Commit Graph

16548 Commits

Author SHA1 Message Date
Dana Robinson
18ae45027c Fixed additional minor warnings. 2017-05-25 08:42:18 -04:00
Dana Robinson
946fd98b8d Fixed many minor warnings. 2017-05-25 06:45:53 -04:00
Allen Byrne
710ed6d10a Merge pull request #531 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '416ad00182e2d0fccc09d60a6da95aef8ad94d0e':
  HDFFV-8611 add autotools test
  Remove obsolete function
  HDFFV-8611 change h5repack to save the root group creation order Added test and new arguments to control the the input file parsing.
2017-05-23 17:21:33 -05:00
Allen Byrne
416ad00182 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '9fc2b3ef8e7933da716e2d2f832e93d8fc8023c0':
  add linking flag to cmake, does not fix the issue, still disabled shared with fortran
  add documention comments for shared Fortran Fix on OSX
  Fix for shared fortran libraries on mac (HDFFV-2772).
  Fix for shared fortran libraries on mac (HDFFV-2772).
  Fix for shared fortran libraries on mac (HDFFV-2772).
2017-05-23 17:21:15 -05:00
Scot Breitenfeld
9fc2b3ef8e Merge pull request #532 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:develop to develop
* commit '57ab1e7d6945c45107ebdd945bb89951ec90b8f1':
  add linking flag to cmake, does not fix the issue, still disabled shared with fortran
  add documention comments for shared Fortran Fix on OSX
  Fix for shared fortran libraries on mac (HDFFV-2772).
  Fix for shared fortran libraries on mac (HDFFV-2772).
  Fix for shared fortran libraries on mac (HDFFV-2772).
2017-05-23 17:16:46 -05:00
M. Scot Breitenfeld
57ab1e7d69 add linking flag to cmake, does not fix the issue, still disabled shared with fortran 2017-05-23 17:14:21 -05:00
M. Scot Breitenfeld
69ccaee00a add documention comments for shared Fortran Fix on OSX 2017-05-23 09:53:59 -05:00
M. Scot Breitenfeld
6301d5a6cb Fix for shared fortran libraries on mac (HDFFV-2772). 2017-05-22 16:03:56 -05:00
M. Scot Breitenfeld
97ac37592b Fix for shared fortran libraries on mac (HDFFV-2772). 2017-05-22 15:45:17 -05:00
Allen Byrne
0f81f23d69 HDFFV-8611 add autotools test 2017-05-22 13:55:15 -05:00
Allen Byrne
60cfdf138c Remove obsolete function 2017-05-22 13:24:53 -05:00
Allen Byrne
cdcef539a3 HDFFV-8611 change h5repack to save the root group creation order
Added test and new arguments to control the the input file parsing.
2017-05-22 13:10:40 -05:00
Allen Byrne
8861b5a494 Merge pull request #527 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '973aebe25f87b84ff6dd3d9eca51b76643090564':
  Add  debug trace commands
  HDFFV-9055 Correct file generator
  Added note about 9055 and 10128, 9995 not needed
2017-05-19 13:39:46 -05:00
Allen Byrne
973aebe25f Add debug trace commands 2017-05-19 11:35:07 -05:00
M. Scot Breitenfeld
2b2a1d605e Fix for shared fortran libraries on mac (HDFFV-2772). 2017-05-18 16:32:26 -05:00
Allen Byrne
e60bf13c76 HDFFV-9055 Correct file generator 2017-05-18 16:29:52 -05:00
Allen Byrne
9b8ffee145 Added note about 9055 and 10128, 9995 not needed 2017-05-18 09:12:47 -05:00
Allen Byrne
13bedd4c4a Merge pull request #521 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit 'fcc56184f1699fc1d35b042acb1388cc76b8ea16':
  Whitespace
  Move execeutable command after declaration
  HDFFV-9055 add test files
  HDFFV-9055 Handle H5T_ARRAY types Create variables just for diff_array function Whitespace updates
2017-05-17 15:11:14 -05:00
Allen Byrne
fcc56184f1 Whitespace 2017-05-17 15:09:13 -05:00
Allen Byrne
71c223c082 Move execeutable command after declaration 2017-05-17 13:09:13 -05:00
Allen Byrne
23d9fe2649 HDFFV-9055 add test files 2017-05-17 10:06:17 -05:00
Allen Byrne
