [svn-r24002] Fix 32-bit and valgrind issues with new handle_paths code - correct math of adding a NULL to a string.
Tested: local linux (valgrind) and h5committest
2013-08-13 12:48:57 -05:00
Allen Byrne
4935d0bfab [svn-r23999] Move declaration to top of block - fix for windows. 2013-08-13 08:44:24 -05:00
Allen Byrne
5d0b400f69 [svn-r23996] HDFFV-7989: Add any_path option to search the file for paths. New test added, scripts updated, help text updated.
Tested: local linux
2013-08-12 16:58:31 -05:00
Allen Byrne
a3204d77e7 [svn-r23994] Correct printf % handling 2013-08-12 15:53:54 -05:00
Allen Byrne
f801cf4618 [svn-r23991] Reorder grouping 2013-08-12 14:52:09 -05:00
Allen Byrne
7a96201ee1 [svn-r23960] HDFFV-8490: Reorder and group h5dump help text.
Tested: local linux
2013-08-01 09:42:30 -05:00