3ee87f72ad HDFFV-9055 Handle H5T_ARRAY types
Create variables just for diff_array function
Whitespace updates
2017-05-16 15:58:17 -05:00
Allen Byrne
858155c19b Merge pull request #519 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '71637634ac96b6167b384ebb461ce3b9ea66b4f8':
  HDFFV-9995 Clarify help text
  HDFFV-10128 Fixed string length with no null fixed
2017-05-16 14:54:53 -05:00
Allen Byrne
71637634ac HDFFV-9995 Clarify help text 2017-05-16 10:16:44 -05:00
Allen Byrne
4f0b92bdd5 HDFFV-10128 Fixed string length with no null fixed 2017-05-16 09:28:49 -05:00
Larry Knox
3e1a06e649 Merge pull request #516 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '56c3ec98207bb6c4b3e6a7b9523c2a1e849879c3':
  HDFFV-10128 add test to check null term Test is another dataset
  HDFFV-10128 Fix null term strings
2017-05-15 17:12:57 -05:00
Vailin Choi
8e8a30bdd4 Merge pull request #515 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to develop
* commit '54dff331778a660824961fdf6359e4eae998a13c':
  Incorporate additional code changes for the H5DOread_chunk patch from GE Heathcare (HDFFV-9934) This is the similar set of changes that was checked in to 1.8 branch: Incorporate the code changes that were missing from the original patch: (1) Additional tests in hl/test/test_dset_opt.c (2) Fix in src/H5Dchunk.c for direct access when an entry is in chunk cache but not dirty Tested on platypus, ostrich, kituo, mayll, osx1010test, moohan, quail, emu.
2017-05-15 13:31:47 -05:00
Allen Byrne
56c3ec9820 HDFFV-10128 add test to check null term
Test is another dataset
2017-05-15 12:33:58 -05:00
Vailin Choi
54dff33177 Incorporate additional code changes for the H5DOread_chunk patch from GE Heathcare (HDFFV-9934)
This is the similar set of changes that was checked in to 1.8 branch:
Incorporate the code changes that were missing from the original patch:
(1) Additional tests in hl/test/test_dset_opt.c
(2) Fix in src/H5Dchunk.c for direct access when an entry is in chunk cache but not dirty
Tested on platypus, ostrich, kituo, mayll, osx1010test, moohan, quail, emu.
2017-05-15 10:25:15 -05:00
Allen Byrne
7078993d63 HDFFV-10128 Fix null term strings 2017-05-12 14:40:39 -05:00
Dana Robinson
5e60a0e10e Merge pull request #512 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop to develop
* commit 'f95ef72a5e9827dfa63e4722938a58a8c9d686c0':
  Merged HDFFV-10187 direct chunk overwrite bugfix to develop from 1.10 branch.
2017-05-11 23:26:06 -05:00
Dana Robinson
f95ef72a5e Merged HDFFV-10187 direct chunk overwrite bugfix to develop from 1.10 branch. 2017-05-11 23:31:57 -04:00
Allen Byrne
a23da99bdb Merge pull request #506 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '0cb8152b8e97d659e076b42340509c41b3919754':
  HDFFV-10186 Need to pull the flag into the script
2017-05-11 09:12:11 -05:00
Allen Byrne
0cb8152b8e HDFFV-10186 Need to pull the flag into the script 2017-05-11 09:03:21 -05:00
Allen Byrne
fcdf2ace7d Merge pull request #503 in HDFFV/hdf5 from ~BYRN/hdf5_adb:bugfix/HDFFV-10186-tbitnopaque-test to develop
* commit 'ec0935a924a84b18b29473b4fcec7c3f4e1aca76':
  HDFFV-10186 xml test also needs endianess aware files
  HDFFV-10186 - h5tools_str_append is not printf
  HDFFV-10186 braces formatting
  Fix reference file contents
  HDFFV-10186 Add endianess to bitfield and fix tests
2017-05-10 16:38:36 -05:00
Larry Knox
46937e9032 Merge pull request #505 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
* commit 'c8a5520d3aa3a526460c81507f2f985dc534b14f':
  Call to H5Dopen has H5dopen2 arguments at line 12704 of test/dsets.c - changed to H5Dopen2 to fix failure with --with-default-api-version=v16 configure option.
2017-05-10 16:10:41 -05:00
lrknox
c8a5520d3a Call to H5Dopen has H5dopen2 arguments at line 12704 of test/dsets.c -
changed to H5Dopen2 to fix failure with --with-default-api-version=v16
configure option.
2017-05-10 14:44:58 -05:00
Allen Byrne
ec0935a924 HDFFV-10186 xml test also needs endianess aware files 2017-05-10 12:45:06 -05:00
Allen Byrne
7dc0c79c54 HDFFV-10186 - h5tools_str_append is not printf 2017-05-10 12:20:15 -05:00
Allen Byrne
dd45c3694f HDFFV-10186 braces formatting 2017-05-10 11:09:55 -05:00
Allen Byrne
772e6e9a7f Fix reference file contents 2017-05-10 11:00:37 -05:00
Allen Byrne
445c805a4c HDFFV-10186 Add endianess to bitfield and fix tests 2017-05-10 10:59:13 -05:00
Allen Byrne
9d50ed5287 Merge pull request #501 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit 'e4e261173f85de6f83651abd6950793d7b930a20':
  HDFFV-10186 more whitespace formatting
2017-05-10 10:46:37 -05:00
Allen Byrne
e4e261173f HDFFV-10186 more whitespace formatting 2017-05-10 10:12:19 -05:00
Allen Byrne
900a110c89 Merge pull request #497 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '4f36f613a6de09d8ec197b7e5a4a72dbdb9417a2':
  HDFFV-10186 Whitespace change Mostly tabs to spaces Remove Modifications comments
2017-05-10 08:48:46 -05:00
Vailin Choi
dc0276a81c Merge pull request #498 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to develop
* commit '8482314d7db83c47947af8ca50457cdb1ddae366':
  Fix for HDFFV-10051 Fix missing declaration for H5D__layout_compact_dirty_test(). Tested on mayll and osx1010test.
2017-05-09 17:34:15 -05:00
Vailin Choi
8482314d7d Fix for HDFFV-10051
Fix missing declaration for H5D__layout_compact_dirty_test().
Tested on mayll and osx1010test.
2017-05-09 17:30:20 -05:00
Allen Byrne
4f36f613a6 HDFFV-10186 Whitespace change
Mostly tabs to spaces
Remove Modifications comments
2017-05-09 16:52:05 -05:00
Vailin Choi
e062a77e0e Merge pull request #494 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to develop
* commit 'd436db6c6efdfe7e9dbe06a642715116ef0eb5e3':
  Fix for the two issues reported in HDFFV-10051 Modifications made based on the review comments from pull request #494 Tested on moohan, mayll, kituo, platypus, ostrich, osx1010test, quail, emu.
  Fix for the two issues reported in HDFFV-10051: (1) Repeated open/close of a compact dataset fails due to the increment of ndims in the dataset structure for every open. --This is done only for chunked dataset via H5D__chunk_set_sizes(). (2) layout "dirty" flag for a compact dataset is not reset properly after flushing the data at dataset close. --Reset the "dirty" flag before flushing the message to the object header via H5O_msg_write(). Tested on moohan, kituo, platypus, ostrich, osx1010test, quail, emu.
2017-05-09 13:18:26 -05:00
Allen Byrne
850a5956c0 Merge pull request #496 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '5263bc9029dcf06779a0ec2b89688912443a4bfa':
  HDFFV-10186 Whitespace changes Mostly replacing tabs with spaces Removed empty mod sections
2017-05-09 12:41:38 -05:00